Rmu_sc0011079.1_g000009

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011079.1
OG0000074
Physical Location & Seq
Forward (+)
23720 .. 24697
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011079.1_g000009.1.cds

Sequence Viewer

Length: 978 bp
atggagaataatgaaggaggtgtatgctacactgaccatctgtaccacagctcattcccatcagacgaagaagtatctgatgatgatgggttattacaaattggtgaagatgaggaagggttcttttatgatggaggagagaaagggcttggtcatacatcagaaattggtaatggtaaatgtcatttgatggatatggagacattagatggaacgaatgtcggtgggtgtgtagacttaaatggcaaggattacagtaatttgaacatggatgatatgaagaatgttgtgttcagcagcgtatgtgaagctgaaaagttctatcatttatactctcgtgttattggattcagcacaaggaaggacaggaaggttagagcatatcgttctgaatttgtcataagagagtgggtatgttcaaaacagggcaaagcaacgattaacgccaagaaacagggactgaaagaaaaggggaagactctgctccaagctgagaaaaagaagatgaagaggaatcaatgtccaaggggtaagagatatagccgagttggatgcatggccggatttggaattcgatactgcaaggaaaggaagaagtattttgtatcaaagttcataaccaatcacaatcatgatgttgctgtttcagaagaggttcaattccttcgttctcaccgaggagtgactgacagcgtcattgcccaggttgaggctctacagaaagcacaagtgcacataagccggatatatgaaaattttggttccatgttagttttttctcattcaaagaatcacagttgggttatcaatgaaaaagtttccaagtttagctgcagtatagcacctaagtttttgatcagcaatgctgacactgatattttgttacttagcaatgggacctctggggtggagtggttgtatccaatggtttcgaacctaacagttcaaactctttgggagagcattactttgttttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

325

Amino Acids

36.82

Weight (kDa)

