Rorug02G0570400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000074
Physical Location & Seq
Forward (+)
69590785 .. 69596688
5904 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0570400.1

Sequence Viewer

Length: 3162 bp
ATGTCTGCAAAGGTGTTTCATTCATTCAGAGATGAGAATCGTGATCTCCATAAGCAACTTGGGTGCATGAGCGGGATCTTTCAGCTGTTTGATCGCCGGCATTTCCTCTCCGGCCGGAGCATCAATGGCAAGAGTCACAAGAGACTTCCTCCAGGTGAGAATGGCAACCAAGAAATAGATCCCAAAAGCAGAGCACTGCCCAAAGCTACAGATAAAAATCGAAAAAAGGCTGTCAAAGAGAGACGAAACTCCACAGAATCATCCACAACCACTGTTTCTTCATCTTCTTGTTCATCTAGCTTCTCATCATCTCTTGAATACAACAAAGCAGCTCAGCAAGAACAATCCTCGTCTGGCCAAACAATTTACAATGACAGACACACTCGGGACCTGTCCATGAACAAACCGAATATTTCAAAGCCCTTAAGTCAGCAATCCTTCGACTCAACCTACAGAGAAGCCCGTGGCATTTCAGTCAGACCTGGAGGAAAAGATGGAGTAGGTCATATATTGAAATACATCGACTCTCCAAGGCCTTCACAACCACTACAACCCATCAAGCCAAGGGTTTCTGGTGGTGAGTCATTTCAAGTTCATGCCAAGCTTCGGGAAGCACATCGAAATTCCAACGAGGAGAAGGATGGTTGCATGCGATTTGCGCCAAAAGAAGCAAGGAGGCTGTCTTATGATGAAAGGGCATCACGAGATACAGTGAAATCCACAACAAAACTCAAAGAATTCCCAAGGCTTTCCTTGGACAGCAAAGAACGTTCCATTAGGAGGGCTTGTAGCCCCGAAACAAGATCAAATCATTTCTTCAAGGATCTGCAGAGGGAGAATGGGAACTGTGACAAAATGCTTGACCTGCAGCCAGAACCCGGAAGTTCTAAAAGACCGAATGTTGTTGCAAAGTTGATGGGATTGGATCTCTCAGATTCAGTGTCAACCAGTGTGACTCCATTGAGGCTGATTAATACCTGTTCATCTGATAGATTTGATCCCTTGTCCAGATCATTGAGAAAAACAGATGAATCCAAGCAAGATGTTTTGTCTGGGTTCCCAAGAAATATGCAGAAGGGCTTCAGCTCACCCCAGAGGAGAAGTGCCAATTCAGTCATGCAGCCCACCGCAAATTCCAAGTTTCCAATAGAAACAGCTCCTTGGAGGCAGCCACATGGAAGCAAAGGTCCTCCTCAATCAACTTTCAACTGTCAAGAAGAACCTACAAAAGCACCAAAGTCATCACCTTCAGTATATGGTGAAATGGAGAAAAGACTAGCAGAACTAGAGTTCAAGAAATCAGGAAAGGACCTCCGAGCTCTTAAACAGATACTTGAAGCAATGCAGAAGAGTAAGGAAAACTCGGAGGACAAAAAAGAAGCCTCAAATTTTGCCTCTCAAGTAAGCAACAAAAGTGGTTTGTCTGAGAGCACAATATCAGCAAGCAAGAGAAATACAAAACGTAGCCCATCACTTCCAGCCACAGCCATGGGTTCCAAATCCCCAAAGAGTTACAAATCACCAATCATCATCATGAAACCCGGTAAACTCATGGAGAAAACACACAACTCTGCTTCCACAGTGATCTCCAGGGACAACAGATCATGTCCGCGGAGGCTTCAGACTAGCAACCCTGGTGACAACAGAAAGGAATTGCTTGACAGGAAAGCCAAAGATTTGACTCCAAGAAACATTCATACTAGTGATTCTTTCAATGGACGCCTTCGCTCCACTGATAAGAATTCTAATGTAAGAACTTCTAAAGCTGCACAAAAACCAAAGATGCCCCAGAGTGAAGAAAATTCCCCGGGCCCAAGTAGCAGCATCACGAGCCCAAGACTGCAAAACAGAAGATTTGGATTGGAGAAGCAATCTCCTCCAACCACTCTATCATCAGATTCAAGCATGACCAGAAGGCAACACAGTAGGCAATCATTAGAAGCAAGCACCCCGGGTAGAAAACTCAGGCCAAAATCTCCCAGTTTTCATCAAAGCAATTGCCAACTGAGCGAGACTAGCACCAGAACAAGAGCTATGAGTCACCAAGATGATACCACTTCTCAGCAATCTGAAAGCAACACCAGCTTGGCCTCACATGCAGACACAGAAGCCACAAGCATTCATCAGTCAGATAAGATTAGAGATACTTGCATGAAGCAGCACAGCCAAAAACAAAACAGGCCAGCAGTAGGGTTGAGTGATGATAGGTTAACAGCAGAAAGTGGCAAAGCTTCCTTAGAACAACCAAGTCCTATCTCCGTTCTTGATTCTACATTCTATAGGGACGACTCGCCTTCTCCTGTGAAGAAGATATCAAATGCCTTTAAAGATGATGGTGGGCAAAATCTGGATGAAGCAGAGTATGGACCGATGGACCTAGGTCTGATATCCAACAGTACAACGCCCAGTCTTGGTGCAGAGATTGACCATAAAAGGTTAGAGAACCTGAAGCACCTGATTCATAATCATCGACATATGAGCAGCACACATGAAGAACCCATCTTCGGGCACATTACTTTCCTCTGTGACCGCTCAAATCCAGACCACATGTACATTTCAGATATATTGCTAGCATCAGGAATTCTTAGGTATCTCGAATCTGCGTGGACAACCATTGAGCTCCAGACATTAGAACACCTGATCAACCCTAATTTGTTCCTTGCACTGGAAGAAATTAGGGCAGATATAGAGCCTTGGGATGATGGAAAGAGATGTGAAAAGATTCTCCAGTCCCAATCAGAGGAAAAAATTCAAAGAAAGCTAGTGTTCGATGTTGTTAAAGAATTCCTAGTTCAAAAATTAGCTGTGGAGAACTCTTTCAAGCAGTGGTTCTCACCAAACAAGCTGGCAGAAGGGAAACCAAGAGGGCAGCAGCTTTTGACAGAATTGTGCTCCCAGGTTGATCAGCTACAAAGAAGCAACTTGAATGGCAACCTAGATGATGAAGATGAAAGTTTGACAAGTATCTTGTTGGAAAATTTCATGGATCAATCACAGAATTGGACATTGTGTGATGGTGAAATTCCGAGTGTAGTGTTGGATGTTGAGCGATTGATCTTTAAAGACTTGATAACTGAAATTGTGAGCAGTGATGCAGTCGACCATGCGGGTTGGTCTGGTGGGCATTGTAGGCAACTGTTTTCCAAGAAGGGGCTCTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

1053

Amino Acids

118.06

Weight (kDa)

9.36

Isoelectric Point (pI)

66.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4378 PF14309 848 - 1026 1.3e-27 Domain of unknown function (DUF4378)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 873
AccBSI CCGCTC 2 cut(s) 72, 2532
AccI GTMKAC 1 cut(s) 3099
AccII CGCG 1 cut(s) 1612
AciI CCGC 6 cut(s) 72, 1128, 1610, 1612, 2530, 3107
AclI AACGTT 1 cut(s) 769
AclWI GGATC 6 cut(s) 83, 173, 831, 933, 992, 2994
AcoI YGGCCR 2 cut(s) 112, 355
AcuI CTGAAG 4 cut(s) 1066, 1233, 1604, 2468
AcyI GRCGYC 1 cut(s) 1720
AfaI GTAC 2 cut(s) 2398, 2552
AflII CTTAAG 1 cut(s) 424
AflIII ACRYGT 1 cut(s) 2547
AhlI ACTAGT 1 cut(s) 1700
AjnI CCWGG 5 cut(s) 151, 481, 1589, 1633, 2895
Alw21I GWGCWC 5 cut(s) 196, 1321, 1433, 2622, 2894
Alw26I GTCTC 3 cut(s) 136, 235, 2006
AlwI GGATC 6 cut(s) 83, 173, 831, 933, 992, 2994
Ama87I CYCGRG 3 cut(s) 384, 1807, 1951
AoxI GGCC 7 cut(s) 112, 355, 533, 1810, 1967, 2088, 2180
ApaI GGGCCC 1 cut(s) 1814
AseI ATTAAT 1 cut(s) 972
Asp700I GAANNNNTTC 4 cut(s) 1079, 2721, 2748, 2816
AspA2I CCTAGG 1 cut(s) 2377
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 7 cut(s) 388, 1187, 1309, 1810, 1811, 2366, 2374
