Rh1CG055300

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000074
Physical Location & Seq
Forward (+)
10805475 .. 10809166
3692 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG055300.1

Sequence Viewer

Length: 1995 bp
ATGTGTGCGATATCATCACCAAGGCAACAGCTGATAGCACACTTTAGTGACTTTACACACGAGCTTGGATGGGATACTGAGGCTCTTTTTCCCCTCCCAAATGAAGATGCTACAAAAATAGAGTTAATATGGAGAACAACGAAGCAGGTCTACGCTACACTGACCATCTGTACCACAGCTCGTTACTATCAGACGAAGAAGTATCTGATGATGAATGCTTATTACGAATTGGGGAAGATAAGGAAGGATGTTAGAAGGAACGAATGTAGCGTATGTGAAGCTGAAAAGTTCTATCATTTATACTCTCGTGTTATTGGATTCAGCACAAGGAGGGACAGGAAGGTTAGAGCATATCGTTCCGAATTTGTCATAAGAAGGGAGTGGGTATGTTCGAAACAGGGCAAAGCAACAATTAAGGTCAAGAAACAGGGAGTGAAAGAAAAGGGGAACAGTCTGATCCAAGCTGAGAAGAAGAAGATGAAGAGGAATCAATGCCCAAGGGGTAAAAGATATAGCCGAGTTGGATGCATGGCCGCATTTGGAATTCGATACTGCAAGGAAAGGAAGAAGTATTTCGTATCAAAGTTCGTAACCAATCACAATCATGATGTTGCTGTTTCGGAAGAGGTTCAGTTCCTTCGTTCTCACCGAGGAGTGAATGACAGCGTCATTTCCCAGGTTGAGGAAGTGCAGGAGAGCATTGGGAAGCTGATTTATGCTTCTTTAACAGTTCAAGAGTGGGAGGCTGCTTGGCACACACTTGTTCAGACACACGGACTTGCAAACAATGCATGGGTAACTTCTTTGTATAACAAGCGGGAACGGTGGGCTGAGGCGTATTTTCGAAATCATTTTTTTGGAGGAATGTGCAGCACACAAAGATGTGAGGGGATGCATGTGAAGCTTAAAAAACAGATTGGGAGATATACTAGGATTTGTGATGTGATGCCTAGGTTGGAGAGGACACTTGGGCGGATTCGTAATCGTGTATTGCAAGACAATTTCTTAGGTAAAACTTGTTCCCCTGTTTTAGAGACACACATGCGTGGTTTGGAGGAAGAGGCTGCCAAAATCTTCACCCATGATATATTTGTGATGATTAAGTCACAAATTCTATTTGAGAGGAGGTTTGTCGTACGCCATAGTTTTTCGTTTCCTCATTCTGACTCTATCATGTTCTACCTGACCCAATATGAGAGGACTGAACGCAGATGGTGTGTAGAATTTAGAGTCAACGAAGGGAATCCACAATGGCTATGCTCCTGCAAGCAGTTTGAATGTGATGGAATCCCTTGTGGTCACATATTTTGTGTGCTGAAGTATGAAATGGTTTCGACATATCCGAAGAGCCTGATAAGGCATAGGTGGAGCAGAGCTGTTGCGGAGTCAACCATGGCACCAAATTTACCGGGCAAGTTTAGTGATAAGGCTGCCCAAGTTGAAAGATATTCTGCTCTGATAGTAGAGGCCACAAAAGTATGTGTAAACTATTCTTTCAGCCGCGAAGGATTCGGTATTGGGATGATGAAATTCCAAAAGCTGAAAAAGGCTTCGATGCAATACAATAGGGGTGAGAAACAGCGAAATACGAATGTGGGAAAGTCTCCCAACGTGGTAAGGGACCCTCCCATTGCAAGAACAAAGGGGAGCCAGAAGCAGAGACCGAGTAATACAAACCAAACCATACCTGGTCCGAAAGGGTGTGGATTATGTGCTCAACCTGGGCACAACCGTCGAACGTGTCCTACTCTTGAGGGAGAAGAACAGAACTGCTCAGGAAATCCAGTAATGAAGCTGATCAAACGGAACAGAACAGAAGCTCAAACGGTGCCGAAGAAGAAATTTAATGAAGCTGATCTGACATGTCAACTGGCTCCTATTTTCCCATTCAATGATTCTCAGGCATATACCAATCCTCTTTGTCCATCTTTGTCGTTTGACTTGAACGAGGTCGCCTGCGCTGACATAGATGCCTCAATGTCAATACGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

664

Amino Acids

76.87

Weight (kDa)

