Rw0G019200

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00864
OG0000074
Physical Location & Seq
Reverse (-)
23291 .. 25768
2478 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019200.1

Sequence Viewer

Length: 1818 bp
ATGTCAATTCGGTTTGGTAAATGCACAGAGGTAACTACGCGTTTAAAGGAGGCAACGGGGAGTGGAAAACCGGCTGAATCAACAGAACTGAGGAAATCACCTGGAATAGCACAAGAGGACAAAACATTACCTGATGTTGGTATTGAAAGGCCTGAATTTGTGAAACATACGGGGGCTGCACAATTTAATGATAAGCATTTTGAAGACCTTACAATGGACGATATGAAGGCAGTATACTTCCCAACCGTACAGGAAGCAGAGAAGTTCTTGTCATTGTATTCACGAATGCTTGGTTTCAGCATACGGAGGGATAGGTTGCAGAAGGAAGGCAATGACATGGTGGTAAGGAGGCAGTGGGTATGTTCAAAACAAGGACTGGCAAGTATGAAGTCGAGCAAGCATAAAGGTGTGGATAAGAACAAATTTACAAAGCATCAGACCATTGGGGAGCAGAAGAAATCGAGGAGGAACATAGTACCTAGGGGAAGGAGATACACAAGAGTTAACTGCCAAGCTGCATTCAGTGTTAGATATTGCAAGGAAAGGGAGCTATACCGCCTGTCAAATTTTATACATGAGCACAATCATGAGCTTGCCATGTCCCATGAGGTTGAGTGCCTTCGTCGCGCACAAGTCCACACTAGTAGGGCTTATGAGCATCTAGTAGAGCAAGCTGGGGGACACGACGGTGTCGGCTTCATCATAAAAGATCTGTACAACAAGATTGCTAAGAAGAGGAGAAATGATGAGCTGGATGGGGATGCACGGGCCGCATTGACTTGGATGAACATGAGGGGAATGGAGTCACAACAGTTCTGCTGCAAGTACACGAATAGGAGGCTGCTTGGCACTCAATGGTGGTCAGAAATGGGTTGTCGGACAATGCATGGGTTACAAGCTTGTACAACAAACGGGATAGGTGGGCGGAAGCATTCTTCAGAGGGCACTTTTTTTGGAGGAATGTGCAGTACCCAACGTGTGGAAGGCATGCACGCAAAGCTGAAAAAAGAGATTGGGAGGCACACTAGACTATGTGAAGTTATGCCAAGAATGGAGAAGACACTTAGGCGTATGCGGAACCGAGTATTGTATGACAACTTCAGGTCCAAAAATAGTGTACCGGTTTATGAGACGCACATGAGGGGGATCGAGGAAGATGCATGTAGGCTGTTCACGGATGACATCTTCATTATGATAAAGTCACAAATCATGTTCGAGAGGAGTCACATTTTCTGTGTAATGAAAGATCAGCTTCTGTCCAGATATCCCAAGAGTTTGATAAGCAAACAGTGGACAAAGGCTGTGGTTGATTCAACAGTTGCACCAAAACTGAAGGTCCCCGGTCATGACAAGTTAGCACAGGTGGCTAGGTATTCTGCCCTCATATCAGAAGCAGCCAAAGCATGCTTAAACTACTCATTTTCAGAAGAAGGATTCAAGGTGGGAATGAATGAATTTGCAAGGCTGGTTCAAACCTCAAGGGAATTCAACACAGTTCCTCCTACGAACACATCAAATGTGCCTCCGAGTAGCAATGTTGTGAAGGACCCAAAAGTATCACGGACGAAGGGGATGCCTTCTAATCCTGCAACAAACGCAGAGAATGGGAAGAGAGAGCAGCGGCTGTGCGGAAAATGTTTAATGCCCAGTCACAACAGGCACACTTGTACAGTTGGTGATGAAGAAGGGGTTCCCACTCGTGCCAATGCAGAAACAGCAGATTCAGAGACTCAGATGATACCTTCAGTCCCTTATCCTGCACATTCAGTACCTCATCCTCCTCTTAATTTATCTATCTATCAACCCATGGAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

605

Amino Acids

68.96

Weight (kDa)

9.51

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 89 - 199 3.1e-13 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 979
AccI GTMKAC 1 cut(s) 234
AccII CGCG 2 cut(s) 40, 627