AsuC2I CCSGG 6 cut(s) 879, 1542, 1808, 1809, 1952, 1953
AsuNHI GCTAGC 1 cut(s) 2569
AvaI CYCGRG 3 cut(s) 384, 1807, 1951
AvaII GGWCC 5 cut(s) 388, 1187, 1309, 2366, 2374
AvrII CCTAGG 1 cut(s) 2377
BaeGI GKGCMC 2 cut(s) 1814, 2511
BalI TGGCCA 1 cut(s) 357
BanII GRGCYC 5 cut(s) 1321, 1814, 1835, 2622, 3156
BauI CACGAG 2 cut(s) 702, 1828
Bbv12I GWGCWC 5 cut(s) 196, 1321, 1433, 2622, 2894
BciT130I CCWGG 5 cut(s) 153, 483, 1591, 1635, 2897
BclI TGATCA 2 cut(s) 2640, 2902
BcnI CCSGG 6 cut(s) 879, 1542, 1808, 1809, 1952, 1953
BcoDI GTCTC 3 cut(s) 136, 235, 2006
BcuI ACTAGT 1 cut(s) 1700
BfmI CTRYAG 5 cut(s) 207, 451, 827, 866, 2278
BfrI CTTAAG 1 cut(s) 424
BfuAI ACCTGC 1 cut(s) 873
BlnI CCTAGG 1 cut(s) 2377
BlpI GCTNAGC 1 cut(s) 333
Bme18I GGWCC 5 cut(s) 388, 1187, 1309, 2366, 2374
BmeT110I CYCGRG 3 cut(s) 384, 1807, 1951
BmgT120I GGNCC 7 cut(s) 388, 1187, 1309, 1810, 1811, 2366, 2374
BmiI GGNNCC 4 cut(s) 389, 1058, 1495, 1812
BmrI ACTGGG 2 cut(s) 1974, 2400
BmsI GCATC 6 cut(s) 129, 707, 1773, 1833, 2582, 3082
BmtI GCTAGC 1 cut(s) 2573
BmuI ACTGGG 2 cut(s) 1974, 2400
BoxI GACNNNNGTC 1 cut(s) 2379
BplI GAGNNNNNCTC 2 cut(s) 133, 165
BpmI CTGGAG 5 cut(s) 135, 504, 1573, 2606, 2711
Bpu1102I GCTNAGC 1 cut(s) 333
BpuEI CTTGAG 1 cut(s) 1383
BpuMI CCSGG 6 cut(s) 879, 1542, 1808, 1809, 1952, 1953
BsaBI GATNNNNATC 2 cut(s) 36, 216
BsaHI GRCGYC 1 cut(s) 1720
BsaXI ACNNNNNCTCC 2 cut(s) 772, 802
Bse118I RCCGGY 1 cut(s) 96
Bse1I ACTGG 5 cut(s) 948, 1980, 2406, 2670, 2728
Bse3DI GCAATG 1 cut(s) 1347
Bse8I GATNNNNATC 2 cut(s) 36, 216
BseBI CCWGG 5 cut(s) 153, 483, 1591, 1635, 2897
BseGI GGATG 5 cut(s) 260, 646, 2356, 2704, 3046
BseJI GATNNNNATC 2 cut(s) 36, 216
BseMI GCAATG 1 cut(s) 1347
BseMII CTCAG 6 cut(s) 347, 945, 1416, 1978, 1997, 2075
BseNI ACTGG 5 cut(s) 948, 1980, 2406, 2670, 2728
BseRI GAGGAG 4 cut(s) 647, 1111, 1182, 1866
BseSI GKGCMC 2 cut(s) 1814, 2511
BseX3I CGGCCG 1 cut(s) 112
BsgI GTGCAG 2 cut(s) 1752, 2436
Bsh1236I CGCG 1 cut(s) 1612
Bsh1285I CGRYCG 1 cut(s) 115
BshFI GGCC 7 cut(s) 114, 357, 535, 1812, 1969, 2090, 2182
BsiEI CGRYCG 1 cut(s) 115
BsiHKAI GWGCWC 5 cut(s) 196, 1321, 1433, 2622, 2894
BsiHKCI CYCGRG 3 cut(s) 384, 1807, 1951
BsiSI CCGG 7 cut(s) 97, 111, 115, 879, 1542, 1808, 1952
BslFI GGGAC 4 cut(s) 401, 1607, 2297, 2716
BsmAI GTCTC 3 cut(s) 136, 235, 2006
