Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0000761

Physical Location & Seq

Genomic Coordinates Reverse (-)

26126400 .. 26131041

Gene Structure 4642 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1168200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGTGCACAAAAAAGCAACCAAGTGAATTCGGTGGGCAACGCTACCAGCCAAAACACAAAAGGAAAAACACTGCAAGGAACCTTTTTTATCTAGAAGGAAACTACGTAGGAACCTTCACCAGTAAACTACGAACGCAAGTGTCGACCTGTCTGTCTATCATAGACTCAAAGACTTACACTCTTCAGTCGTTGCAAACTTGTAAGAACAACAAACGTTTGCCCAGTTACCACTTCAGCCCACAGACTTCTCCGCCCCCTGACTTACAACAACCTCGTCAACTCGGATATGTTCCAAAACATCATCTTCCTCTCGAAAAATGTCGGTCTGAGAGTTCAAAACGTTCAACTTCGAGACATCCTTCTTTTGGGACCGCATCACGTTCTTGGAGTCATCAGAGTTATCAAGAGGCACCATATGCACAGCCACCATTGATACCATCATATGCACCGCCAAGCCAAGACTACCGGCCACAGCAGTATTATGCACCTCCACCTCAAAGCCATGGCAGTGCTTGGCCAACAGGGTCAAATACGGGGTCGGGTACAAAGTTTGGGAGAATAAATGATGATTACAATAGCCTGGACCAGGTCACAGATGCATTGGCGCGTGCTGGTCTTGAGTCATCCAATCTTATTGTTGGCATTGATTTCACAAAAAGCAACGAGTGGACAGGTGCAAGGTCATTTCATCGGAAAAGCTTGCATCACATTGGAGAAGAGCAAAATCCCTATGAACAGGGAATAGCAATTATAGGGAAAACATTGTCTTCCTTTGATGAAGATAACTTGATTCCCTGTTTCGGATTTGGAGATGCATCTACCCATGACCAAGAAGTTTTCAGTTTCTACCCGGATGAGGGATCTTATTGCAATGGTTTTGAAGAAGTATTGAGACGATATAGAGAATTAGTCCCTCAGCTACGACTTGCCGGGCCCACATCCTTTGCCCCTATTATTGAAATGGGCATCACTATTGTTGAGCAAAGTGGCGGTCAGTACCATGTGTTGGTGATAATAGCTGATGGGCAGGTGACCAGAAGTGTTGATACCGGGCGTGGCCAGTTAAGCCCGCAGGAAAGGAAAACTGTTGAAGCAATTGTTAAAGCGAGCGAGTATCCCTTATCAATTATACTAGTTGGAGTTGGAGATGGACCATGGGATATGATGAAAGAATTTGATGACAACATCCCTGCTCGGACCTTCGATAACTTTCAGTTTGTGAATTTTACGGAAATTATGGCAAAGAATATGGACCGTTCGAGAAAAGAAGCAGAATTTGCTCTTGCAGCACTGATGGAAATACCTTCCCAGTATAAAGCAACACTAGAACTTAATATATTAGGCGCCACAAGAGGGAAGGCTATAGATAGGGTACCTCTGCCCCCACCTCATTATGGTTCGTCTTCTTTTAGCTCCCCAAAAACTTCACGATCAAGTAGTTTTCGTCCAAGTGCACCTTCTAGGCAACGTGATGAGTTTGTTAGCACAGCACATCCTGCCGGTTCAACTTCTGACAATAATGTCTGTCCCATTTGCCTAACCGATCCGAAGAATATGGCATTTGGTTGTGGACATCAGACATGCTGTGACTGTGGACAAGATCTTGACTTATGTCCCATATGCAGAACCAGCATAATCACCCGAATAAAGCTCTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Copine zf-C3HC4_3

Protein Analysis

553

Amino Acids

61.49

Weight (kDa)

8.11

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Copine	PF07002	233 - 447	3.2e-71	Copine
zf-C3HC4_3	PF13920	506 - 546	2.8e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000761)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G01650 AT3G01650 AT5G14420 AT5G14420 AT5G14420 AT5G14420
