Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0000761

Physical Location & Seq

Genomic Coordinates Reverse (-)

1290587 .. 1294396

Gene Structure 3810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1021400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGGTGGGAGCAGTTCAAAAGAGGGGATCTATAGGCCGGATTCGTCTACTCGATGGAGTTCTGCGTGGGACGGGTATTCGGATGATCAGCCAACATATTCTGAATCGCCACATGCTCAACCGTCATATGGTCAAGAAAGTGAGAGCTATCCACCACCACCACCCCCGGAATCCTATCCAACAGCACAGCCTTACTATGCCCCCGAGTACGCTGCTCCTGCAGCCCCTCGACCGGCTGCTCCTGCAGCCCCTCGGCCGGCTGCTCCTGCAGCTCCTCGGCATGAGAAGAAGTTCGATAGGAGATATTCCAGAATTGCTGATTCTTACAATTCCCTGGAGGAGGTGACGGAGGCTCTTGCACGTGCTGGTCTCGAGTCTTCCAATCTTATCGTCGGTATTGATTTCACAAAGAGCAATGAATGGACAGGTGCGAGGTCATTTCACCGGAAAAGCTTGCATCACGTTGGGAATACGCCAAATCCCTATGAACATGCGATATCCATAATTGGAAAGACCTTGGCTGTTTTTGATGAGGATAACCTAATTCCCTGTTTCGGCTTTGGAGATGCGTCAACTCATGATCAAGATGTCTTTAGTTTCTATGATGATAGATATTGCAATGGATTCGAGGAAGTATTGACTCGCTACAGGGAAATTGTTCCTAAGCTACGGCTTGCAGGACCGACTTCATTTGCACCTGTAATTGAACAGGCCATGACTATTGTTGAGGAGAGTCACGGCCAGTACCATGTACTGTTGATTATTGCAGATGGCCAGGTAACTAGAAGTGTTGATACTGAACGTGGCAGGCTGAGCCCTCAGGAGCAGAACACAGTTAATGCCATTGTTGCAGCAAGCAAGCTCCCTCTATCAATTATATTAGTTGGTGTTGGAGATGGGCCCTGGGACATGATGAAAGAATTTGATGACAATATTCCTACTCGGGCATTTGATAATTTCCAATTCGTGAATTTTACGCAAATTATGTCAAAGAACGTGCCACCATCAAGAAAGGAGACAGAATTTGCTCTAGCAGCCTTGATGGAAATTCCTTCTCAGTATAAAGCGACATTAGAACTTAGCTTACTGGGTGGTCGGAAGGGCAATATTCCTGAGAGGGTTCCTCTTCCCCCACCAGTGTATGGTGCGTCATCTTTCAGCAGCTCAAAACCTTCCCGTGGTACCGGTTTCAGTACACCATCTTTCACGAAACCTTCTCAAACTACCAGTTATGAGCCTAGTGTTCCCCCTTATTATGGAGACAGCAGTTCCGTCGGTACAGCTCCATCTGCTCCCAGTTCTACCTATGATCATCAGGTTTGCCCCATTTGCCTTACGAATTCGAAAGACATGGCCTTTGGTTGCGGGCATCAGACATGTTGCGACTGTGGACAGGATCTTCATTCGTGCCCAATATGCAGAACGACAATCCAAACCCGGATAAAACTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009308 GO:0009690 GO:0009850 GO:0009987 GO:0010817 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0034754 GO:0036211 GO:0042445 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0065008 GO:0070647 GO:0071704 GO:0071944 GO:0080134 GO:0080148 GO:0140096 GO:1901564 GO:2000070

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

485

Amino Acids

53.04

Weight (kDa)

5.44

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	151 - 363	5.8e-71	Copine
zf-C3HC4_3	PF13920	438 - 479	4.2e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01650 AT3G01650 AT5G14420 AT5G14420 AT5G14420 AT5G14420