BsmBI CGTCTC 1 cut(s) 235
BsmFI GGGAC 4 cut(s) 401, 1607, 2297, 2716
BsmI GAATGC 1 cut(s) 2118
BsnI GGCC 7 cut(s) 114, 357, 535, 1812, 1969, 2090, 2182
BsoBI CYCGRG 3 cut(s) 384, 1807, 1951
Bsp120I GGGCCC 1 cut(s) 1810
Bsp1286I GDGCHC 9 cut(s) 196, 1321, 1433, 1814, 1835, 2511, 2622, 2894, 3156
Bsp1407I TGTACA 1 cut(s) 2550
Bsp1720I GCTNAGC 1 cut(s) 333
Bsp19I CCATGG 1 cut(s) 1488
BspACI CCGC 6 cut(s) 72, 1128, 1610, 1612, 2530, 3107
BspANI GGCC 7 cut(s) 114, 357, 535, 1812, 1969, 2090, 2182
BspCNI CTCAG 6 cut(s) 346, 944, 1417, 1977, 1998, 2074
BspFNI CGCG 1 cut(s) 1612
BspHI TCATGA 1 cut(s) 1533
BspLI GGNNCC 4 cut(s) 389, 1058, 1495, 1812
BspMAI CTGCAG 2 cut(s) 831, 870
BspMI ACCTGC 1 cut(s) 873
BspOI GCTAGC 1 cut(s) 2573
BspPI GGATC 6 cut(s) 83, 173, 831, 933, 992, 2994
BspTI CTTAAG 1 cut(s) 424
BsrBI CCGCTC 2 cut(s) 72, 2532
BsrDI GCAATG 1 cut(s) 1347
BsrFI RCCGGY 1 cut(s) 96
BsrGI TGTACA 1 cut(s) 2550
BsrI ACTGG 5 cut(s) 948, 1980, 2406, 2670, 2728
BssAI RCCGGY 1 cut(s) 96
BssNI GRCGYC 1 cut(s) 1720
BssSI CACGAG 2 cut(s) 702, 1828
BssT1I CCWWGG 8 cut(s) 530, 563, 743, 753, 1160, 1488, 2377, 2693
Bst2BI CACGAG 2 cut(s) 702, 1828
Bst2UI CCWGG 5 cut(s) 153, 483, 1591, 1635, 2897
Bst4CI ACNGT 8 cut(s) 274, 712, 848, 1211, 1582, 1925, 2396, 3138
Bst6I CTCTTC 1 cut(s) 1343
BstACI GRCGYC 1 cut(s) 1720
BstAFI CTTAAG 1 cut(s) 424
BstAUI TGTACA 1 cut(s) 2550
BstC8I GCNNGC 7 cut(s) 98, 650, 1444, 1945, 2184, 2571, 2847
BstDEI CTNAG 8 cut(s) 333, 931, 1425, 1964, 2006, 2061, 2236, 2585
BstDSI CCRYGG 3 cut(s) 463, 1488, 1610
BstF5I GGATG 5 cut(s) 260, 646, 2356, 2704, 3046
BstFNI CGCG 1 cut(s) 1612
BstHHI GCGC 1 cut(s) 661
BstMAI GTCTC 3 cut(s) 136, 235, 2006
BstMCI CGRYCG 1 cut(s) 115
BstNI CCWGG 5 cut(s) 153, 483, 1591, 1635, 2897
BstNSI RCATGY 3 cut(s) 652, 2099, 2551
BstPAI GACNNNNGTC 1 cut(s) 2379
BstSFI CTRYAG 5 cut(s) 207, 451, 827, 866, 2278
BstSLI GKGCMC 2 cut(s) 1814, 2511
BstUI CGCG 1 cut(s) 1612
BstX2I RGATCY 4 cut(s) 75, 178, 823, 925
BstXI CCANNNNNNTGG 1 cut(s) 1489
BstYI RGATCY 4 cut(s) 75, 178, 823, 925
BstZI CGGCCG 1 cut(s) 112
BsuRI GGCC 7 cut(s) 114, 357, 535, 1812, 1969, 2090, 2182
BtgI CCRYGG 3 cut(s) 463, 1488, 1610
BtsCI GGATG 5 cut(s) 260, 646, 2356, 2704, 3046
BtsI GCAGTG 3 cut(s) 194, 2831, 3094
BveI ACCTGC 1 cut(s) 873
