Rw7G030450

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000074
Physical Location & Seq
Forward (+)
43234458 .. 43235363
906 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G030450.1

Sequence Viewer

Length: 858 bp
ATGCGATTAACTGAGAATGATCTTGACAACAAGCTTCGTCCAAAGAATATGAAATATGATGCGGAGGGTGATGCAGAAACGGCTGTAAGAAGGATGAAAGTAAAGGGATCGACAGAGAAAGAATTTTGGTTTGAGTACACAATTGATAAAGACAGGAGGCTTGCAAACATGTTTTGGCGGGACCATCAATCACTTTTGGACTACATTGCGTACGGGGATGTGTTGATTGTAGACAGTACTTACAAGACTAACAGGTATAGTAAGCCTATGGTGTTGTTCGTCGGGTGCAACAATCACCGGCCTACTGTTGTGTTTGGTATTGCACTTGTATGTGATGAGAAAGAGGAAACTTATGATTGGGTATTTAATCAGTTCATTGATTCAATGCAACAAAAAAGACCCTTATCAGTCATTACAGACGGGGACGAAGCTATGAAGAATGCTCTTGAGCGCGTCATGCCCCAAACCCGTCACAGACTGTGTGCCTGGCACGTTGGTAGAAACATTGGCCAGAACCTAAACTCTGAAGAAGTTATGGAAGGTATTGGCCAATTGATGTTTGCGTCGCTAACCCTTGAAAAGAATGCGTGGGTGGCTTCTCTTTATAATAAGAGGGATCACTGGGTTGAGGCTTATTTTAGAGGCCACTTTTTCGGAAGTATGTGTAGCACACAGAGATGCGAGGGTATGAATTGTCAGTTTAAAAAGCATATCTCCAGGTATACAAAGTTGTCTGATGTTATGCCACGATTGGGGTGGAAACTGAATCGGTTAAGGGATCGCGTCATGCGTGACAACTTCAACATAAAAAATAGTACCCCTTTGTTTGATACTCATATGAGGGGCTTCAAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

285

Amino Acids

33.7

Weight (kDa)

8.92

Isoelectric Point (pI)