fragaria_vesca	FvH4_5g06620 FvH4_5g06621 FvH4_5g06621 FvH4_5g06630 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970
malus_domestica	MD06G1162400.v1.1 MD09G1021400.v1.1 MD10G1071300.v1.1 MD14G1168100.v1.1 MD14G1168200.v1.1 MD17G1021400.v1.1
prunus_persica	Prupe.3G295000_v2.0.a1 Prupe.5G163000_v2.0.a1 Prupe.5G163100_v2.0.a1 Prupe.5G163100_v2.0.a1
pyrus_communis	pycom06g14510 pycom111g01780 pycom14g14020 pycom17g01850
rosa_chinensis	RchiOBHm_Chr2g0173441 RchiOBHm_Chr7g0192061 RchiOBHm_Chr7g0192071 RchiOBHm_Chr7g0192081
rosa_laevigata	RLG00000004403 RLG00000004404 RLG00000022190
rosa_multiflora	Rmu_sc0015463.1_g000001 Rmu_sc0019120.1_g000001 Rmu_ssc0000421.1_g000038 Rmu_ssc0000421.1_g000042 Rmu_ssc0000421.1_g000043
rosa_roxburghii	Rroxscaffold_2G00078850 Rroxscaffold_3G00263310 Rroxscaffold_3G00263320
rosa_rugosa	Rorug02G0570400 Rorug02G0570400 Rorug02G0570400 Rorug02G0570500 Rorug02G0570600 Rorug06G0512900 Rorug06G0513000 Rorug06G0513000 Rorug06G0513100 Rorug06G0513200
rosa_samantha	Rh2AG648900 Rh2BG659500 Rh2CG624800 Rh2DG674700 Rh7AG123300 Rh7BG124800 Rh7BG125000 Rh7CG127600 Rh7DG126600
rosa_wichuraiana	Rw0G003640 Rw0G003650 Rw2G053270 Rw7G010490 Rw7G010500 Rw7G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1181
AccB1I	GGYRCC	1 cut(s)	1181
AccB7I	CCANNNNNTGG	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	47
AciI	CCGC	1 cut(s)	1365
AclWI	GGATC	2 cut(s)	35, 1404
AcoI	YGGCCR	3 cut(s)	254, 739, 772
AcsI	RAATTY	5 cut(s)	920, 970, 1022, 1047, 1339
AcvI	CACGTG	1 cut(s)	362
AfaI	GTAC	6 cut(s)	209, 746, 753, 1183, 1195, 1279
AfiI	CCNNNNNNNGG	8 cut(s)	128, 232, 256, 340, 554, 1142, 1178, 1256
AflIII	ACRYGT	1 cut(s)	1376
AgeI	ACCGGT	1 cut(s)	1184
AgsI	TTSAA	2 cut(s)	18, 707
AjnI	CCWGG	3 cut(s)	333, 774, 902
AluBI	AGCT	8 cut(s)	147, 272, 453, 667, 862, 1083, 1164, 1283
AluI	AGCT	8 cut(s)	147, 272, 453, 667, 862, 1083, 1164, 1283
Alw26I	GTCTC	3 cut(s)	374, 1010, 1254
AlwI	GGATC	2 cut(s)	35, 1404
Ama87I	CYCGRG	3 cut(s)	203, 371, 942
AoxI	GGCC	7 cut(s)	35, 254, 711, 739, 772, 899, 1353
ApaI	GGGCCC	1 cut(s)	903
ApeKI	GCWGC	9 cut(s)	212, 221, 236, 245, 260, 269, 851, 1034, 1161
ApoI	RAATTY	5 cut(s)	920, 970, 1022, 1047, 1339
ArsI	GACNNNNNNTTYG	2 cut(s)	1340, 1372
AsiGI	ACCGGT	1 cut(s)	1184
Asp700I	GAANNNNTTC	2 cut(s)	290, 657