9.61

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 96 - 204 2.8e-12 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 136
AccB1I GGYRCC 2 cut(s) 1396, 1828
AccI GTMKAC 1 cut(s) 150
AccII CGCG 1 cut(s) 1503
AciI CCGC 5 cut(s) 534, 817, 973, 1382, 1501
AclWI GGATC 1 cut(s) 451
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 7 cut(s) 362, 543, 1110, 1223, 1402, 1529, 1841
AcuI CTGAAG 1 cut(s) 1337
AfaI GTAC 2 cut(s) 172, 1137
AfiI CCNNNNNNNGG 1 cut(s) 682
AflIII ACRYGT 2 cut(s) 1739, 1862
AgsI TTSAA 5 cut(s) 734, 1277, 1442, 1891, 1945
AjnI CCWGG 3 cut(s) 675, 1687, 1720
AleI CACNNNNGTG 2 cut(s) 45, 1044
Alw21I GWGCWC 1 cut(s) 1717
Alw26I GTCTC 3 cut(s) 1028, 1608, 1654
AlwI GGATC 1 cut(s) 451
AoxI GGCC 2 cut(s) 531, 1467
ApeKI GCWGC 4 cut(s) 746, 870, 1064, 1430
ApoI RAATTY 7 cut(s) 362, 543, 1110, 1223, 1402, 1529, 1841
Asp700I GAANNNNTTC 2 cut(s) 572, 627
AspA2I CCTAGG 1 cut(s) 950
AspLEI GCGC 1 cut(s) 1961
AspS9I GGNCC 2 cut(s) 1621, 1691
AsuC2I CCSGG 1 cut(s) 1410
AsuHPI GGTGA 4 cut(s) 9, 638, 1069, 1583
AsuII TTCGAA 2 cut(s) 392, 844
AvaII GGWCC 2 cut(s) 1621, 1691
AvrII CCTAGG 1 cut(s) 950
BaeGI GKGCMC 1 cut(s) 1728
BanI GGYRCC 2 cut(s) 1396, 1828
BarI GAAGNNNNNNTAC 2 cut(s) 134, 166
BauI CACGAG 2 cut(s) 59, 306
Bbv12I GWGCWC 1 cut(s) 1717
BbvCI CCTCAGC 1 cut(s) 831
BbvI GCAGC 4 cut(s) 733, 882, 1051, 1417
BccI CCATC 5 cut(s) 63, 173, 1206, 1277, 1933
BcgI CGANNNNNNTGC 4 cut(s) 507, 541, 1715, 1749
BciT130I CCWGG 3 cut(s) 677, 1689, 1722
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 1 cut(s) 1797
BcnI CCSGG 1 cut(s) 1410
BcoDI GTCTC 3 cut(s) 1028, 1608, 1654
BfaI CTAG 2 cut(s) 930, 951
BfuAI ACCTGC 1 cut(s) 136
BfuI GTATCC 1 cut(s) 67
BisI GCNGC 6 cut(s) 534, 747, 871, 1065, 1431, 1501
BlnI CCTAGG 1 cut(s) 950
BlsI GCNGC 6 cut(s) 535, 748, 872, 1066, 1432, 1502
Bme1390I CCNGG 4 cut(s) 677, 1410, 1689, 1722
Bme18I GGWCC 2 cut(s) 1621, 1691
BmgT120I GGNCC 2 cut(s) 1621, 1691
BmiI GGNNCC 6 cut(s) 1398, 1622, 1623, 1649, 1830, 1875
BmrFI CCNGG 4 cut(s) 677, 1410, 1689, 1722
BmsI GCATC 6 cut(s) 97, 515, 882, 936, 1545, 1960
Bpu10I CCTNAGC 2 cut(s) 831, 1774
Bpu14I TTCGAA 2 cut(s) 392, 844
BpuEI CTTGAG 1 cut(s) 1772
BpuMI CCSGG 1 cut(s) 1410
BsaI GGTCTC 1 cut(s) 1654
BsaJI CCNNGG 7 cut(s) 20, 497, 649, 675, 950, 1392, 1721
Bsc4I CCNNNNNNNGG 1 cut(s) 682
Bse1I ACTGG 2 cut(s) 1784, 1875
Bse3DI GCAATG 1 cut(s) 1629
BseBI CCWGG 3 cut(s) 677, 1689, 1722
BseDI CCNNGG 7 cut(s) 20, 497, 649, 675, 950, 1392, 1721
BseGI GGATG 5 cut(s) 74, 253, 530, 897, 1527
BseLI CCNNNNNNNGG 1 cut(s) 682
BseMI GCAATG 1 cut(s) 1629
BseMII CTCAG 5 cut(s) 69, 456, 822, 1788, 1913
BseNI ACTGG 2 cut(s) 1784, 1875
BseRI GAGGAG 2 cut(s) 666, 1138
BseSI GKGCMC 1 cut(s) 1728
BseXI GCAGC 4 cut(s) 733, 882, 1051, 1417
BsgI GTGCAG 2 cut(s) 710, 889
Bsh1236I CGCG 1 cut(s) 1503
BshFI GGCC 2 cut(s) 533, 1469