7.59

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 3 cut(s) 392, 570, 754
AfaI GTAC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 709
AgsI TTSAA 5 cut(s) 265, 420, 659, 786, 947
AjnI CCWGG 1 cut(s) 702
AluBI AGCT 4 cut(s) 51, 311, 491, 831
AluI AGCT 4 cut(s) 51, 311, 491, 831
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 1 cut(s) 194
Alw44I GTGCAC 1 cut(s) 731
AlwNI CAGNNNCTG 1 cut(s) 460
AoxI GGCC 1 cut(s) 558
ApaLI GTGCAC 1 cut(s) 731
ApeKI GCWGC 2 cut(s) 297, 831
ApoI RAATTY 3 cut(s) 392, 570, 754
Asp700I GAANNNNTTC 1 cut(s) 654
AspS9I GGNCC 1 cut(s) 897
AsuHPI GGTGA 2 cut(s) 116, 665
AsuII TTCGAA 1 cut(s) 932
AvaII GGWCC 1 cut(s) 897
BaeGI GKGCMC 1 cut(s) 735
BauI CACGAG 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 2 cut(s) 309, 818
BccI CCATC 6 cut(s) 45, 67, 80, 125, 184, 203
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 1 cut(s) 704
BciVI GTATCC 1 cut(s) 930
BclI TGATCA 1 cut(s) 855
BcoDI GTCTC 1 cut(s) 194
BfmI CTRYAG 2 cut(s) 716, 832
BfuI GTATCC 1 cut(s) 930
BisI GCNGC 2 cut(s) 298, 832
BlsI GCNGC 2 cut(s) 299, 833
Bme1390I CCNGG 1 cut(s) 704
Bme18I GGWCC 1 cut(s) 897
BmgT120I GGNCC 1 cut(s) 897
BmiI GGNNCC 2 cut(s) 763, 898
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 1 cut(s) 542
BpiI GAAGAC 1 cut(s) 482
Bpu14I TTCGAA 1 cut(s) 932
BsaJI CCNNGG 3 cut(s) 524, 676, 702
BsaXI ACNNNNNCTCC 2 cut(s) 902, 932
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse3DI GCAATG 3 cut(s) 696, 868, 898
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 3 cut(s) 524, 676, 702
BseGI GGATG 2 cut(s) 277, 557
BseLI CCNNNNNNNGG 1 cut(s) 709
BseMI GCAATG 3 cut(s) 696, 868, 898
BseMII CTCAG 1 cut(s) 483
BseRI GAGGAG 2 cut(s) 150, 693
BseSI GKGCMC 1 cut(s) 735
BseXI GCAGC 2 cut(s) 309, 818
BshFI GGCC 1 cut(s) 560
BsiHKAI GWGCWC 1 cut(s) 735
BsiSI CCGG 2 cut(s) 561, 742
BslFI GGGAC 2 cut(s) 471, 910
BslI CCNNNNNNNGG 1 cut(s) 709
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 471, 910
BsnI GGCC 1 cut(s) 560
Bsp119I TTCGAA 1 cut(s) 932
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 1 cut(s) 855
BspANI GGCC 1 cut(s) 560
BspCNI CTCAG 1 cut(s) 484
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 2 cut(s) 763, 898
BspMAI CTGCAG 1 cut(s) 836
BspT104I TTCGAA 1 cut(s) 932
BsrDI GCAATG 3 cut(s) 696, 868, 898
BssECI CCNNGG 3 cut(s) 524, 676, 702
BssMI GATC 1 cut(s) 855
BssSI CACGAG 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 524
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 3 cut(s) 257, 797, 943
Bst6I CTCTTC 2 cut(s) 503, 645
BstBI TTCGAA 1 cut(s) 932
BstDEI CTNAG 3 cut(s) 492, 846, 887
BstF5I GGATG 2 cut(s) 277, 557
BstKTI GATC 1 cut(s) 858
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 1 cut(s) 855
BstNI CCWGG 1 cut(s) 704
BstSCI CCNGG 1 cut(s) 702
BstSFI CTRYAG 2 cut(s) 716, 832
BstSLI GKGCMC 1 cut(s) 735
BstV1I GCAGC 2 cut(s) 309, 818
BstV2I GAAGAC 1 cut(s) 482
BsuI GTATCC 1 cut(s) 930
BsuRI GGCC 1 cut(s) 560
BtsCI GGATG 2 cut(s) 277, 557
BtsIMutI CAGTG 2 cut(s) 30, 870
CaiI CAGNNNCTG 1 cut(s) 460
CciI TCATGA 1 cut(s) 631
Cfr13I GGNCC 1 cut(s) 897
CseI GACGC 1 cut(s) 682
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 268, 556, 632, 766
CviJI RGCY 9 cut(s) 51, 148, 311, 491, 543, 560, 713, 741, 831
CviKI_1 RGCY 9 cut(s) 51, 148, 311, 491, 543, 560, 713, 741, 831
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 3 cut(s) 492, 846, 887
DpnI GATC 1 cut(s) 857
DpnII GATC 1 cut(s) 855
EaeI YGGCCR 1 cut(s) 558
Eam1104I CTCTTC 2 cut(s) 503, 645
EarI CTCTTC 2 cut(s) 503, 645
Eco130I CCWWGG 1 cut(s) 524
Eco47I GGWCC 1 cut(s) 897