Asp718I	GGTACC	1 cut(s)	1181
AspS9I	GGNCC	3 cut(s)	680, 899, 900
AsuC2I	CCSGG	2 cut(s)	167, 1438
AsuHPI	GGTGA	2 cut(s)	355, 434
AsuII	TTCGAA	1 cut(s)	1343
AvaI	CYCGRG	3 cut(s)	203, 371, 942
AvaII	GGWCC	1 cut(s)	680
AxyI	CCTNAGG	1 cut(s)	819
BaeGI	GKGCMC	2 cut(s)	903, 1412
BalI	TGGCCA	1 cut(s)	774
BanI	GGYRCC	1 cut(s)	1181
BanII	GRGCYC	2 cut(s)	818, 903
BarI	GAAGNNNNNNTAC	2 cut(s)	778, 810
BbrPI	CACGTG	1 cut(s)	362
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	9 cut(s)	199, 223, 233, 247, 257, 281, 863, 1046, 1173
BccI	CCATC	7 cut(s)	48, 764, 890, 1012, 1036, 1207, 1294
BceAI	ACGGC	2 cut(s)	686, 754
BcgI	CGANNNNNNTGC	6 cut(s)	194, 228, 607, 641, 1255, 1289
BciT130I	CCWGG	3 cut(s)	335, 776, 904
BclI	TGATCA	3 cut(s)	85, 580, 1309
BcnI	CCSGG	2 cut(s)	167, 1438
BcoDI	GTCTC	3 cut(s)	374, 1010, 1254
BfaI	CTAG	3 cut(s)	783, 1031, 1239
BfmI	CTRYAG	5 cut(s)	31, 219, 243, 267, 646
BisI	GCNGC	9 cut(s)	213, 222, 237, 246, 261, 270, 852, 1035, 1162
BlpI	GCTNAGC	1 cut(s)	812
BlsI	GCNGC	9 cut(s)	214, 223, 238, 247, 262, 271, 853, 1036, 1163
Bme1390I	CCNGG	5 cut(s)	167, 335, 776, 904, 1438
Bme18I	GGWCC	1 cut(s)	680
BmeT110I	CYCGRG	3 cut(s)	203, 371, 942
BmgT120I	GGNCC	3 cut(s)	680, 899, 900
BmiI	GGNNCC	3 cut(s)	901, 1122, 1183
BmrFI	CCNGG	5 cut(s)	167, 335, 776, 904, 1438
BmrI	ACTGGG	2 cut(s)	1097, 1290
BmsI	GCATC	3 cut(s)	466, 556, 1378
BmuI	ACTGGG	2 cut(s)	1097, 1290
BpiI	GAAGAC	1 cut(s)	369
BplI	GAGNNNNNCTC	2 cut(s)	1108, 1140
BpmI	CTGGAG	1 cut(s)	356
Bpu10I	CCTNAGC	1 cut(s)	663
Bpu1102I	GCTNAGC	1 cut(s)	812
Bpu14I	TTCGAA	1 cut(s)	1343
BpuMI	CCSGG	2 cut(s)	167, 1438
BsaAI	YACGTR	1 cut(s)	362
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	8 cut(s)	165, 251, 275, 333, 516, 902, 903, 1177
BsaWI	WCCGGW	2 cut(s)	444, 1184
Bsc4I	CCNNNNNNNGG	8 cut(s)	128, 232, 256, 340, 554, 1142, 1178, 1256
Bse118I	RCCGGY	3 cut(s)	232, 256, 1184
Bse1I	ACTGG	5 cut(s)	742, 1092, 1136, 1227, 1296
Bse21I	CCTNAGG	1 cut(s)	819
Bse3DI	GCAATG	2 cut(s)	421, 625
BseBI	CCWGG	3 cut(s)	335, 776, 904
BseDI	CCNNGG	8 cut(s)	165, 251, 275, 333, 516, 902, 903, 1177
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	8 cut(s)	128, 232, 256, 340, 554, 1142, 1178, 1256
BseMI	GCAATG	2 cut(s)	421, 625
BseMII	CTCAG	4 cut(s)	803, 833, 1070, 1104
BseNI	ACTGG	5 cut(s)	742, 1092, 1136, 1227, 1296
BseRI	GAGGAG	3 cut(s)	264, 353, 743