29.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 53 - 157 6.3e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 74 - 166 1.9e-28 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 606
AccI GTMKAC 2 cut(s) 231, 722
AccII CGCG 2 cut(s) 453, 783
AciI CCGC 2 cut(s) 62, 178
AclWI GGATC 3 cut(s) 115, 624, 786
AcoI YGGCCR 2 cut(s) 508, 547
AcsI RAATTY 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 546
AfaI GTAC 4 cut(s) 137, 212, 238, 817
AfiI CCNNNNNNNGG 1 cut(s) 752
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 4 cut(s) 384, 578, 802, 850
AjnI CCWGG 2 cut(s) 485, 716
AluBI AGCT 2 cut(s) 34, 431
AluI AGCT 2 cut(s) 34, 431
AlwI GGATC 3 cut(s) 115, 624, 786
AoxI GGCC 4 cut(s) 299, 508, 547, 643
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 1 cut(s) 453
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 80, 287
AvaII GGWCC 1 cut(s) 181
BalI TGGCCA 2 cut(s) 510, 549
BccI CCATC 1 cut(s) 192
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 2 cut(s) 487, 718
BmcAI AGTACT 1 cut(s) 238
Bme1390I CCNGG 2 cut(s) 487, 718
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 2 cut(s) 487, 718
BmrI ACTGGG 1 cut(s) 631
BmsI GCATC 3 cut(s) 49, 61, 668
BmuI ACTGGG 1 cut(s) 631
BpmI CTGGAG 1 cut(s) 700
BpuEI CTTGAG 1 cut(s) 467
Bsc4I CCNNNNNNNGG 1 cut(s) 752
Bse118I RCCGGY 1 cut(s) 297
Bse1I ACTGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 204
BseBI CCWGG 2 cut(s) 487, 718
BseGI GGATG 2 cut(s) 99, 223
BseLI CCNNNNNNNGG 1 cut(s) 752
BseMI GCAATG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 626
Bsh1236I CGCG 2 cut(s) 453, 783
BshFI GGCC 4 cut(s) 301, 510, 549, 645
BsiSI CCGG 1 cut(s) 298
BsiWI CGTACG 1 cut(s) 210
BslFI GGGAC 2 cut(s) 194, 437
BslI CCNNNNNNNGG 1 cut(s) 752
BsmFI GGGAC 2 cut(s) 194, 437
BsmI GAATGC 2 cut(s) 445, 589
BsnI GGCC 4 cut(s) 301, 510, 549, 645
Bsp143I GATC 4 cut(s) 19, 107, 616, 778
BspACI CCGC 2 cut(s) 62, 178
BspANI GGCC 4 cut(s) 301, 510, 549, 645
BspCNI CTCAG 1 cut(s) 4
BspFNI CGCG 2 cut(s) 453, 783
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 3 cut(s) 115, 624, 786
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 297
BsrI ACTGG 1 cut(s) 626
BssAI RCCGGY 1 cut(s) 297
BssMI GATC 4 cut(s) 19, 107, 616, 778
BssNAI GTATAC 1 cut(s) 723
Bst1107I GTATAC 1 cut(s) 723
Bst2UI CCWGG 2 cut(s) 487, 718
Bst4CI ACNGT 3 cut(s) 236, 307, 480
BstC8I GCNNGC 1 cut(s) 162
BstDEI CTNAG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 99, 223
BstFNI CGCG 2 cut(s) 453, 783
BstHHI GCGC 1 cut(s) 453
BstKTI GATC 4 cut(s) 22, 110, 619, 781
BstMBI GATC 4 cut(s) 19, 107, 616, 778
BstMWI GCNNNNNNNGC 3 cut(s) 80, 457, 593
BstNI CCWGG 2 cut(s) 487, 718
BstNSI RCATGY 1 cut(s) 172
BstSCI CCNGG 2 cut(s) 485, 716
BstUI CGCG 2 cut(s) 453, 783
BstZ17I GTATAC 1 cut(s) 723
BsuRI GGCC 4 cut(s) 301, 510, 549, 645
BtsCI GGATG 2 cut(s) 99, 223
BtsIMutI CAGTG 1 cut(s) 619
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 1 cut(s) 453
Cfr10I RCCGGY 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 181
CseI GACGC 3 cut(s) 442, 552, 772
Csp6I GTAC 4 cut(s) 136, 211, 237, 816
CviAII CATG 3 cut(s) 169, 457, 787
CviQI GTAC 4 cut(s) 136, 211, 237, 816
DdeI CTNAG 1 cut(s) 12
DpnI GATC 4 cut(s) 21, 109, 618, 780
DpnII GATC 4 cut(s) 19, 107, 616, 778
DraI TTTAAA 1 cut(s) 703
EaeI YGGCCR 2 cut(s) 508, 547
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 546
EcoRII CCWGG 2 cut(s) 485, 716
FaeI CATG 3 cut(s) 172, 460, 790
FaqI GGGAC 2 cut(s) 194, 437
FatI CATG 3 cut(s) 168, 456, 786
FauI CCCGC 1 cut(s) 171