fragaria_vesca	FvH4_5g06620 FvH4_5g06621 FvH4_5g06621 FvH4_5g06630 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970 FvH4_6g51970
malus_domestica	MD06G1162400.v1.1 MD09G1021400.v1.1 MD10G1071300.v1.1 MD14G1168100.v1.1 MD14G1168200.v1.1 MD17G1021400.v1.1
prunus_persica	Prupe.3G295000_v2.0.a1 Prupe.5G163000_v2.0.a1 Prupe.5G163100_v2.0.a1 Prupe.5G163100_v2.0.a1
pyrus_communis	pycom06g14510 pycom111g01780 pycom14g14020 pycom17g01850
rosa_chinensis	RchiOBHm_Chr2g0173441 RchiOBHm_Chr7g0192061 RchiOBHm_Chr7g0192071 RchiOBHm_Chr7g0192081
rosa_laevigata	RLG00000004403 RLG00000004404 RLG00000022190
rosa_multiflora	Rmu_sc0015463.1_g000001 Rmu_sc0019120.1_g000001 Rmu_ssc0000421.1_g000038 Rmu_ssc0000421.1_g000042 Rmu_ssc0000421.1_g000043
rosa_roxburghii	Rroxscaffold_2G00078850 Rroxscaffold_3G00263310 Rroxscaffold_3G00263320
rosa_rugosa	Rorug02G0570400 Rorug02G0570400 Rorug02G0570400 Rorug02G0570500 Rorug02G0570600 Rorug06G0512900 Rorug06G0513000 Rorug06G0513000 Rorug06G0513100 Rorug06G0513200
rosa_samantha	Rh2AG648900 Rh2BG659500 Rh2CG624800 Rh2DG674700 Rh7AG123300 Rh7BG124800 Rh7BG125000 Rh7CG127600 Rh7DG126600
rosa_wichuraiana	Rw0G003640 Rw0G003650 Rw2G053270 Rw7G010490 Rw7G010500 Rw7G010510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1018
AasI	GACNNNNNNGTC	2 cut(s)	151, 1520
Acc36I	ACCTGC	1 cut(s)	1018
Acc65I	GGTACC	1 cut(s)	1372
AccB1I	GGYRCC	3 cut(s)	409, 1343, 1372
AccB7I	CCANNNNNTGG	1 cut(s)	1006
AccI	GTMKAC	1 cut(s)	143
AccII	CGCG	1 cut(s)	607
AciI	CCGC	5 cut(s)	251, 372, 449, 990, 1070
AclI	AACGTT	2 cut(s)	214, 340
AclWI	GGATC	2 cut(s)	868, 1538
AcoI	YGGCCR	3 cut(s)	467, 515, 1057
AcsI	RAATTY	4 cut(s)	26, 1172, 1222, 1274
AcuI	CTGAAG	2 cut(s)	167, 217
AcyI	GRCGYC	1 cut(s)	1344
AfaI	GTAC	3 cut(s)	544, 998, 1374
AfiI	CCNNNNNNNGG	8 cut(s)	365, 586, 800, 856, 857, 1006, 1353, 1394
AgsI	TTSAA	6 cut(s)	336, 345, 881, 959, 1091, 1506
AhlI	ACTAGT	1 cut(s)	1132
AjnI	CCWGG	2 cut(s)	579, 585
AjuI	GAANNNNNNNTTGG	2 cut(s)	1441, 1473
AluBI	AGCT	5 cut(s)	699, 919, 1019, 1413, 1651
AluI	AGCT	5 cut(s)	699, 919, 1019, 1413, 1651
Alw21I	GWGCWC	2 cut(s)	8, 1456
Alw26I	GTCTC	2 cut(s)	346, 886
Alw44I	GTGCAC	2 cut(s)	4, 1452
AlwI	GGATC	2 cut(s)	868, 1538
AoxI	GGCC	4 cut(s)	467, 515, 932, 1057
ApaI	GGGCCC	1 cut(s)	936
ApaLI	GTGCAC	2 cut(s)	4, 1452
ApeKI	GCWGC	1 cut(s)	1286
ApoI	RAATTY	4 cut(s)	26, 1172, 1222, 1274