Cac8I GCNNGC 7 cut(s) 98, 650, 1444, 1945, 2184, 2571, 2847
CciI TCATGA 1 cut(s) 1533
CfoI GCGC 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 96
Cfr13I GGNCC 7 cut(s) 388, 1187, 1309, 1810, 1811, 2366, 2374
Cfr42I CCGCGG 1 cut(s) 1613
Cfr9I CCCGGG 2 cut(s) 1807, 1951
CseI GACGC 1 cut(s) 1728
Csp6I GTAC 2 cut(s) 2397, 2551
CspCI CAANNNNNGTGG 2 cut(s) 1396, 1431
CviQI GTAC 2 cut(s) 2397, 2551
DdeI CTNAG 8 cut(s) 333, 931, 1425, 1964, 2006, 2061, 2236, 2585
DraI TTTAAA 2 cut(s) 2326, 3061
EaeI YGGCCR 2 cut(s) 112, 355
EagI CGGCCG 1 cut(s) 112
Eam1104I CTCTTC 1 cut(s) 1343
EarI CTCTTC 1 cut(s) 1343
Ecl136II GAGCTC 2 cut(s) 1319, 2620
EclXI CGGCCG 1 cut(s) 112
Eco130I CCWWGG 8 cut(s) 530, 563, 743, 753, 1160, 1488, 2377, 2693
Eco147I AGGCCT 1 cut(s) 535
Eco24I GRGCYC 5 cut(s) 1321, 1814, 1835, 2622, 3156
Eco32I GATATC 2 cut(s) 2313, 2388
Eco47I GGWCC 5 cut(s) 388, 1187, 1309, 2366, 2374
Eco52I CGGCCG 1 cut(s) 112
Eco53kI GAGCTC 2 cut(s) 1319, 2620
Eco57I CTGAAG 4 cut(s) 1066, 1233, 1604, 2468
Eco88I CYCGRG 3 cut(s) 384, 1807, 1951
EcoICRI GAGCTC 2 cut(s) 1319, 2620
EcoO109I RGGNCCY 3 cut(s) 388, 1187, 1309
EcoRI GAATTC 4 cut(s) 737, 1741, 2580, 2783
EcoRII CCWGG 5 cut(s) 151, 481, 1589, 1633, 2895
EcoRV GATATC 2 cut(s) 2313, 2388
EcoT14I CCWWGG 8 cut(s) 530, 563, 743, 753, 1160, 1488, 2377, 2693
EcoT38I GRGCYC 5 cut(s) 1321, 1814, 1835, 2622, 3156
ErhI CCWWGG 8 cut(s) 530, 563, 743, 753, 1160, 1488, 2377, 2693
Esp3I CGTCTC 1 cut(s) 235
FaqI GGGAC 4 cut(s) 401, 1607, 2297, 2716
FauI CCCGC 2 cut(s) 65, 3100
FauNDI CATATG 1 cut(s) 2475
FbaI TGATCA 2 cut(s) 2640, 2902
FblI GTMKAC 1 cut(s) 3099
FokI GGATG 5 cut(s) 247, 653, 2363, 2711, 3053
FriOI GRGCYC 5 cut(s) 1321, 1814, 1835, 2622, 3156
GlaI GCGC 1 cut(s) 660
GsuI CTGGAG 5 cut(s) 135, 504, 1573, 2606, 2711
HaeIII GGCC 7 cut(s) 114, 357, 535, 1812, 1969, 2090, 2182
HapII CCGG 7 cut(s) 97, 111, 115, 879, 1542, 1808, 1952
HgaI GACGC 1 cut(s) 1728
HhaI GCGC 1 cut(s) 661
Hin1I GRCGYC 1 cut(s) 1720
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HincII GTYRAC 3 cut(s) 945, 2211, 3100
HindII GTYRAC 3 cut(s) 945, 2211, 3100
HindIII AAGCTT 2 cut(s) 602, 2229
HpaI GTTAAC 1 cut(s) 2211
HpaII CCGG 7 cut(s) 97, 111, 115, 879, 1542, 1808, 1952
Hpy166II GTNNAC 5 cut(s) 945, 1547, 2211, 2607, 3100
Hpy8I GTNNAC 5 cut(s) 945, 1547, 2211, 2607, 3100