BseSI	GKGCMC	2 cut(s)	903, 1412
BseX3I	CGGCCG	1 cut(s)	254
BseXI	GCAGC	9 cut(s)	199, 223, 233, 247, 257, 281, 863, 1046, 1173
Bsh1285I	CGRYCG	2 cut(s)	233, 257
BshFI	GGCC	7 cut(s)	37, 256, 713, 741, 774, 901, 1355
BshNI	GGYRCC	1 cut(s)	1181
BshTI	ACCGGT	1 cut(s)	1184
BsiEI	CGRYCG	2 cut(s)	233, 257
BsiHKCI	CYCGRG	3 cut(s)	203, 371, 942
BsiSI	CCGG	7 cut(s)	38, 167, 233, 257, 445, 1185, 1438
BslFI	GGGAC	2 cut(s)	83, 920
BslI	CCNNNNNNNGG	8 cut(s)	128, 232, 256, 340, 554, 1142, 1178, 1256
BsmAI	GTCTC	3 cut(s)	374, 1010, 1254
BsmFI	GGGAC	2 cut(s)	83, 920
BsnI	GGCC	7 cut(s)	37, 256, 713, 741, 774, 901, 1355
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	3 cut(s)	203, 371, 942
Bsp119I	TTCGAA	1 cut(s)	1343
Bsp120I	GGGCCC	1 cut(s)	899
Bsp1286I	GDGCHC	3 cut(s)	818, 903, 1412
Bsp143I	GATC	5 cut(s)	27, 85, 580, 1309, 1396
Bsp1720I	GCTNAGC	1 cut(s)	812
BspACI	CCGC	1 cut(s)	1365
BspANI	GGCC	7 cut(s)	37, 256, 713, 741, 774, 901, 1355
BspCNI	CTCAG	4 cut(s)	804, 832, 1069, 1105
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	3 cut(s)	901, 1122, 1183
BspMAI	CTGCAG	3 cut(s)	223, 247, 271
BspPI	GGATC	2 cut(s)	35, 1404
BspT104I	TTCGAA	1 cut(s)	1343
BspT107I	GGYRCC	1 cut(s)	1181
BspTNI	GGTCTC	1 cut(s)	374
BsrDI	GCAATG	2 cut(s)	421, 625
BsrFI	RCCGGY	3 cut(s)	232, 256, 1184
BsrI	ACTGG	5 cut(s)	742, 1092, 1136, 1227, 1296
BssAI	RCCGGY	3 cut(s)	232, 256, 1184
BssECI	CCNNGG	8 cut(s)	165, 251, 275, 333, 516, 902, 903, 1177
BssMI	GATC	5 cut(s)	27, 85, 580, 1309, 1396
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	3 cut(s)	335, 776, 904
Bst4CI	ACNGT	5 cut(s)	123, 756, 835, 1388, 1449
Bst6I	CTCTTC	1 cut(s)	1131
BstBAI	YACGTR	1 cut(s)	362
BstBI	TTCGAA	1 cut(s)	1343
BstC8I	GCNNGC	7 cut(s)	258, 455, 675, 809, 856, 860, 1367
BstDEI	CTNAG	6 cut(s)	663, 812, 819, 1056, 1079, 1113
BstDSI	CCRYGG	1 cut(s)	1177
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	88
BstKTI	GATC	5 cut(s)	30, 88, 583, 1312, 1399
BstMAI	GTCTC	3 cut(s)	374, 1010, 1254
BstMBI	GATC	5 cut(s)	27, 85, 580, 1309, 1396
BstMCI	CGRYCG	2 cut(s)	233, 257
BstNI	CCWGG	3 cut(s)	335, 776, 904
BstNSI	RCATGY	3 cut(s)	116, 494, 1380
BstSCI	CCNGG	5 cut(s)	165, 333, 774, 902, 1436
BstSFI	CTRYAG	5 cut(s)	31, 219, 243, 267, 646
BstSLI	GKGCMC	2 cut(s)	903, 1412
BstV1I	GCAGC	9 cut(s)	199, 223, 233, 247, 257, 281, 863, 1046, 1173