ArsI	GACNNNNNNTTYG	4 cut(s)	521, 553, 976, 1008
Asp718I	GGTACC	1 cut(s)	1372
AspLEI	GCGC	2 cut(s)	607, 1346
AspS9I	GGNCC	7 cut(s)	369, 583, 932, 933, 1151, 1197, 1252
AsuC2I	CCSGG	3 cut(s)	851, 931, 1051
AsuHPI	GGTGA	4 cut(s)	109, 1021, 1042, 1630
AvaII	GGWCC	5 cut(s)	369, 583, 1151, 1197, 1252
BaeGI	GKGCMC	3 cut(s)	8, 936, 1456
BalI	TGGCCA	2 cut(s)	517, 1059
BanI	GGYRCC	3 cut(s)	409, 1343, 1372
BanII	GRGCYC	1 cut(s)	936
BarI	GAAGNNNNNNTAC	2 cut(s)	1030, 1062
BbsI	GAAGAC	2 cut(s)	759, 1395
Bbv12I	GWGCWC	2 cut(s)	8, 1456
BbvCI	CCTCAGC	1 cut(s)	915
BbvI	GCAGC	1 cut(s)	1298
BccI	CCATC	4 cut(s)	445, 1016, 1142, 1288
BciT130I	CCWGG	2 cut(s)	581, 587
BciVI	GTATCC	1 cut(s)	1125
BcnI	CCSGG	3 cut(s)	851, 931, 1051
BcoDI	GTCTC	2 cut(s)	346, 886
BcuI	ACTAGT	1 cut(s)	1132
BfaI	CTAG	4 cut(s)	92, 1133, 1325, 1461
BfmI	CTRYAG	1 cut(s)	1362
BfoI	RGCGCY	1 cut(s)	1347
BfuAI	ACCTGC	1 cut(s)	1018
BfuI	GTATCC	1 cut(s)	1125
BglII	AGATCT	1 cut(s)	1600
BisI	GCNGC	1 cut(s)	1287
BlsI	GCNGC	1 cut(s)	1288
Bme1390I	CCNGG	5 cut(s)	581, 587, 851, 931, 1051
Bme18I	GGWCC	5 cut(s)	369, 583, 1151, 1197, 1252
BmgT120I	GGNCC	7 cut(s)	369, 583, 932, 933, 1151, 1197, 1252
BmiI	GGNNCC	7 cut(s)	80, 112, 370, 411, 934, 1345, 1374
BmrFI	CCNGG	5 cut(s)	581, 587, 851, 931, 1051
BmrI	ACTGGG	2 cut(s)	216, 1303
BmsI	GCATC	6 cut(s)	383, 586, 712, 802, 824, 975
BmuI	ACTGGG	2 cut(s)	216, 1303
BoxI	GACNNNNGTC	1 cut(s)	1611
BpiI	GAAGAC	2 cut(s)	759, 1395
Bpu10I	CCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	3 cut(s)	851, 931, 1051
BsaAI	YACGTR	1 cut(s)	106
BsaHI	GRCGYC	1 cut(s)	1344
BsaJI	CCNNGG	2 cut(s)	502, 1154
Bsc4I	CCNNNNNNNGG	8 cut(s)	365, 586, 800, 856, 857, 1006, 1353, 1394
Bse118I	RCCGGY	2 cut(s)	465, 1499
Bse1I	ACTGG	4 cut(s)	120, 222, 1060, 1309
Bse3DI	GCAATG	1 cut(s)	877
BseBI	CCWGG	2 cut(s)	581, 587
BseDI	CCNNGG	2 cut(s)	502, 1154
BseGI	GGATG	6 cut(s)	355, 623, 859, 938, 1185, 1492
BseLI	CCNNNNNNNGG	8 cut(s)	365, 586, 800, 856, 857, 1006, 1353, 1394
BseMI	GCAATG	1 cut(s)	877
BseMII	CTCAG	2 cut(s)	318, 929
BseNI	ACTGG	4 cut(s)	120, 222, 1060, 1309
BseSI	GKGCMC	3 cut(s)	8, 936, 1456
BseXI	GCAGC	1 cut(s)	1298
Bsh1236I	CGCG	1 cut(s)	607
BshFI	GGCC	4 cut(s)	469, 517, 934, 1059
BshNI	GGYRCC	3 cut(s)	409, 1343, 1372
BsiHKAI	GWGCWC	2 cut(s)	8, 1456
BsiSI	CCGG	5 cut(s)	466, 851, 930, 1050, 1500
BslFI	GGGAC	4 cut(s)	382, 896, 1512, 1599
