Rorug04G0055600

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000074
Physical Location & Seq
Forward (+)
8754113 .. 8755369
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0055600.1

Sequence Viewer

Length: 1257 bp
ATGGCTCTCAAGGTATCGAATTCCAGACTCACAAGGAGAGAAGGATCCGTTTATGCAAGAAGACCTGCTTCCGAAACCGTCTGCAAGTTTTGGGCGACGGGTAGATGCCTCAAGAAAGAGTGCCGGTTCCTACACGCTGACCCGGAACAAAAGACTCTTGCTTTAATGGAGGAGGAGGCAAAATCTTTGGGGAAAGCATCTGATTCTGCTACTGTTAATGTTAATGTTGAGAAAAGCATTGGTACCCATAAAGAGAAAGCAAAGGCCGAAGCAGTCTGCAAGTTCTGGGCAGATGGGAAGTGTGTAAGACGATGGTGCCCTTATTTGCACAGTTGGTTCCGTGGAGAAGGCTTTTCTTCCTTGGCAAAGCTCCAAGGCCATAAGAAGGGGATAACCGGAATTGTGCTTCCTGAGGGAAGTAGCAGTCTCTATTCTGCTGCCAAAGACGGAACCGTTAGGGTTTGGGACTGCAACACTGGTGAATGCAGCAGGGTAATCAATCTTGGTGCTGAAGCAGGCTGCTTGATTAGTAAGGGTGTGTGGATTTTCTGCGGTGCTTCCAATCTTGTCAAGGCGTGGAATATTGAGTCCAATGTTGAATTTACCCTAGCTGGACCTGTTGGTCAAATCCATGCCATGGAAGTTGGGAATGATATGCTATTTGCTGGGGCAGAGGAGGGTGTTATATATGTGTGGAAAGACAAAGCCTGTTCCGATGCTAAAGCAAATCCATTTCACCCTCATCAGGCTCTCAGTGGCCACACTGCTGCTGTGGTTTCTTTAAGGGTTGGAAATATCAGGCTCTACTCAGGTTCTGTGGACCATACAATAAGGGTGTGGAATCTGGACACTTTGGAGTGTGCTATGACTCTAAATGGACATTCTGATGCTGTGACGTCTCTTATATGTTGGACCACATTTCTGATCTCATGCTCATTAGACCACACGATAAAGGTGTGGACTATGTGTAAAGGAGGCAACATTGAAGAAATCTACACTCACACTGAAGAAGACGGTCTTCTTGCTCTCTCTGGAATGCATGATGCTGAAGATAAACCAGTCCTACTTTGCTCATCAAAAGACAATTCTGTCCGCATATATGATTTGCCATCCTTTGATGAGAGGGGAAGATTATTTGCAAAACGAGTAGTTCAGGCTATTCAAGTAGGCCCTGGAGGACTGTTCTTTACTGGGGATGAAACTGGTGGACTTTCCGTGTGGAAGTGGTTGGAACCAGCAATCAAACAAGAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

418

Amino Acids

45.79

Weight (kDa)

7.16

Isoelectric Point (pI)