AciI CCGC 6 cut(s) 556, 771, 925, 1075, 1621, 1629
AclWI GGATC 1 cut(s) 1154
AcsI RAATTY 5 cut(s) 155, 422, 565, 1454, 1484
AcuI CTGAAG 4 cut(s) 921, 1084, 1352, 1728
AfaI GTAC 9 cut(s) 249, 477, 716, 827, 904, 970, 1119, 1669, 1770
AfiI CCNNNNNNNGG 3 cut(s) 137, 214, 979
AflIII ACRYGT 2 cut(s) 38, 976
AgeI ACCGGT 1 cut(s) 1120
AgsI TTSAA 7 cut(s) 146, 203, 366, 1314, 1438, 1472, 1489
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 1 cut(s) 100
AleI CACNNNNGTG 1 cut(s) 687
AluBI AGCT 8 cut(s) 515, 550, 592, 674, 751, 899, 1000, 1252
AluI AGCT 8 cut(s) 515, 550, 592, 674, 751, 899, 1000, 1252
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 2 cut(s) 1124, 1721
AlwI GGATC 1 cut(s) 1154
AlwNI CAGNNNCTG 2 cut(s) 1255, 1624
AoxI GGCC 2 cut(s) 149, 768
ApeKI GCWGC 6 cut(s) 176, 515, 819, 841, 1394, 1618
ApoI RAATTY 5 cut(s) 155, 422, 565, 1454, 1484
AsiGI ACCGGT 1 cut(s) 1120
Asp700I GAANNNNTTC 1 cut(s) 1689
AspA2I CCTAGG 1 cut(s) 479
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 4 cut(s) 768, 1104, 1336, 1546
AsuC2I CCSGG 1 cut(s) 1341
AsuHPI GGTGA 2 cut(s) 90, 1688
AvaII GGWCC 3 cut(s) 1104, 1336, 1546
AvrII CCTAGG 1 cut(s) 479
BaeGI GKGCMC 1 cut(s) 947
BarI GAAGNNNNNNTAC 4 cut(s) 218, 250, 1082, 1114
BauI CACGAG 1 cut(s) 1698
BbsI GAAGAC 2 cut(s) 210, 1064
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 6 cut(s) 163, 502, 806, 828, 1406, 1630
BccI CCATC 1 cut(s) 749
BcgI CGANNNNNNTGC 4 cut(s) 1139, 1173, 1555, 1589
BciT130I CCWGG 1 cut(s) 102
BcnI CCSGG 1 cut(s) 1341
BcoDI GTCTC 2 cut(s) 1124, 1721
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 5 cut(s) 480, 642, 662, 1026, 1368
BglII AGATCT 1 cut(s) 709
BisI GCNGC 8 cut(s) 177, 516, 771, 820, 842, 1395, 1619, 1622
BlnI CCTAGG 1 cut(s) 479
BlsI GCNGC 8 cut(s) 178, 517, 772, 821, 843, 1396, 1620, 1623
Bme1390I CCNGG 2 cut(s) 102, 1341
Bme18I GGWCC 3 cut(s) 1104, 1336, 1546
BmgT120I GGNCC 4 cut(s) 768, 1104, 1336, 1546
BmiI GGNNCC 4 cut(s) 1079, 1338, 1548, 1692
BmrFI CCNGG 2 cut(s) 102, 1341
BmrI ACTGGG 1 cut(s) 1641
BmsI GCATC 5 cut(s) 442, 667, 751, 1147, 1563
BmuI ACTGGG 1 cut(s) 1641
BpiI GAAGAC 2 cut(s) 210, 1064
BpuEI CTTGAG 1 cut(s) 1462
BpuMI CCSGG 1 cut(s) 1341
BsaJI CCNNGG 3 cut(s) 479, 1339, 1806
BsaWI WCCGGW 1 cut(s) 1120
BsaXI ACNNNNNCTCC 2 cut(s) 1483, 1513
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 214, 979