BslI	CCNNNNNNNGG	8 cut(s)	365, 586, 800, 856, 857, 1006, 1353, 1394
BsmAI	GTCTC	2 cut(s)	346, 886
BsmBI	CGTCTC	1 cut(s)	886
BsmFI	GGGAC	4 cut(s)	382, 896, 1512, 1599
BsnI	GGCC	4 cut(s)	469, 517, 934, 1059
Bsp120I	GGGCCC	1 cut(s)	932
Bsp1286I	GDGCHC	3 cut(s)	8, 936, 1456
Bsp143I	GATC	4 cut(s)	860, 1430, 1543, 1600
Bsp19I	CCATGG	2 cut(s)	502, 1154
BspACI	CCGC	5 cut(s)	251, 372, 449, 990, 1070
BspANI	GGCC	4 cut(s)	469, 517, 934, 1059
BspCNI	CTCAG	2 cut(s)	319, 928
BspFNI	CGCG	1 cut(s)	607
BspLI	GGNNCC	7 cut(s)	80, 112, 370, 411, 934, 1345, 1374
BspMI	ACCTGC	1 cut(s)	1018
BspPI	GGATC	2 cut(s)	868, 1538
BspQI	GCTCTTC	1 cut(s)	711
BspT107I	GGYRCC	3 cut(s)	409, 1343, 1372
BsrDI	GCAATG	1 cut(s)	877
BsrFI	RCCGGY	2 cut(s)	465, 1499
BsrI	ACTGG	4 cut(s)	120, 222, 1060, 1309
BssAI	RCCGGY	2 cut(s)	465, 1499
BssECI	CCNNGG	2 cut(s)	502, 1154
BssMI	GATC	4 cut(s)	860, 1430, 1543, 1600
BssNI	GRCGYC	1 cut(s)	1344
BssT1I	CCWWGG	2 cut(s)	502, 1154
Bst2UI	CCWGG	2 cut(s)	581, 587
Bst4CI	ACNGT	3 cut(s)	1087, 1256, 1592
Bst6I	CTCTTC	2 cut(s)	186, 711
BstACI	GRCGYC	1 cut(s)	1344
BstAPI	GCANNNNNTGC	3 cut(s)	416, 1277, 1496
BstBAI	YACGTR	1 cut(s)	106
BstC8I	GCNNGC	4 cut(s)	609, 701, 1070, 1108
BstDEI	CTNAG	2 cut(s)	327, 915
BstDSI	CCRYGG	2 cut(s)	502, 1154
BstEII	GGTNACC	1 cut(s)	1030
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	6 cut(s)	355, 623, 859, 938, 1185, 1492
BstFNI	CGCG	1 cut(s)	607
BstH2I	RGCGCY	1 cut(s)	1347
BstHHI	GCGC	2 cut(s)	607, 1346
BstKTI	GATC	4 cut(s)	863, 1433, 1546, 1603
BstMAI	GTCTC	2 cut(s)	346, 886
BstMBI	GATC	4 cut(s)	860, 1430, 1543, 1600
BstMWI	GCNNNNNNNGC	6 cut(s)	416, 1065, 1277, 1286, 1496, 1629
BstNI	CCWGG	2 cut(s)	581, 587
BstNSI	RCATGY	1 cut(s)	1584
BstPAI	GACNNNNGTC	1 cut(s)	1611
BstPI	GGTNACC	1 cut(s)	1030
BstSCI	CCNGG	5 cut(s)	579, 585, 849, 929, 1049
BstSFI	CTRYAG	1 cut(s)	1362
BstSLI	GKGCMC	3 cut(s)	8, 936, 1456
BstSNI	TACGTA	1 cut(s)	106
BstUI	CGCG	1 cut(s)	607
BstV1I	GCAGC	1 cut(s)	1298
BstV2I	GAAGAC	2 cut(s)	759, 1395
BstX2I	RGATCY	2 cut(s)	860, 1600
BstYI	RGATCY	2 cut(s)	860, 1600
BsuI	GTATCC	1 cut(s)	1125
BsuRI	GGCC	4 cut(s)	469, 517, 934, 1059
BtgI	CCRYGG	2 cut(s)	502, 1154
BtsCI	GGATG	6 cut(s)	355, 623, 859, 938, 1185, 1492
BtsI	GCAGTG	2 cut(s)	69, 514
BtsIMutI	CAGTG	3 cut(s)	69, 514, 1289
BveI	ACCTGC	1 cut(s)	1018
Cac8I	GCNNGC	4 cut(s)	609, 701, 1070, 1108
CfoI	GCGC	2 cut(s)	607, 1346
Cfr10I	RCCGGY	2 cut(s)	465, 1499