EcoO109I RGGNCCY 1 cut(s) 897
EcoRI GAATTC 1 cut(s) 570
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 524
EcoT22I ATGCAT 1 cut(s) 557
ErhI CCWWGG 1 cut(s) 524
FaeI CATG 4 cut(s) 271, 559, 635, 769
FaqI GGGAC 2 cut(s) 471, 910
FatI CATG 4 cut(s) 267, 555, 631, 765
FbaI TGATCA 1 cut(s) 855
FblI GTMKAC 1 cut(s) 234
Fnu4HI GCNGC 2 cut(s) 298, 832
FokI GGATG 2 cut(s) 284, 564
Fsp4HI GCNGC 2 cut(s) 298, 832
GluI GCNGC 2 cut(s) 298, 832
HaeIII GGCC 1 cut(s) 560
HapII CCGG 2 cut(s) 561, 742
HgaI GACGC 1 cut(s) 682
Hin1II CATG 4 cut(s) 271, 559, 635, 769
HinfI GANTC 4 cut(s) 348, 478, 514, 790
HpaII CCGG 2 cut(s) 561, 742
HphI GGTGA 2 cut(s) 116, 665
Hpy166II GTNNAC 2 cut(s) 235, 733
Hpy188I TCNGA 5 cut(s) 64, 79, 163, 391, 649
Hpy188III TCNNGA 1 cut(s) 632
Hpy8I GTNNAC 2 cut(s) 235, 733
HpyAV CCTTC 5 cut(s) 8, 110, 355, 364, 674
HpyCH4III ACNGT 3 cut(s) 257, 797, 943
HpyCH4V TGCA 4 cut(s) 555, 582, 733, 834
HpyF3I CTNAG 3 cut(s) 492, 846, 887
Hsp92II CATG 4 cut(s) 271, 559, 635, 769
Ksp22I TGATCA 1 cut(s) 855
Kzo9I GATC 1 cut(s) 855
LmnI GCTCC 1 cut(s) 489
LpnPI CCDG 8 cut(s) 352, 410, 440, 574, 689, 716, 755, 888
Lsp1109I GCAGC 2 cut(s) 309, 818
LweI GCATC 1 cut(s) 542
MaeIII GTNAC 2 cut(s) 682, 882
MalI GATC 1 cut(s) 857
MboI GATC 1 cut(s) 855
MboII GAAGA 8 cut(s) 80, 119, 292, 487, 514, 520, 604, 662
MhlI GDGCHC 1 cut(s) 735
MluCI AATT 7 cut(s) 99, 165, 259, 392, 570, 659, 754
MlyI GAGTC 1 cut(s) 472
MmeI TCCRAC 1 cut(s) 529
MnlI CCTC 8 cut(s) 11, 106, 128, 504, 646, 671, 703, 910
Mph1103I ATGCAT 1 cut(s) 557
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 2 cut(s) 239, 441
MslI CAYNNNNRTG 1 cut(s) 630
MspI CCGG 2 cut(s) 561, 742
MspR9I CCNGG 1 cut(s) 704
MvaI CCWGG 1 cut(s) 704
NdeII GATC 1 cut(s) 855
NlaIII CATG 4 cut(s) 271, 559, 635, 769
NlaIV GGNNCC 2 cut(s) 763, 898
NmeAIII GCCGAG 1 cut(s) 569
NmuCI GTSAC 1 cut(s) 682
NsiI ATGCAT 1 cut(s) 557
NspV TTCGAA 1 cut(s) 932
PagI TCATGA 1 cut(s) 631
PcsI WCGNNNNNNNCGW 1 cut(s) 673
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 3 cut(s) 348, 514, 790
PflFI GACNNNGTC 1 cut(s) 692
PkrI GCNGC 2 cut(s) 299, 833
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PpuMI RGGWCCY 1 cut(s) 897
Psp5II RGGWCCY 1 cut(s) 897
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 2 cut(s) 763, 898
PspPI GGNCC 1 cut(s) 897
PspPPI RGGWCCY 1 cut(s) 897
PstI CTGCAG 1 cut(s) 836
PstNI CAGNNNCTG 1 cut(s) 460
PsyI GACNNNGTC 1 cut(s) 692
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 630
SaqAI TTAA 2 cut(s) 239, 441
SatI GCNGC 2 cut(s) 298, 832
Sau3AI GATC 1 cut(s) 855
Sau96I GGNCC 1 cut(s) 897
SchI GAGTC 1 cut(s) 472
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 1 cut(s) 735
SfaNI GCATC 1 cut(s) 542
SfcI CTRYAG 2 cut(s) 716, 832
SfuI TTCGAA 1 cut(s) 932
SinI GGWCC 1 cut(s) 897
SmiMI CAYNNNNRTG 1 cut(s) 630
Sse9I AATT 7 cut(s) 99, 165, 259, 392, 570, 659, 754
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 1 cut(s) 524
TaaI ACNGT 3 cut(s) 257, 797, 943
TaqI TCGA 2 cut(s) 574, 932
TasI AATT 7 cut(s) 99, 165, 259, 392, 570, 659, 754
TfiI GAWTC 3 cut(s) 348, 514, 790
Tru1I TTAA 2 cut(s) 239, 441
Tru9I TTAA 2 cut(s) 239, 441
TscAI CASTG 2 cut(s) 37, 877
TseFI GTSAC 1 cut(s) 682
TseI GCWGC 2 cut(s) 297, 831
Tsp45I GTSAC 1 cut(s) 682
TspDTI ATGAA 6 cut(s) 27, 293, 521, 604, 765, 825
TspRI CASTG 2 cut(s) 37, 877
Tth111I GACNNNGTC 1 cut(s) 692
VneI GTGCAC 1 cut(s) 731
VpaK11BI GGWCC 1 cut(s) 897
XapI RAATTY 3 cut(s) 392, 570, 754
XmiI GTMKAC 1 cut(s) 234
XmnI GAANNNNTTC 1 cut(s) 654
Zsp2I ATGCAT 1 cut(s) 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.