HpyCH4III ACNGT 8 cut(s) 274, 712, 848, 1211, 1582, 1925, 2396, 3138
HpyCH4IV ACGT 2 cut(s) 769, 1462
HpyF3I CTNAG 8 cut(s) 333, 931, 1425, 1964, 2006, 2061, 2236, 2585
HpySE526I ACGT 2 cut(s) 769, 1462
Hsp92I GRCGYC 1 cut(s) 1720
HspAI GCGC 1 cut(s) 659
KroI GCCGGC 1 cut(s) 96
KroNI GCCGGC 1 cut(s) 98
Ksp22I TGATCA 2 cut(s) 2640, 2902
KspAI GTTAAC 1 cut(s) 2211
KspI CCGCGG 1 cut(s) 1613
LmnI GCTCC 5 cut(s) 117, 1162, 1733, 2625, 2897
LweI GCATC 6 cut(s) 129, 707, 1773, 1833, 2582, 3082
MaeII ACGT 2 cut(s) 769, 1462
MaeIII GTNAC 7 cut(s) 134, 848, 952, 1511, 1637, 2039, 2525
MbiI CCGCTC 2 cut(s) 72, 2532
MfeI CAATTG 1 cut(s) 1996
MflI RGATCY 4 cut(s) 75, 178, 823, 925
MhlI GDGCHC 9 cut(s) 196, 1321, 1433, 1814, 1835, 2511, 2622, 2894, 3156
MlsI TGGCCA 1 cut(s) 357
MluNI TGGCCA 1 cut(s) 357
MlyI GAGTC 8 cut(s) 142, 437, 518, 590, 949, 1675, 2047, 2282
MmeI TCCRAC 5 cut(s) 651, 1904, 2415, 2952, 3018
Mox20I TGGCCA 1 cut(s) 357
MroNI GCCGGC 1 cut(s) 96
MroXI GAANNNNTTC 4 cut(s) 1079, 2721, 2748, 2816
MscI TGGCCA 1 cut(s) 357
MseI TTAA 7 cut(s) 425, 972, 1323, 2210, 2325, 2778, 3060
MslI CAYNNNNRTG 4 cut(s) 1487, 1532, 1701, 2046
Msp20I TGGCCA 1 cut(s) 357
MspA1I CMGCKG 2 cut(s) 85, 1612
MspCI CTTAAG 1 cut(s) 424
MspI CCGG 7 cut(s) 97, 111, 115, 879, 1542, 1808, 1952
MunI CAATTG 1 cut(s) 1996
Mva1269I GAATGC 1 cut(s) 2118
MvaI CCWGG 5 cut(s) 153, 483, 1591, 1635, 2897
MvnI CGCG 1 cut(s) 1612
NaeI GCCGGC 1 cut(s) 98
NciI CCSGG 6 cut(s) 879, 1542, 1808, 1809, 1952, 1953
NcoI CCATGG 1 cut(s) 1488
NdeI CATATG 1 cut(s) 2475
NgoMIV GCCGGC 1 cut(s) 96
NheI GCTAGC 1 cut(s) 2569
NlaIV GGNNCC 4 cut(s) 389, 1058, 1495, 1812
NmuCI GTSAC 6 cut(s) 134, 848, 952, 1637, 2039, 2525
NspI RCATGY 3 cut(s) 652, 2099, 2551
PaeI GCATGC 1 cut(s) 652
PagI TCATGA 1 cut(s) 1533
PceI AGGCCT 1 cut(s) 535
PciI ACATGT 1 cut(s) 2547
PctI GAATGC 1 cut(s) 2118
PdiI GCCGGC 1 cut(s) 98
PdmI GAANNNNTTC 4 cut(s) 1079, 2721, 2748, 2816
PleI GAGTC 8 cut(s) 141, 437, 518, 589, 949, 1675, 2046, 2282
PpsI GAGTC 8 cut(s) 141, 437, 518, 589, 949, 1675, 2046, 2282
PpuMI RGGWCCY 3 cut(s) 388, 1187, 1309
PscI ACATGT 1 cut(s) 2547
PshAI GACNNNNGTC 1 cut(s) 2379
PshBI ATTAAT 1 cut(s) 972
Psp124BI GAGCTC 2 cut(s) 1321, 2622
Psp1406I AACGTT 1 cut(s) 769
Psp5II RGGWCCY 3 cut(s) 388, 1187, 1309
Psp6I CCWGG 5 cut(s) 151, 481, 1589, 1633, 2895