Cfr13I	GGNCC	7 cut(s)	369, 583, 932, 933, 1151, 1197, 1252
CsiI	ACCWGGT	1 cut(s)	585
Csp6I	GTAC	3 cut(s)	543, 997, 1373
CspCI	CAANNNNNGTGG	2 cut(s)	925, 960
CviAII	CATG	5 cut(s)	503, 824, 1001, 1155, 1581
CviQI	GTAC	3 cut(s)	543, 997, 1373
DdeI	CTNAG	2 cut(s)	327, 915
DinI	GGCGCC	1 cut(s)	1345
DpnI	GATC	4 cut(s)	862, 1432, 1545, 1602
DpnII	GATC	4 cut(s)	860, 1430, 1543, 1600
DrdI	GACNNNNNNGTC	2 cut(s)	151, 1520
DseDI	GACNNNNNNGTC	2 cut(s)	151, 1520
EaeI	YGGCCR	3 cut(s)	467, 515, 1057
Eam1104I	CTCTTC	2 cut(s)	186, 711
EarI	CTCTTC	2 cut(s)	186, 711
EciI	GGCGGA	1 cut(s)	240
Eco105I	TACGTA	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	502, 1154
Eco24I	GRGCYC	1 cut(s)	936
Eco47I	GGWCC	5 cut(s)	369, 583, 1151, 1197, 1252
Eco57I	CTGAAG	2 cut(s)	167, 217
Eco91I	GGTNACC	1 cut(s)	1030
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	1030
EcoRI	GAATTC	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	579, 585
EcoT14I	CCWWGG	2 cut(s)	502, 1154
EcoT22I	ATGCAT	2 cut(s)	601, 817
EcoT38I	GRGCYC	1 cut(s)	936
EgeI	GGCGCC	1 cut(s)	1345
EheI	GGCGCC	1 cut(s)	1345
ErhI	CCWWGG	2 cut(s)	502, 1154
Esp3I	CGTCTC	1 cut(s)	886
FaeI	CATG	5 cut(s)	506, 827, 1004, 1158, 1584
FalI	AAGNNNNNCTT	2 cut(s)	1441, 1473
FaqI	GGGAC	4 cut(s)	382, 896, 1512, 1599
FatI	CATG	5 cut(s)	502, 823, 1000, 1154, 1580
FauI	CCCGC	1 cut(s)	1077
FauNDI	CATATG	3 cut(s)	415, 442, 1619
FblI	GTMKAC	1 cut(s)	143
Fnu4HI	GCNGC	1 cut(s)	1287
FokI	GGATG	6 cut(s)	342, 610, 866, 925, 1172, 1479
FriOI	GRGCYC	1 cut(s)	936
Fsp4HI	GCNGC	1 cut(s)	1287
FspBI	CTAG	4 cut(s)	92, 1133, 1325, 1461
GlaI	GCGC	2 cut(s)	606, 1345
GluI	GCNGC	1 cut(s)	1287
HaeII	RGCGCY	1 cut(s)	1347
HaeIII	GGCC	4 cut(s)	469, 517, 934, 1059
HapII	CCGG	5 cut(s)	466, 851, 930, 1050, 1500
HhaI	GCGC	2 cut(s)	607, 1346
Hin1I	GRCGYC	1 cut(s)	1344
Hin1II	CATG	5 cut(s)	506, 827, 1004, 1158, 1584
Hin6I	GCGC	2 cut(s)	605, 1344
HinP1I	GCGC	2 cut(s)	605, 1344
HincII	GTYRAC	2 cut(s)	144, 278
HindII	GTYRAC	2 cut(s)	144, 278
HindIII	AAGCTT	1 cut(s)	697
HinfI	GANTC	4 cut(s)	164, 388, 620, 790
HpaII	CCGG	5 cut(s)	466, 851, 930, 1050, 1500
HphI	GGTGA	4 cut(s)	109, 1021, 1042, 1630
Hpy166II	GTNNAC	8 cut(s)	6, 125, 144, 278, 669, 1454, 1571, 1595
Hpy188I	TCNGA	9 cut(s)	284, 328, 396, 693, 803, 1197, 1513, 1548, 1578
Hpy188III	TCNNGA	8 cut(s)	92, 311, 351, 404, 617, 1260, 1428, 1604
Hpy8I	GTNNAC	8 cut(s)	6, 125, 144, 278, 669, 1454, 1571, 1595