40.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_WDR5 PF25175 116 - 166 3.1e-07 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 120 - 166 3.2e-07 WDR3 first beta-propeller domain
WD40 PF00400 120 - 156 2.9e-06 WD domain, G-beta repeat
WD40_Prp19 PF24814 120 - 167 6.9e-06 Prp19 WD40 domain
Beta-prop_THOC3 PF25174 121 - 262 9.6e-10 THOC3 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 140 - 371 3.9e-06 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_1st PF25173 182 - 369 1.8e-22 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 182 - 336 1.5e-11 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 182 - 409 1.2e-11 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 184 - 369 5.5e-19 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 187 - 336 3.9e-10 TEP-1 second beta-propeller
Beta-prop_IP5PC_F PF23754 212 - 302 1.6e-06 IP5P C-F beta-propeller
WD40_Prp19 PF24814 247 - 301 4.5e-06 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 249 - 368 5.2e-11 WDR3 second beta-propeller domain
Beta-prop_SCAP PF24017 253 - 335 4.2e-11 SCAP Beta-propeller
Beta-prop_THOC3 PF25174 267 - 409 1.4e-15 THOC3 beta-propeller domain
WD40_Prp19 PF24814 268 - 408 1.4e-11 Prp19 WD40 domain
WD40 PF00400 286 - 320 4.9e-06 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 621, 1088
AatII GACGTC 1 cut(s) 899
Acc36I ACCTGC 1 cut(s) 73
Acc65I GGTACC 1 cut(s) 242
AccB1I GGYRCC 2 cut(s) 242, 315
AccB7I CCANNNNNTGG 1 cut(s) 637
AciI CCGC 2 cut(s) 552, 1093
AclWI GGATC 2 cut(s) 39, 52
AcoI YGGCCR 1 cut(s) 757
AcsI RAATTY 2 cut(s) 19, 599
AcuI CTGAAG 3 cut(s) 531, 1026, 1068
AcyI GRCGYC 1 cut(s) 896
AfaI GTAC 1 cut(s) 244
AfiI CCNNNNNNNGG 3 cut(s) 385, 637, 745
AgsI TTSAA 3 cut(s) 599, 986, 1163
AjnI CCWGG 1 cut(s) 1171
AluBI AGCT 2 cut(s) 370, 611
AluI AGCT 2 cut(s) 370, 611
Alw26I GTCTC 2 cut(s) 431, 903
AlwI GGATC 2 cut(s) 39, 52
AlwNI CAGNNNCTG 1 cut(s) 815
AoxI GGCC 4 cut(s) 264, 376, 757, 1168
ApeKI GCWGC 4 cut(s) 437, 486, 519, 767
ApoI RAATTY 2 cut(s) 19, 599
Asp718I GGTACC 1 cut(s) 242
AspS9I GGNCC 4 cut(s) 614, 820, 912, 1169
AsuC2I CCSGG 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 491, 728
AvaII GGWCC 3 cut(s) 614, 820, 912
AxyI CCTNAGG 1 cut(s) 411
BaeGI GKGCMC 1 cut(s) 320
BalI TGGCCA 1 cut(s) 759
BamHI GGATCC 1 cut(s) 44
BanI GGYRCC 2 cut(s) 242, 315
BbsI GAAGAC 3 cut(s) 67, 1010, 1017
BbvI GCAGC 4 cut(s) 424, 498, 506, 754
BccI CCATC 3 cut(s) 287, 306, 1117
BciT130I CCWGG 1 cut(s) 1173
BcnI CCSGG 1 cut(s) 143
BcoDI GTCTC 2 cut(s) 431, 903
BfaI CTAG 1 cut(s) 608
BfuAI ACCTGC 1 cut(s) 73