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	27, 1396
BstYI	RGATCY	2 cut(s)	27, 1396
BstZI	CGGCCG	1 cut(s)	254
Bsu36I	CCTNAGG	1 cut(s)	819
BsuRI	GGCC	7 cut(s)	37, 256, 713, 741, 774, 901, 1355
BtgI	CCRYGG	1 cut(s)	1177
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	1143
Cac8I	GCNNGC	7 cut(s)	258, 455, 675, 809, 856, 860, 1367
CciI	TCATGA	1 cut(s)	577
Cfr10I	RCCGGY	3 cut(s)	232, 256, 1184
Cfr13I	GGNCC	3 cut(s)	680, 899, 900
CseI	GACGC	2 cut(s)	558, 1137
Csp6I	GTAC	6 cut(s)	208, 745, 752, 1182, 1194, 1278
CspAI	ACCGGT	1 cut(s)	1184
CviAII	CATG	9 cut(s)	113, 281, 491, 578, 715, 749, 910, 1351, 1377
CviQI	GTAC	6 cut(s)	208, 745, 752, 1182, 1194, 1278
DdeI	CTNAG	6 cut(s)	663, 812, 819, 1056, 1079, 1113
DpnI	GATC	5 cut(s)	29, 87, 582, 1311, 1398
DpnII	GATC	5 cut(s)	27, 85, 580, 1309, 1396
EaeI	YGGCCR	3 cut(s)	254, 739, 772
EagI	CGGCCG	1 cut(s)	254
Eam1104I	CTCTTC	1 cut(s)	1131
EarI	CTCTTC	1 cut(s)	1131
EclXI	CGGCCG	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	516
Eco24I	GRGCYC	2 cut(s)	818, 903
Eco31I	GGTCTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	498
Eco47I	GGWCC	1 cut(s)	680
Eco52I	CGGCCG	1 cut(s)	254
Eco72I	CACGTG	1 cut(s)	362
Eco81I	CCTNAGG	1 cut(s)	819
Eco88I	CYCGRG	3 cut(s)	203, 371, 942
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	900
EcoRI	GAATTC	1 cut(s)	1339
EcoRII	CCWGG	3 cut(s)	333, 774, 902
EcoRV	GATATC	1 cut(s)	498
EcoT14I	CCWWGG	1 cut(s)	516
EcoT38I	GRGCYC	2 cut(s)	818, 903
ErhI	CCWWGG	1 cut(s)	516
FaeI	CATG	9 cut(s)	116, 284, 494, 581, 718, 752, 913, 1354, 1380
FaqI	GGGAC	2 cut(s)	83, 920
FatI	CATG	9 cut(s)	112, 280, 490, 577, 714, 748, 909, 1350, 1376
FauI	CCCGC	1 cut(s)	1358
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	3 cut(s)	85, 580, 1309
FblI	GTMKAC	1 cut(s)	47
Fnu4HI	GCNGC	9 cut(s)	213, 222, 237, 246, 261, 270, 852, 1035, 1162
FokI	GGATG	1 cut(s)	95
FriOI	GRGCYC	2 cut(s)	818, 903
Fsp4HI	GCNGC	9 cut(s)	213, 222, 237, 246, 261, 270, 852, 1035, 1162
FspBI	CTAG	3 cut(s)	783, 1031, 1239
GluI	GCNGC	9 cut(s)	213, 222, 237, 246, 261, 270, 852, 1035, 1162
GsuI	CTGGAG	1 cut(s)	356
HaeIII	GGCC	7 cut(s)	37, 256, 713, 741, 774, 901, 1355
HapII	CCGG	7 cut(s)	38, 167, 233, 257, 445, 1185, 1438
HgaI	GACGC	2 cut(s)	558, 1137
Hin1II	CATG	9 cut(s)	116, 284, 494, 581, 718, 752, 913, 1354, 1380
HincII	GTYRAC	1 cut(s)	573
HindII	GTYRAC	1 cut(s)	573