HpyAV	CCTTC	7 cut(s)	89, 124, 369, 1210, 1314, 1351, 1467
HpyCH4III	ACNGT	3 cut(s)	1087, 1256, 1592
HpyCH4IV	ACGT	5 cut(s)	105, 214, 340, 379, 1468
HpyF10VI	GCNNNNNNNGC	6 cut(s)	416, 1065, 1277, 1286, 1496, 1629
HpyF3I	CTNAG	2 cut(s)	327, 915
HpySE526I	ACGT	5 cut(s)	105, 214, 340, 379, 1468
Hsp92I	GRCGYC	1 cut(s)	1344
Hsp92II	CATG	5 cut(s)	506, 827, 1004, 1158, 1584
HspAI	GCGC	2 cut(s)	605, 1344
KasI	GGCGCC	1 cut(s)	1343
KpnI	GGTACC	1 cut(s)	1376
Kzo9I	GATC	4 cut(s)	860, 1430, 1543, 1600
LguI	GCTCTTC	1 cut(s)	711
LmnI	GCTCC	1 cut(s)	1418
Lsp1109I	GCAGC	1 cut(s)	1298
LweI	GCATC	6 cut(s)	383, 586, 712, 802, 824, 975
MabI	ACCWGGT	1 cut(s)	585
MaeI	CTAG	4 cut(s)	92, 1133, 1325, 1461
MaeII	ACGT	5 cut(s)	105, 214, 340, 379, 1468
MaeIII	GTNAC	4 cut(s)	224, 589, 1030, 1586
MalI	GATC	4 cut(s)	862, 1432, 1545, 1602
MboI	GATC	4 cut(s)	860, 1430, 1543, 1600
MboII	GAAGA	8 cut(s)	173, 296, 728, 759, 791, 893, 1395, 1561
MfeI	CAATTG	1 cut(s)	1095
MflI	RGATCY	2 cut(s)	860, 1600
MhlI	GDGCHC	3 cut(s)	8, 936, 1456
MlsI	TGGCCA	2 cut(s)	517, 1059
MluCI	AATT	9 cut(s)	26, 747, 905, 1095, 1125, 1172, 1222, 1233, 1274
MluNI	TGGCCA	2 cut(s)	517, 1059
Mly113I	GGCGCC	1 cut(s)	1344
MlyI	GAGTC	3 cut(s)	158, 397, 629
MmeI	TCCRAC	2 cut(s)	1117, 1123
Mox20I	TGGCCA	2 cut(s)	517, 1059
Mph1103I	ATGCAT	2 cut(s)	601, 817
MscI	TGGCCA	2 cut(s)	517, 1059
MseI	TTAA	3 cut(s)	1064, 1101, 1332
MslI	CAYNNNNRTG	1 cut(s)	507
Msp20I	TGGCCA	2 cut(s)	517, 1059
MspI	CCGG	5 cut(s)	466, 851, 930, 1050, 1500
MspR9I	CCNGG	5 cut(s)	581, 587, 851, 931, 1051
MunI	CAATTG	1 cut(s)	1095
MvaI	CCWGG	2 cut(s)	581, 587
MvnI	CGCG	1 cut(s)	607
MwoI	GCNNNNNNNGC	6 cut(s)	416, 1065, 1277, 1286, 1496, 1629
NarI	GGCGCC	1 cut(s)	1344
NciI	CCSGG	3 cut(s)	851, 931, 1051
NcoI	CCATGG	2 cut(s)	502, 1154
NdeI	CATATG	3 cut(s)	415, 442, 1619
NdeII	GATC	4 cut(s)	860, 1430, 1543, 1600
NlaIII	CATG	5 cut(s)	506, 827, 1004, 1158, 1584
NlaIV	GGNNCC	7 cut(s)	80, 112, 370, 411, 934, 1345, 1374
NmuCI	GTSAC	3 cut(s)	589, 1030, 1586
NsiI	ATGCAT	2 cut(s)	601, 817
NspI	RCATGY	1 cut(s)	1584
PaqCI	CACCTGC	1 cut(s)	1018
PciSI	GCTCTTC	1 cut(s)	711
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	790
PflFI	GACNNNGTC	1 cut(s)	587
PflMI	CCANNNNNTGG	1 cut(s)	1006
PkrI	GCNGC	1 cut(s)	1288
PleI	GAGTC	3 cut(s)	158, 396, 628
PluTI	GGCGCC	1 cut(s)	1347
PpsI	GAGTC	3 cut(s)	158, 396, 628