FauNDI CATATG 1 cut(s) 837
FblI GTMKAC 2 cut(s) 231, 722
FokI GGATG 2 cut(s) 106, 230
GlaI GCGC 1 cut(s) 452
GsuI CTGGAG 1 cut(s) 700
HaeIII GGCC 4 cut(s) 301, 510, 549, 645
HapII CCGG 1 cut(s) 298
HgaI GACGC 3 cut(s) 442, 552, 772
HhaI GCGC 1 cut(s) 453
Hin1II CATG 3 cut(s) 172, 460, 790
Hin6I GCGC 1 cut(s) 451
HinP1I GCGC 1 cut(s) 451
HindIII AAGCTT 1 cut(s) 32
HinfI GANTC 2 cut(s) 380, 766
HpaII CCGG 1 cut(s) 298
HphI GGTGA 2 cut(s) 80, 287
Hpy166II GTNNAC 3 cut(s) 138, 232, 723
Hpy188I TCNGA 3 cut(s) 526, 656, 736
Hpy188III TCNNGA 2 cut(s) 23, 446
Hpy8I GTNNAC 3 cut(s) 138, 232, 723
Hpy99I CGWCG 2 cut(s) 284, 568
HpyAV CCTTC 2 cut(s) 84, 533
HpyCH4III ACNGT 3 cut(s) 236, 307, 480
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 5 cut(s) 74, 164, 288, 323, 388
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 457, 593
HpyF3I CTNAG 1 cut(s) 12
HpySE526I ACGT 1 cut(s) 492
Hsp92II CATG 3 cut(s) 172, 460, 790
HspAI GCGC 1 cut(s) 451
Kzo9I GATC 4 cut(s) 19, 107, 616, 778
LpnPI CCDG 9 cut(s) 139, 238, 311, 472, 499, 524, 607, 703, 730
LweI GCATC 3 cut(s) 49, 61, 668
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 2 cut(s) 470, 791
MalI GATC 4 cut(s) 21, 109, 618, 780
MboI GATC 4 cut(s) 19, 107, 616, 778
MboII GAAGA 2 cut(s) 448, 539
MfeI CAATTG 2 cut(s) 141, 551
MlsI TGGCCA 2 cut(s) 510, 549
MluCI AATT 4 cut(s) 122, 141, 551, 691
MluNI TGGCCA 2 cut(s) 510, 549
MnlI CCTC 8 cut(s) 58, 150, 337, 606, 622, 635, 676, 834
Mox20I TGGCCA 2 cut(s) 510, 549
MscI TGGCCA 2 cut(s) 510, 549
MseI TTAA 4 cut(s) 8, 366, 702, 773
MslI CAYNNNNRTG 2 cut(s) 328, 676
Msp20I TGGCCA 2 cut(s) 510, 549
MspI CCGG 1 cut(s) 298
MspR9I CCNGG 2 cut(s) 487, 718
MunI CAATTG 2 cut(s) 141, 551
Mva1269I GAATGC 2 cut(s) 445, 589
MvaI CCWGG 2 cut(s) 487, 718
MvnI CGCG 2 cut(s) 453, 783
MwoI GCNNNNNNNGC 3 cut(s) 80, 457, 593
NdeI CATATG 1 cut(s) 837
NdeII GATC 4 cut(s) 19, 107, 616, 778
NlaIII CATG 3 cut(s) 172, 460, 790
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 470, 791
NspI RCATGY 1 cut(s) 172
PciI ACATGT 1 cut(s) 168
PcsI WCGNNNNNNNCGW 1 cut(s) 787
PctI GAATGC 2 cut(s) 445, 589
PfeI GAWTC 2 cut(s) 380, 766
Pfl23II CGTACG 1 cut(s) 210
PscI ACATGT 1 cut(s) 168
PsiI TTATAA 1 cut(s) 606
Psp6I CCWGG 2 cut(s) 485, 716
PspGI CCWGG 2 cut(s) 485, 716
PspLI CGTACG 1 cut(s) 210
PspN4I GGNNCC 1 cut(s) 182
PspPI GGNCC 1 cut(s) 181
RsaI GTAC 4 cut(s) 137, 212, 238, 817
RsaNI GTAC 4 cut(s) 136, 211, 237, 816
RseI CAYNNNNRTG 2 cut(s) 328, 676
SaqAI TTAA 4 cut(s) 8, 366, 702, 773
Sau3AI GATC 4 cut(s) 19, 107, 616, 778
Sau96I GGNCC 1 cut(s) 181
ScaI AGTACT 1 cut(s) 238
ScrFI CCNGG 2 cut(s) 487, 718
SetI ASST 7 cut(s) 36, 257, 433, 495, 519, 544, 722
SfaNI GCATC 3 cut(s) 49, 61, 668
SinI GGWCC 1 cut(s) 181
SmiMI CAYNNNNRTG 2 cut(s) 328, 676
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 4 cut(s) 122, 141, 551, 691
SsiI CCGC 2 cut(s) 62, 178
StyD4I CCNGG 2 cut(s) 485, 716
TaaI ACNGT 3 cut(s) 236, 307, 480
TaiI ACGT 1 cut(s) 495
TaqI TCGA 1 cut(s) 110
TasI AATT 4 cut(s) 122, 141, 551, 691
TatI WGTACW 2 cut(s) 135, 236
TfiI GAWTC 2 cut(s) 380, 766
Tru1I TTAA 4 cut(s) 8, 366, 702, 773
Tru9I TTAA 4 cut(s) 8, 366, 702, 773
TscAI CASTG 1 cut(s) 626
TseFI GTSAC 2 cut(s) 470, 791
Tsp45I GTSAC 2 cut(s) 470, 791
TspDTI ATGAA 5 cut(s) 65, 110, 364, 449, 704
TspRI CASTG 1 cut(s) 626
VpaK11BI GGWCC 1 cut(s) 181
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 172
XcmI CCANNNNNNNNNTGG 1 cut(s) 753
XmiI GTMKAC 2 cut(s) 231, 722
ZrmI AGTACT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.