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	8 cut(s)	41, 104, 170, 320, 374, 624, 640, 733
HpaII	CCGG	7 cut(s)	38, 167, 233, 257, 445, 1185, 1438
HphI	GGTGA	2 cut(s)	355, 434
Hpy166II	GTNNAC	4 cut(s)	48, 573, 1196, 1391
Hpy188I	TCNGA	4 cut(s)	82, 103, 1098, 1374
Hpy8I	GTNNAC	4 cut(s)	48, 573, 1196, 1391
Hpy99I	CGWCG	2 cut(s)	395, 1277
HpyAV	CCTTC	4 cut(s)	1062, 1093, 1182, 1224
HpyCH4III	ACNGT	5 cut(s)	123, 756, 835, 1388, 1449
HpyCH4IV	ACGT	4 cut(s)	361, 462, 802, 996
HpyF3I	CTNAG	6 cut(s)	663, 812, 819, 1056, 1079, 1113
HpySE526I	ACGT	4 cut(s)	361, 462, 802, 996
Hsp92II	CATG	9 cut(s)	116, 284, 494, 581, 718, 752, 913, 1354, 1380
KpnI	GGTACC	1 cut(s)	1185
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Ksp22I	TGATCA	3 cut(s)	85, 580, 1309
Kzo9I	GATC	5 cut(s)	27, 85, 580, 1309, 1396
LmnI	GCTCC	9 cut(s)	9, 220, 244, 268, 277, 823, 867, 1288, 1297
Lsp1109I	GCAGC	9 cut(s)	199, 223, 233, 247, 257, 281, 863, 1046, 1173
LweI	GCATC	3 cut(s)	466, 556, 1378
MaeI	CTAG	3 cut(s)	783, 1031, 1239
MaeII	ACGT	4 cut(s)	361, 462, 802, 996
MaeIII	GTNAC	3 cut(s)	343, 734, 778
MalI	GATC	5 cut(s)	29, 87, 582, 1311, 1398
MboI	GATC	5 cut(s)	27, 85, 580, 1309, 1396
MboII	GAAGA	4 cut(s)	298, 369, 1118, 1391
MflI	RGATCY	2 cut(s)	27, 1396
MhlI	GDGCHC	3 cut(s)	818, 903, 1412
MlsI	TGGCCA	1 cut(s)	774
MluNI	TGGCCA	1 cut(s)	774
MlyI	GAGTC	3 cut(s)	383, 634, 742
MmeI	TCCRAC	3 cut(s)	203, 871, 1076
Mox20I	TGGCCA	1 cut(s)	774
MroNI	GCCGGC	1 cut(s)	256
MroXI	GAANNNNTTC	2 cut(s)	290, 657
MscI	TGGCCA	1 cut(s)	774
MseI	TTAA	2 cut(s)	837, 1453
Msp20I	TGGCCA	1 cut(s)	774
MspI	CCGG	7 cut(s)	38, 167, 233, 257, 445, 1185, 1438
MspR9I	CCNGG	5 cut(s)	167, 335, 776, 904, 1438
MvaI	CCWGG	3 cut(s)	335, 776, 904
NaeI	GCCGGC	1 cut(s)	258
NciI	CCSGG	2 cut(s)	167, 1438
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	5 cut(s)	27, 85, 580, 1309, 1396
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	9 cut(s)	116, 284, 494, 581, 718, 752, 913, 1354, 1380
NlaIV	GGNNCC	3 cut(s)	901, 1122, 1183
NmeAIII	GCCGAG	2 cut(s)	232, 256
NmuCI	GTSAC	2 cut(s)	343, 734
NspI	RCATGY	3 cut(s)	116, 494, 1380
NspV	TTCGAA	1 cut(s)	1343
PaeR7I	CTCGAG	1 cut(s)	371
PagI	TCATGA	1 cut(s)	577
PasI	CCCWGGG	1 cut(s)	903
PciI	ACATGT	1 cut(s)	1376
PdiI	GCCGGC	1 cut(s)	258
PdmI	GAANNNNTTC	2 cut(s)	290, 657
PfeI	GAWTC	5 cut(s)	41, 104, 170, 320, 624