BisI GCNGC 4 cut(s) 438, 487, 520, 768
BlsI GCNGC 4 cut(s) 439, 488, 521, 769
Bme1390I CCNGG 2 cut(s) 143, 1173
Bme18I GGWCC 3 cut(s) 614, 820, 912
BmgT120I GGNCC 4 cut(s) 614, 820, 912, 1169
BmiI GGNNCC 7 cut(s) 46, 128, 244, 317, 338, 451, 1233
BmrFI CCNGG 2 cut(s) 143, 1173
BmrI ACTGGG 1 cut(s) 1200
BmsI GCATC 5 cut(s) 95, 206, 706, 877, 1033
BmuI ACTGGG 1 cut(s) 1200
BpiI GAAGAC 3 cut(s) 67, 1010, 1017
BpmI CTGGAG 1 cut(s) 1194
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 896
BsaJI CCNNGG 5 cut(s) 340, 360, 373, 636, 1171
BsaWI WCCGGW 1 cut(s) 395
Bsc4I CCNNNNNNNGG 3 cut(s) 385, 637, 745
Bse118I RCCGGY 1 cut(s) 123
Bse1I ACTGG 4 cut(s) 481, 1058, 1195, 1207
Bse21I CCTNAGG 1 cut(s) 411
BseBI CCWGG 1 cut(s) 1173
BseDI CCNNGG 5 cut(s) 340, 360, 373, 636, 1171
BseGI GGATG 2 cut(s) 1109, 1201
BseLI CCNNNNNNNGG 3 cut(s) 385, 637, 745
BseMII CTCAG 3 cut(s) 402, 766, 822
BseNI ACTGG 4 cut(s) 481, 1058, 1195, 1207
BseRI GAGGAG 3 cut(s) 185, 188, 689
BseSI GKGCMC 1 cut(s) 320
BseXI GCAGC 4 cut(s) 424, 498, 506, 754
BseYI CCCAGC 1 cut(s) 665
BshFI GGCC 4 cut(s) 266, 378, 759, 1170
BshNI GGYRCC 2 cut(s) 242, 315
BsiSI CCGG 3 cut(s) 124, 143, 396
BslFI GGGAC 1 cut(s) 479
BslI CCNNNNNNNGG 3 cut(s) 385, 637, 745
BsmAI GTCTC 2 cut(s) 431, 903
BsmBI CGTCTC 1 cut(s) 903
BsmFI GGGAC 1 cut(s) 479
BsmI GAATGC 2 cut(s) 488, 1041
BsnI GGCC 4 cut(s) 266, 378, 759, 1170
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 2 cut(s) 44, 924
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 2 cut(s) 552, 1093
BspANI GGCC 4 cut(s) 266, 378, 759, 1170
BspCNI CTCAG 3 cut(s) 403, 765, 821
BspLI GGNNCC 7 cut(s) 46, 128, 244, 317, 338, 451, 1233
BspMI ACCTGC 1 cut(s) 73
BspPI GGATC 2 cut(s) 39, 52
BspT107I GGYRCC 2 cut(s) 242, 315
BsrFI RCCGGY 1 cut(s) 123
BsrI ACTGG 4 cut(s) 481, 1058, 1195, 1207
BssAI RCCGGY 1 cut(s) 123
BssECI CCNNGG 5 cut(s) 340, 360, 373, 636, 1171
BssMI GATC 2 cut(s) 44, 924
BssNI GRCGYC 1 cut(s) 896
BssT1I CCWWGG 3 cut(s) 360, 373, 636
Bst2UI CCWGG 1 cut(s) 1173
Bst4CI ACNGT 6 cut(s) 79, 214, 332, 454, 1016, 1182
BstACI GRCGYC 1 cut(s) 896
BstC8I GCNNGC 1 cut(s) 517
BstDEI CTNAG 3 cut(s) 411, 752, 808
BstDSI CCRYGG 2 cut(s) 340, 636
BstF5I GGATG 2 cut(s) 1109, 1201
BstKTI GATC 2 cut(s) 47, 927
BstMAI GTCTC 2 cut(s) 431, 903
BstMBI GATC 2 cut(s) 44, 924
BstNI CCWGG 1 cut(s) 1173
BstSCI CCNGG 2 cut(s) 141, 1171
BstSLI GKGCMC 1 cut(s) 320
BstV1I GCAGC 4 cut(s) 424, 498, 506, 754
BstV2I GAAGAC 3 cut(s) 67, 1010, 1017
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 4 cut(s) 266, 378, 759, 1170