Bse118I RCCGGY 2 cut(s) 70, 1120
Bse1I ACTGG 2 cut(s) 381, 1647
Bse3DI GCAATG 2 cut(s) 337, 1540
BseBI CCWGG 1 cut(s) 102
BseDI CCNNGG 3 cut(s) 479, 1339, 1806
BseGI GGATG 6 cut(s) 760, 766, 789, 1183, 1578, 1774
BseLI CCNNNNNNNGG 3 cut(s) 137, 214, 979
BseMI GCAATG 2 cut(s) 337, 1540
BseMII CTCAG 2 cut(s) 80, 1745
BseNI ACTGG 2 cut(s) 381, 1647
BseRI GAGGAG 4 cut(s) 478, 751, 1234, 1770
BseSI GKGCMC 1 cut(s) 947
BseXI GCAGC 6 cut(s) 163, 502, 806, 828, 1406, 1630
BseYI CCCAGC 1 cut(s) 674
BsgI GTGCAG 3 cut(s) 162, 985, 1743
Bsh1236I CGCG 2 cut(s) 40, 627
BshFI GGCC 2 cut(s) 151, 770
BshTI ACCGGT 1 cut(s) 1120
BsiHKAI GWGCWC 1 cut(s) 582
BsiSI CCGG 3 cut(s) 71, 1121, 1341
BslFI GGGAC 4 cut(s) 586, 693, 1322, 1733
BslI CCNNNNNNNGG 3 cut(s) 137, 214, 979
BsmAI GTCTC 2 cut(s) 1124, 1721
BsmBI CGTCTC 1 cut(s) 1124
BsmFI GGGAC 4 cut(s) 586, 693, 1322, 1733
BsmI GAATGC 3 cut(s) 291, 518, 931
BsnI GGCC 2 cut(s) 151, 770
Bsp1286I GDGCHC 2 cut(s) 582, 947
Bsp1407I TGTACA 3 cut(s) 714, 902, 1667
Bsp143I GATC 3 cut(s) 709, 1146, 1246
Bsp19I CCATGG 1 cut(s) 1806
BspACI CCGC 6 cut(s) 556, 771, 925, 1075, 1621, 1629
BspANI GGCC 2 cut(s) 151, 770
BspCNI CTCAG 2 cut(s) 81, 1744
BspFNI CGCG 2 cut(s) 40, 627
BspHI TCATGA 2 cut(s) 586, 1345
BspLI GGNNCC 4 cut(s) 1079, 1338, 1548, 1692
BspPI GGATC 1 cut(s) 1154
BsrDI GCAATG 2 cut(s) 337, 1540
BsrFI RCCGGY 2 cut(s) 70, 1120
BsrGI TGTACA 3 cut(s) 714, 902, 1667
BsrI ACTGG 2 cut(s) 381, 1647
BssAI RCCGGY 2 cut(s) 70, 1120
BssECI CCNNGG 3 cut(s) 479, 1339, 1806
BssMI GATC 3 cut(s) 709, 1146, 1246
BssNAI GTATAC 1 cut(s) 235
BssSI CACGAG 1 cut(s) 1698
BssT1I CCWWGG 2 cut(s) 479, 1806
Bst1107I GTATAC 1 cut(s) 235
Bst2BI CACGAG 1 cut(s) 1698
Bst2UI CCWGG 1 cut(s) 102
Bst4CI ACNGT 7 cut(s) 247, 689, 813, 1290, 1318, 1495, 1672
Bst6I CTCTTC 2 cut(s) 728, 1604
BstAUI TGTACA 3 cut(s) 714, 902, 1667
BstC8I GCNNGC 6 cut(s) 398, 594, 672, 989, 993, 1405
BstDEI CTNAG 4 cut(s) 89, 729, 1064, 1731
BstDSI CCRYGG 1 cut(s) 1806
BstF5I GGATG 6 cut(s) 760, 766, 789, 1183, 1578, 1774
BstFNI CGCG 2 cut(s) 40, 627
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 3 cut(s) 712, 1149, 1249
BstMAI GTCTC 2 cut(s) 1124, 1721
BstMBI GATC 3 cut(s) 709, 1146, 1246
BstMWI GCNNNNNNNGC 7 cut(s) 624, 770, 997, 1364, 1400, 1595, 1715
BstNI CCWGG 1 cut(s) 102
BstNSI RCATGY 3 cut(s) 991, 1164, 1407