PflMI	CCANNNNNTGG	1 cut(s)	1142
PinAI	ACCGGT	1 cut(s)	1184
PkrI	GCNGC	9 cut(s)	214, 223, 238, 247, 262, 271, 853, 1036, 1163
PleI	GAGTC	3 cut(s)	382, 634, 741
PmaCI	CACGTG	1 cut(s)	362
PmlI	CACGTG	1 cut(s)	362
PpsI	GAGTC	3 cut(s)	382, 634, 741
Ppu21I	YACGTR	1 cut(s)	362
PscI	ACATGT	1 cut(s)	1376
Psp6I	CCWGG	3 cut(s)	333, 774, 902
PspCI	CACGTG	1 cut(s)	362
PspGI	CCWGG	3 cut(s)	333, 774, 902
PspN4I	GGNNCC	3 cut(s)	901, 1122, 1183
PspOMI	GGGCCC	1 cut(s)	899
PspPI	GGNCC	3 cut(s)	680, 899, 900
PsrI	GAACNNNNNNTAC	2 cut(s)	1068, 1100
PstI	CTGCAG	3 cut(s)	223, 247, 271
PsuI	RGATCY	2 cut(s)	27, 1396
RsaI	GTAC	6 cut(s)	209, 746, 753, 1183, 1195, 1279
RsaNI	GTAC	6 cut(s)	208, 745, 752, 1182, 1194, 1278
SaqAI	TTAA	2 cut(s)	837, 1453
SatI	GCNGC	9 cut(s)	213, 222, 237, 246, 261, 270, 852, 1035, 1162
Sau3AI	GATC	5 cut(s)	27, 85, 580, 1309, 1396
Sau96I	GGNCC	3 cut(s)	680, 899, 900
SchI	GAGTC	3 cut(s)	383, 634, 742
ScrFI	CCNGG	5 cut(s)	167, 335, 776, 904, 1438
SduI	GDGCHC	3 cut(s)	818, 903, 1412
SfaNI	GCATC	3 cut(s)	466, 556, 1378
SfcI	CTRYAG	5 cut(s)	31, 219, 243, 267, 646
Sfr274I	CTCGAG	1 cut(s)	371
SfuI	TTCGAA	1 cut(s)	1343
SinI	GGWCC	1 cut(s)	680
SlaI	CTCGAG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
SsiI	CCGC	1 cut(s)	1365
SspI	AATATT	2 cut(s)	934, 1108
SspMI	CTAG	3 cut(s)	783, 1031, 1239
StyD4I	CCNGG	5 cut(s)	165, 333, 774, 902, 1436
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	5 cut(s)	123, 756, 835, 1388, 1449
TaiI	ACGT	4 cut(s)	364, 465, 805, 999
TaqI	TCGA	6 cut(s)	52, 229, 294, 372, 627, 1343
TaqII	GACCGA	1 cut(s)	697
TatI	WGTACW	2 cut(s)	751, 1193
TfiI	GAWTC	5 cut(s)	41, 104, 170, 320, 624
Tru1I	TTAA	2 cut(s)	837, 1453
Tru9I	TTAA	2 cut(s)	837, 1453
TscAI	CASTG	1 cut(s)	1143
TseFI	GTSAC	2 cut(s)	343, 734
TseI	GCWGC	9 cut(s)	212, 221, 236, 245, 260, 269, 851, 1034, 1161
Tsp45I	GTSAC	2 cut(s)	343, 734
TspDTI	ATGAA	5 cut(s)	432, 501, 678, 929, 1391
TspGWI	ACGGA	2 cut(s)	362, 1261
TspRI	CASTG	1 cut(s)	1143
Van91I	CCANNNNNTGG	1 cut(s)	1142
VpaK11BI	GGWCC	1 cut(s)	680
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	5 cut(s)	920, 970, 1022, 1047, 1339
XceI	RCATGY	3 cut(s)	116, 494, 1380
XhoI	CTCGAG	1 cut(s)	371
XmiI	GTMKAC	1 cut(s)	47
XmnI	GAANNNNTTC	2 cut(s)	290, 657
XspI	CTAG	3 cut(s)	783, 1031, 1239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.