PspGI CCWGG 5 cut(s) 151, 481, 1589, 1633, 2895
PspN4I GGNNCC 4 cut(s) 389, 1058, 1495, 1812
PspOMI GGGCCC 1 cut(s) 1810
PspPI GGNCC 7 cut(s) 388, 1187, 1309, 1810, 1811, 2366, 2374
PspPPI RGGWCCY 3 cut(s) 388, 1187, 1309
PstI CTGCAG 2 cut(s) 831, 870
PsuI RGATCY 4 cut(s) 75, 178, 823, 925
PvuII CAGCTG 1 cut(s) 85
RsaI GTAC 2 cut(s) 2398, 2552
RsaNI GTAC 2 cut(s) 2397, 2551
RseI CAYNNNNRTG 4 cut(s) 1487, 1532, 1701, 2046
SacI GAGCTC 2 cut(s) 1321, 2622
SacII CCGCGG 1 cut(s) 1613
SalI GTCGAC 1 cut(s) 3098
SaqAI TTAA 7 cut(s) 425, 972, 1323, 2210, 2325, 2778, 3060
Sau96I GGNCC 7 cut(s) 388, 1187, 1309, 1810, 1811, 2366, 2374
SchI GAGTC 8 cut(s) 142, 437, 518, 590, 949, 1675, 2047, 2282
SduI GDGCHC 9 cut(s) 196, 1321, 1433, 1814, 1835, 2511, 2622, 2894, 3156
SfaNI GCATC 6 cut(s) 129, 707, 1773, 1833, 2582, 3082
SfcI CTRYAG 5 cut(s) 207, 451, 827, 866, 2278
Sfr303I CCGCGG 1 cut(s) 1613
SgrBI CCGCGG 1 cut(s) 1613
SinI GGWCC 5 cut(s) 388, 1187, 1309, 2366, 2374
SmaI CCCGGG 2 cut(s) 1809, 1953
SmiMI CAYNNNNRTG 4 cut(s) 1487, 1532, 1701, 2046
SmlI CTYRAG 2 cut(s) 424, 1398
SmoI CTYRAG 2 cut(s) 424, 1398
SpeI ACTAGT 1 cut(s) 1700
SphI GCATGC 1 cut(s) 652
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 6 cut(s) 72, 1128, 1610, 1612, 2530, 3107
SspI AATATT 1 cut(s) 412
SstI GAGCTC 2 cut(s) 1321, 2622
StuI AGGCCT 1 cut(s) 535
StyI CCWWGG 8 cut(s) 530, 563, 743, 753, 1160, 1488, 2377, 2693
TaaI ACNGT 8 cut(s) 274, 712, 848, 1211, 1582, 1925, 2396, 3138
TaiI ACGT 2 cut(s) 772, 1465
TaqI TCGA 8 cut(s) 220, 441, 522, 619, 2470, 2595, 2769, 3099
TaqII GACCGA 2 cut(s) 910, 2383
TatI WGTACW 2 cut(s) 2396, 2550
Tru1I TTAA 7 cut(s) 425, 972, 1323, 2210, 2325, 2778, 3060
Tru9I TTAA 7 cut(s) 425, 972, 1323, 2210, 2325, 2778, 3060
TseFI GTSAC 6 cut(s) 134, 848, 952, 1637, 2039, 2525
Tsp45I GTSAC 6 cut(s) 134, 848, 952, 1637, 2039, 2525
TspGWI ACGGA 1 cut(s) 2248
TspMI CCCGGG 2 cut(s) 1807, 1951
Vha464I CTTAAG 1 cut(s) 424
VpaK11BI GGWCC 5 cut(s) 388, 1187, 1309, 2366, 2374
VspI ATTAAT 1 cut(s) 972
XceI RCATGY 3 cut(s) 652, 2099, 2551
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XmaI CCCGGG 2 cut(s) 1807, 1951
XmaJI CCTAGG 1 cut(s) 2377
XmiI GTMKAC 1 cut(s) 3099
XmnI GAANNNNTTC 4 cut(s) 1079, 2721, 2748, 2816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.