BstSCI CCNGG 2 cut(s) 100, 1339
BstSLI GKGCMC 1 cut(s) 947
BstUI CGCG 2 cut(s) 40, 627
BstV1I GCAGC 6 cut(s) 163, 502, 806, 828, 1406, 1630
BstV2I GAAGAC 2 cut(s) 210, 1064
BstX2I RGATCY 1 cut(s) 709
BstYI RGATCY 1 cut(s) 709
BstZ17I GTATAC 1 cut(s) 235
BsuRI GGCC 2 cut(s) 151, 770
BtgI CCRYGG 1 cut(s) 1806
BtsCI GGATG 6 cut(s) 760, 766, 789, 1183, 1578, 1774
BtsI GCAGTG 1 cut(s) 359
BtsIMutI CAGTG 3 cut(s) 359, 529, 1295
Cac8I GCNNGC 6 cut(s) 398, 594, 672, 989, 993, 1405
CaiI CAGNNNCTG 2 cut(s) 1255, 1624
CciI TCATGA 2 cut(s) 586, 1345
CfoI GCGC 1 cut(s) 629
Cfr10I RCCGGY 2 cut(s) 70, 1120
Cfr13I GGNCC 4 cut(s) 768, 1104, 1336, 1546
CseI GACGC 1 cut(s) 1141
Csp6I GTAC 9 cut(s) 248, 476, 715, 826, 903, 969, 1118, 1668, 1769
CspAI ACCGGT 1 cut(s) 1120
CspCI CAANNNNNGTGG 2 cut(s) 1284, 1319
CviQI GTAC 9 cut(s) 248, 476, 715, 826, 903, 969, 1118, 1668, 1769
DdeI CTNAG 4 cut(s) 89, 729, 1064, 1731
DpnI GATC 3 cut(s) 711, 1148, 1248
DpnII GATC 3 cut(s) 709, 1146, 1246
DraI TTTAAA 1 cut(s) 45
Eam1104I CTCTTC 2 cut(s) 728, 1604
EarI CTCTTC 2 cut(s) 728, 1604
EciI GGCGGA 1 cut(s) 940
Eco130I CCWWGG 2 cut(s) 479, 1806
Eco147I AGGCCT 1 cut(s) 151
Eco32I GATATC 1 cut(s) 1265
Eco47I GGWCC 3 cut(s) 1104, 1336, 1546
Eco57I CTGAAG 4 cut(s) 921, 1084, 1352, 1728
EcoO109I RGGNCCY 2 cut(s) 1336, 1546
EcoRI GAATTC 1 cut(s) 1484
EcoRII CCWGG 1 cut(s) 100
EcoRV GATATC 1 cut(s) 1265
EcoT14I CCWWGG 2 cut(s) 479, 1806
EcoT22I ATGCAT 2 cut(s) 888, 1162
ErhI CCWWGG 2 cut(s) 479, 1806
Esp3I CGTCTC 1 cut(s) 1124
FalI AAGNNNNNCTT 2 cut(s) 1236, 1268
FaqI GGGAC 4 cut(s) 586, 693, 1322, 1733
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 8 cut(s) 177, 516, 771, 820, 842, 1395, 1619, 1622
FokI GGATG 6 cut(s) 767, 773, 796, 1190, 1585, 1761
Fsp4HI GCNGC 8 cut(s) 177, 516, 771, 820, 842, 1395, 1619, 1622
FspBI CTAG 5 cut(s) 480, 642, 662, 1026, 1368
GlaI GCGC 1 cut(s) 628
GluI GCNGC 8 cut(s) 177, 516, 771, 820, 842, 1395, 1619, 1622
GsaI CCCAGC 1 cut(s) 678
HaeIII GGCC 2 cut(s) 151, 770
HapII CCGG 3 cut(s) 71, 1121, 1341
HgaI GACGC 1 cut(s) 1141
HhaI GCGC 1 cut(s) 629
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HincII GTYRAC 1 cut(s) 505
HindII GTYRAC 1 cut(s) 505
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 7 cut(s) 77, 803, 1222, 1310, 1434, 1721, 1729
HpaI GTTAAC 1 cut(s) 505
HpaII CCGG 3 cut(s) 71, 1121, 1341