BtgI CCRYGG 2 cut(s) 340, 636
BtsCI GGATG 2 cut(s) 1109, 1201
BtsI GCAGTG 1 cut(s) 762
BtsIMutI CAGTG 4 cut(s) 474, 760, 762, 1002
BveI ACCTGC 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 517
CaiI CAGNNNCTG 1 cut(s) 815
Cfr10I RCCGGY 1 cut(s) 123
Cfr13I GGNCC 4 cut(s) 614, 820, 912, 1169
Csp6I GTAC 1 cut(s) 243
CviAII CATG 4 cut(s) 632, 637, 930, 1040
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 3 cut(s) 411, 752, 808
DpnI GATC 2 cut(s) 46, 926
DpnII GATC 2 cut(s) 44, 924
DrdI GACNNNNNNGTC 2 cut(s) 621, 1088
DseDI GACNNNNNNGTC 2 cut(s) 621, 1088
EaeI YGGCCR 1 cut(s) 757
Eco130I CCWWGG 3 cut(s) 360, 373, 636
Eco47I GGWCC 3 cut(s) 614, 820, 912
Eco57I CTGAAG 3 cut(s) 531, 1026, 1068
Eco81I CCTNAGG 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 1169
EcoRI GAATTC 1 cut(s) 19
EcoRII CCWGG 1 cut(s) 1171
EcoT14I CCWWGG 3 cut(s) 360, 373, 636
EcoT22I ATGCAT 1 cut(s) 1041
ErhI CCWWGG 3 cut(s) 360, 373, 636
Esp3I CGTCTC 1 cut(s) 903
FaeI CATG 4 cut(s) 635, 640, 933, 1043
FalI AAGNNNNNCTT 4 cut(s) 52, 84, 1002, 1034
FaqI GGGAC 1 cut(s) 479
FatI CATG 4 cut(s) 631, 636, 929, 1039
Fnu4HI GCNGC 4 cut(s) 438, 487, 520, 768
FokI GGATG 2 cut(s) 1096, 1208
Fsp4HI GCNGC 4 cut(s) 438, 487, 520, 768
FspBI CTAG 1 cut(s) 608
GluI GCNGC 4 cut(s) 438, 487, 520, 768
GsaI CCCAGC 1 cut(s) 669
GsuI CTGGAG 1 cut(s) 1194
HaeIII GGCC 4 cut(s) 266, 378, 759, 1170
HapII CCGG 3 cut(s) 124, 143, 396
Hin1I GRCGYC 1 cut(s) 896
Hin1II CATG 4 cut(s) 635, 640, 933, 1043
HinfI GANTC 7 cut(s) 27, 154, 203, 587, 841, 868, 1250
HpaII CCGG 3 cut(s) 124, 143, 396
HphI GGTGA 2 cut(s) 491, 728
Hpy166II GTNNAC 3 cut(s) 820, 960, 1208
Hpy188I TCNGA 5 cut(s) 73, 202, 715, 886, 924
Hpy188III TCNNGA 6 cut(s) 24, 112, 410, 845, 1032, 1254
Hpy8I GTNNAC 3 cut(s) 820, 960, 1208
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 3 cut(s) 35, 341, 379
HpyCH4III ACNGT 6 cut(s) 79, 214, 332, 454, 1016, 1182
HpyCH4IV ACGT 1 cut(s) 896
HpyCH4V TGCA 8 cut(s) 56, 84, 279, 328, 471, 486, 1039, 1139
HpyF3I CTNAG 3 cut(s) 411, 752, 808
HpySE526I ACGT 1 cut(s) 896
Hsp92I GRCGYC 1 cut(s) 896
Hsp92II CATG 4 cut(s) 635, 640, 933, 1043
KpnI GGTACC 1 cut(s) 246
Kzo9I GATC 2 cut(s) 44, 924
LmnI GCTCC 1 cut(s) 375
Lsp1109I GCAGC 4 cut(s) 424, 498, 506, 754
LweI GCATC 5 cut(s) 95, 206, 706, 877, 1033
MaeI CTAG 1 cut(s) 608
MaeII ACGT 1 cut(s) 896
MaeIII GTNAC 1 cut(s) 892
MalI GATC 2 cut(s) 46, 926
MboI GATC 2 cut(s) 44, 924
MboII GAAGA 8 cut(s) 72, 348, 998, 1010, 1019, 1022, 1061, 1140
MflI RGATCY 1 cut(s) 44