Ppu21I	YACGTR	1 cut(s)	106
PshAI	GACNNNNGTC	1 cut(s)	1611
Psp1406I	AACGTT	2 cut(s)	214, 340
Psp6I	CCWGG	2 cut(s)	579, 585
PspEI	GGTNACC	1 cut(s)	1030
PspGI	CCWGG	2 cut(s)	579, 585
PspN4I	GGNNCC	7 cut(s)	80, 112, 370, 411, 934, 1345, 1374
PspOMI	GGGCCC	1 cut(s)	932
PspPI	GGNCC	7 cut(s)	369, 583, 932, 933, 1151, 1197, 1252
PsuI	RGATCY	2 cut(s)	860, 1600
PsyI	GACNNNGTC	1 cut(s)	587
RsaI	GTAC	3 cut(s)	544, 998, 1374
RsaNI	GTAC	3 cut(s)	543, 997, 1373
RseI	CAYNNNNRTG	1 cut(s)	507
SalI	GTCGAC	1 cut(s)	142
SapI	GCTCTTC	1 cut(s)	711
SaqAI	TTAA	3 cut(s)	1064, 1101, 1332
SatI	GCNGC	1 cut(s)	1287
Sau3AI	GATC	4 cut(s)	860, 1430, 1543, 1600
Sau96I	GGNCC	7 cut(s)	369, 583, 932, 933, 1151, 1197, 1252
SchI	GAGTC	3 cut(s)	158, 397, 629
ScrFI	CCNGG	5 cut(s)	581, 587, 851, 931, 1051
SduI	GDGCHC	3 cut(s)	8, 936, 1456
SexAI	ACCWGGT	1 cut(s)	585
SfaNI	GCATC	6 cut(s)	383, 586, 712, 802, 824, 975
SfcI	CTRYAG	1 cut(s)	1362
SfoI	GGCGCC	1 cut(s)	1345
SinI	GGWCC	5 cut(s)	369, 583, 1151, 1197, 1252
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	617
SmoI	CTYRAG	1 cut(s)	617
SnaBI	TACGTA	1 cut(s)	106
SpeI	ACTAGT	1 cut(s)	1132
Sse9I	AATT	9 cut(s)	26, 747, 905, 1095, 1125, 1172, 1222, 1233, 1274
SsiI	CCGC	5 cut(s)	251, 372, 449, 990, 1070
SspDI	GGCGCC	1 cut(s)	1343
SspMI	CTAG	4 cut(s)	92, 1133, 1325, 1461
StyD4I	CCNGG	5 cut(s)	579, 585, 849, 929, 1049
StyI	CCWWGG	2 cut(s)	502, 1154
TaaI	ACNGT	3 cut(s)	1087, 1256, 1592
TaiI	ACGT	5 cut(s)	108, 217, 343, 382, 1471
TaqI	TCGA	5 cut(s)	143, 312, 350, 1203, 1259
TaqII	GACCGA	1 cut(s)	312
TasI	AATT	9 cut(s)	26, 747, 905, 1095, 1125, 1172, 1222, 1233, 1274
TfiI	GAWTC	1 cut(s)	790
Tru1I	TTAA	3 cut(s)	1064, 1101, 1332
Tru9I	TTAA	3 cut(s)	1064, 1101, 1332
TscAI	CASTG	3 cut(s)	76, 514, 1296
TseFI	GTSAC	3 cut(s)	589, 1030, 1586
TseI	GCWGC	1 cut(s)	1286
Tsp45I	GTSAC	3 cut(s)	589, 1030, 1586
TspDTI	ATGAA	4 cut(s)	677, 747, 792, 1181
TspGWI	ACGGA	1 cut(s)	1244
TspRI	CASTG	3 cut(s)	76, 514, 1296
Tth111I	GACNNNGTC	1 cut(s)	587
Van91I	CCANNNNNTGG	1 cut(s)	1006
VneI	GTGCAC	2 cut(s)	4, 1452
VpaK11BI	GGWCC	5 cut(s)	369, 583, 1151, 1197, 1252
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	4 cut(s)	26, 1172, 1222, 1274
XbaI	TCTAGA	1 cut(s)	91
XceI	RCATGY	1 cut(s)	1584
XmiI	GTMKAC	1 cut(s)	143
XspI	CTAG	4 cut(s)	92, 1133, 1325, 1461
Zsp2I	ATGCAT	2 cut(s)	601, 817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.