HphI GGTGA 2 cut(s) 90, 1688
Hpy166II GTNNAC 7 cut(s) 235, 505, 637, 828, 1118, 1173, 1293
Hpy188I TCNGA 9 cut(s) 438, 865, 879, 940, 1390, 1426, 1527, 1726, 1734
Hpy188III TCNNGA 5 cut(s) 282, 587, 1216, 1260, 1346
Hpy8I GTNNAC 7 cut(s) 235, 505, 637, 828, 1118, 1173, 1293
Hpy99I CGWCG 2 cut(s) 627, 689
HpyCH4III ACNGT 7 cut(s) 247, 689, 813, 1290, 1318, 1495, 1672
HpyCH4IV ACGT 1 cut(s) 976
HpyF10VI GCNNNNNNNGC 7 cut(s) 624, 770, 997, 1364, 1400, 1595, 1715
HpyF3I CTNAG 4 cut(s) 89, 729, 1064, 1731
HpySE526I ACGT 1 cut(s) 976
HspAI GCGC 1 cut(s) 627
KspAI GTTAAC 1 cut(s) 505
Kzo9I GATC 3 cut(s) 709, 1146, 1246
LmnI GCTCC 2 cut(s) 448, 547
Lsp1109I GCAGC 6 cut(s) 163, 502, 806, 828, 1406, 1630
LweI GCATC 5 cut(s) 442, 667, 751, 1147, 1563
MaeI CTAG 5 cut(s) 480, 642, 662, 1026, 1368
MaeII ACGT 1 cut(s) 976
MaeIII GTNAC 6 cut(s) 31, 804, 891, 1200, 1223, 1649
MalI GATC 3 cut(s) 711, 1148, 1248
MboI GATC 3 cut(s) 709, 1146, 1246
MflI RGATCY 1 cut(s) 709
MhlI GDGCHC 2 cut(s) 582, 947
MluCI AATT 8 cut(s) 6, 155, 182, 422, 565, 1454, 1484, 1786
MluI ACGCGT 1 cut(s) 38
MlyI GAGTC 3 cut(s) 812, 1231, 1723
MmeI TCCRAC 1 cut(s) 857
Mph1103I ATGCAT 2 cut(s) 888, 1162
MroXI GAANNNNTTC 1 cut(s) 1689
MseI TTAA 6 cut(s) 44, 186, 504, 1409, 1640, 1785
MslI CAYNNNNRTG 3 cut(s) 405, 585, 687
MspA1I CMGCKG 1 cut(s) 1621
MspI CCGG 3 cut(s) 71, 1121, 1341
MspR9I CCNGG 2 cut(s) 102, 1341
Mva1269I GAATGC 3 cut(s) 291, 518, 931
MvaI CCWGG 1 cut(s) 102
MvnI CGCG 2 cut(s) 40, 627
MwoI GCNNNNNNNGC 7 cut(s) 624, 770, 997, 1364, 1400, 1595, 1715
NciI CCSGG 1 cut(s) 1341
NcoI CCATGG 1 cut(s) 1806
NdeII GATC 3 cut(s) 709, 1146, 1246
NlaIV GGNNCC 4 cut(s) 1079, 1338, 1548, 1692
NmuCI GTSAC 4 cut(s) 804, 1200, 1223, 1649
NsiI ATGCAT 2 cut(s) 888, 1162
NspI RCATGY 3 cut(s) 991, 1164, 1407
OliI CACNNNNGTG 1 cut(s) 687
PaeI GCATGC 2 cut(s) 991, 1407
PagI TCATGA 2 cut(s) 586, 1345
PceI AGGCCT 1 cut(s) 151
PctI GAATGC 3 cut(s) 291, 518, 931
PdmI GAANNNNTTC 1 cut(s) 1689
PfeI GAWTC 4 cut(s) 77, 1310, 1434, 1721
PflFI GACNNNGTC 1 cut(s) 689
PflMI CCANNNNNTGG 1 cut(s) 979
PinAI ACCGGT 1 cut(s) 1120
PkrI GCNGC 8 cut(s) 178, 517, 772, 821, 843, 1396, 1620, 1623
PleI GAGTC 3 cut(s) 811, 1230, 1723
PpsI GAGTC 3 cut(s) 811, 1230, 1723
PpuMI RGGWCCY 2 cut(s) 1336, 1546
Psp5II RGGWCCY 2 cut(s) 1336, 1546
Psp6I CCWGG 1 cut(s) 100
PspFI CCCAGC 1 cut(s) 674