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 4 cut(s) 19, 399, 599, 1084
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 4 cut(s) 21, 148, 596, 862
MmeI TCCRAC 3 cut(s) 769, 890, 1209
Mox20I TGGCCA 1 cut(s) 759
Mph1103I ATGCAT 1 cut(s) 1041
MscI TGGCCA 1 cut(s) 759
MseI TTAA 4 cut(s) 164, 216, 222, 782
MslI CAYNNNNRTG 1 cut(s) 885
Msp20I TGGCCA 1 cut(s) 759
MspI CCGG 3 cut(s) 124, 143, 396
MspR9I CCNGG 2 cut(s) 143, 1173
Mva1269I GAATGC 2 cut(s) 488, 1041
MvaI CCWGG 1 cut(s) 1173
NciI CCSGG 1 cut(s) 143
NcoI CCATGG 1 cut(s) 636
NdeII GATC 2 cut(s) 44, 924
NlaIII CATG 4 cut(s) 635, 640, 933, 1043
NlaIV GGNNCC 7 cut(s) 46, 128, 244, 317, 338, 451, 1233
NmuCI GTSAC 1 cut(s) 892
NsiI ATGCAT 1 cut(s) 1041
PctI GAATGC 2 cut(s) 488, 1041
PfeI GAWTC 2 cut(s) 203, 841
PflMI CCANNNNNTGG 1 cut(s) 637
PkrI GCNGC 4 cut(s) 439, 488, 521, 769
PleI GAGTC 4 cut(s) 21, 148, 595, 862
PpsI GAGTC 4 cut(s) 21, 148, 595, 862
Psp6I CCWGG 1 cut(s) 1171
PspFI CCCAGC 1 cut(s) 665
PspGI CCWGG 1 cut(s) 1171
PspN4I GGNNCC 7 cut(s) 46, 128, 244, 317, 338, 451, 1233
PspPI GGNCC 4 cut(s) 614, 820, 912, 1169
PstNI CAGNNNCTG 1 cut(s) 815
PsuI RGATCY 1 cut(s) 44
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 885
SaqAI TTAA 4 cut(s) 164, 216, 222, 782
SatI GCNGC 4 cut(s) 438, 487, 520, 768
Sau3AI GATC 2 cut(s) 44, 924
Sau96I GGNCC 4 cut(s) 614, 820, 912, 1169
SchI GAGTC 4 cut(s) 21, 148, 596, 862
ScrFI CCNGG 2 cut(s) 143, 1173
SduI GDGCHC 1 cut(s) 320
SetI ASST 8 cut(s) 15, 67, 372, 613, 619, 814, 899, 957
SfaNI GCATC 5 cut(s) 95, 206, 706, 877, 1033
SinI GGWCC 3 cut(s) 614, 820, 912
SmiMI CAYNNNNRTG 1 cut(s) 885
SmlI CTYRAG 2 cut(s) 8, 110
SmoI CTYRAG 2 cut(s) 8, 110
Sse9I AATT 4 cut(s) 19, 399, 599, 1084
SsiI CCGC 2 cut(s) 552, 1093
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 608
StyD4I CCNGG 2 cut(s) 141, 1171
StyI CCWWGG 3 cut(s) 360, 373, 636
TaaI ACNGT 6 cut(s) 79, 214, 332, 454, 1016, 1182
TaiI ACGT 1 cut(s) 899
TaqI TCGA 1 cut(s) 17
TasI AATT 4 cut(s) 19, 399, 599, 1084
TfiI GAWTC 2 cut(s) 203, 841
Tru1I TTAA 4 cut(s) 164, 216, 222, 782
Tru9I TTAA 4 cut(s) 164, 216, 222, 782
TscAI CASTG 4 cut(s) 481, 760, 769, 1009
TseFI GTSAC 1 cut(s) 892
TseI GCWGC 4 cut(s) 437, 486, 519, 767
Tsp45I GTSAC 1 cut(s) 892
TspDTI ATGAA 1 cut(s) 1212
TspGWI ACGGA 4 cut(s) 37, 329, 462, 1204
TspRI CASTG 4 cut(s) 481, 760, 769, 1009
Van91I CCANNNNNTGG 1 cut(s) 637
VpaK11BI GGWCC 3 cut(s) 614, 820, 912
XapI RAATTY 2 cut(s) 19, 599
XspI CTAG 1 cut(s) 608
ZraI GACGTC 1 cut(s) 897
Zsp2I ATGCAT 1 cut(s) 1041
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.