PspGI CCWGG 1 cut(s) 100
PspN4I GGNNCC 4 cut(s) 1079, 1338, 1548, 1692
PspPI GGNCC 4 cut(s) 768, 1104, 1336, 1546
PspPPI RGGWCCY 2 cut(s) 1336, 1546
PstNI CAGNNNCTG 2 cut(s) 1255, 1624
PsuI RGATCY 1 cut(s) 709
PsyI GACNNNGTC 1 cut(s) 689
RsaI GTAC 9 cut(s) 249, 477, 716, 827, 904, 970, 1119, 1669, 1770
RsaNI GTAC 9 cut(s) 248, 476, 715, 826, 903, 969, 1118, 1668, 1769
RseI CAYNNNNRTG 3 cut(s) 405, 585, 687
SaqAI TTAA 6 cut(s) 44, 186, 504, 1409, 1640, 1785
SatI GCNGC 8 cut(s) 177, 516, 771, 820, 842, 1395, 1619, 1622
Sau3AI GATC 3 cut(s) 709, 1146, 1246
Sau96I GGNCC 4 cut(s) 768, 1104, 1336, 1546
SchI GAGTC 3 cut(s) 812, 1231, 1723
ScrFI CCNGG 2 cut(s) 102, 1341
SduI GDGCHC 2 cut(s) 582, 947
SfaNI GCATC 5 cut(s) 442, 667, 751, 1147, 1563
SinI GGWCC 3 cut(s) 1104, 1336, 1546
SmiMI CAYNNNNRTG 3 cut(s) 405, 585, 687
SmlI CTYRAG 1 cut(s) 1477
SmoI CTYRAG 1 cut(s) 1477
SpeI ACTAGT 1 cut(s) 641
SphI GCATGC 2 cut(s) 991, 1407
Sse9I AATT 8 cut(s) 6, 155, 182, 422, 565, 1454, 1484, 1786
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 6 cut(s) 556, 771, 925, 1075, 1621, 1629
SspMI CTAG 5 cut(s) 480, 642, 662, 1026, 1368
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 100, 1339
StyI CCWWGG 2 cut(s) 479, 1806
TaaI ACNGT 7 cut(s) 247, 689, 813, 1290, 1318, 1495, 1672
TaiI ACGT 1 cut(s) 979
TaqI TCGA 4 cut(s) 392, 461, 1149, 1215
TasI AATT 8 cut(s) 6, 155, 182, 422, 565, 1454, 1484, 1786
TatI WGTACW 4 cut(s) 714, 825, 902, 1667
TauI GCSGC 2 cut(s) 773, 1624
TfiI GAWTC 4 cut(s) 77, 1310, 1434, 1721
Tru1I TTAA 6 cut(s) 44, 186, 504, 1409, 1640, 1785
Tru9I TTAA 6 cut(s) 44, 186, 504, 1409, 1640, 1785
TscAI CASTG 3 cut(s) 359, 529, 1295
TseFI GTSAC 4 cut(s) 804, 1200, 1223, 1649
TseI GCWGC 6 cut(s) 176, 515, 819, 841, 1394, 1618
Tsp45I GTSAC 4 cut(s) 804, 1200, 1223, 1649
TspDTI ATGAA 9 cut(s) 239, 401, 688, 800, 1177, 1256, 1463, 1467, 1695
TspGWI ACGGA 3 cut(s) 319, 1190, 1576
TspRI CASTG 3 cut(s) 359, 529, 1295
Tth111I GACNNNGTC 1 cut(s) 689
Van91I CCANNNNNTGG 1 cut(s) 979
VpaK11BI GGWCC 3 cut(s) 1104, 1336, 1546
XapI RAATTY 5 cut(s) 155, 422, 565, 1454, 1484
XceI RCATGY 3 cut(s) 991, 1164, 1407
XmaJI CCTAGG 1 cut(s) 479
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 1689
XspI CTAG 5 cut(s) 480, 642, 662, 1026, 1368
Zsp2I ATGCAT 2 cut(s) 888, 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.