BshNI GGYRCC 2 cut(s) 1396, 1828
BsiHKAI GWGCWC 1 cut(s) 1717
BsiSI CCGG 1 cut(s) 1409
BsiWI CGTACG 1 cut(s) 1135
BslFI GGGAC 2 cut(s) 347, 1634
BslI CCNNNNNNNGG 1 cut(s) 682
BsmAI GTCTC 3 cut(s) 1028, 1608, 1654
BsmFI GGGAC 2 cut(s) 347, 1634
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 2 cut(s) 533, 1469
Bso31I GGTCTC 1 cut(s) 1654
Bsp119I TTCGAA 2 cut(s) 392, 844
Bsp1286I GDGCHC 2 cut(s) 1717, 1728
Bsp143I GATC 3 cut(s) 456, 1797, 1855
Bsp19I CCATGG 1 cut(s) 1392
BspACI CCGC 5 cut(s) 534, 817, 973, 1382, 1501
BspANI GGCC 2 cut(s) 533, 1469
BspCNI CTCAG 5 cut(s) 70, 457, 823, 1787, 1912
BspFNI CGCG 1 cut(s) 1503
BspHI TCATGA 1 cut(s) 604
BspLI GGNNCC 6 cut(s) 1398, 1622, 1623, 1649, 1830, 1875
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 1 cut(s) 451
BspQI GCTCTTC 1 cut(s) 1340
BspT104I TTCGAA 2 cut(s) 392, 844
BspT107I GGYRCC 2 cut(s) 1396, 1828
BspTNI GGTCTC 1 cut(s) 1654
BsrDI GCAATG 1 cut(s) 1629
BsrI ACTGG 2 cut(s) 1784, 1875
BssECI CCNNGG 7 cut(s) 20, 497, 649, 675, 950, 1392, 1721
BssMI GATC 3 cut(s) 456, 1797, 1855
BssSI CACGAG 2 cut(s) 59, 306
BssT1I CCWWGG 4 cut(s) 20, 497, 950, 1392
Bst2BI CACGAG 2 cut(s) 59, 306
Bst2UI CCWGG 3 cut(s) 677, 1689, 1722
Bst4CI ACNGT 5 cut(s) 452, 730, 825, 1733, 1828
Bst6I CTCTTC 4 cut(s) 476, 618, 1053, 1340
BstAPI GCANNNNNTGC 1 cut(s) 788
BstBI TTCGAA 2 cut(s) 392, 844
BstC8I GCNNGC 2 cut(s) 1268, 1957
BstDEI CTNAG 6 cut(s) 78, 465, 831, 1006, 1774, 1899
BstDSI CCRYGG 1 cut(s) 1392
BstF5I GGATG 5 cut(s) 74, 253, 530, 897, 1527
BstFNI CGCG 1 cut(s) 1503
BstHHI GCGC 1 cut(s) 1961
BstKTI GATC 3 cut(s) 459, 1800, 1858
BstMAI GTCTC 3 cut(s) 1028, 1608, 1654
BstMBI GATC 3 cut(s) 456, 1797, 1855
BstMWI GCNNNNNNNGC 2 cut(s) 788, 901
BstNI CCWGG 3 cut(s) 677, 1689, 1722
BstNSI RCATGY 3 cut(s) 899, 1045, 1866
BstSCI CCNGG 4 cut(s) 675, 1408, 1687, 1720
BstSLI GKGCMC 1 cut(s) 1728
BstUI CGCG 1 cut(s) 1503
BstV1I GCAGC 4 cut(s) 733, 882, 1051, 1417
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 533, 1469
BtgI CCRYGG 1 cut(s) 1392
BtsCI GGATG 5 cut(s) 74, 253, 530, 897, 1527
BtsIMutI CAGTG 1 cut(s) 158
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 2 cut(s) 1268, 1957
CciI TCATGA 1 cut(s) 604
CfoI GCGC 1 cut(s) 1961
Cfr13I GGNCC 2 cut(s) 1621, 1691
CseI GACGC 1 cut(s) 655
CsiI ACCWGGT 1 cut(s) 1687
Csp6I GTAC 2 cut(s) 171, 1136
CviAII CATG 9 cut(s) 529, 605, 792, 896, 1042, 1082, 1174, 1393, 1863
CviQI GTAC 2 cut(s) 171, 1136
DdeI CTNAG 6 cut(s) 78, 465, 831, 1006, 1774, 1899
DpnI GATC 3 cut(s) 458, 1799, 1857
DpnII GATC 3 cut(s) 456, 1797, 1855
EaeI YGGCCR 1 cut(s) 531
Eam1104I CTCTTC 4 cut(s) 476, 618, 1053, 1340
EarI CTCTTC 4 cut(s) 476, 618, 1053, 1340
EciI GGCGGA 1 cut(s) 988
Eco130I CCWWGG 4 cut(s) 20, 497, 950, 1392
Eco31I GGTCTC 1 cut(s) 1654
Eco32I GATATC 1 cut(s) 12
Eco47I GGWCC 2 cut(s) 1621, 1691
Eco57I CTGAAG 1 cut(s) 1337
EcoO109I RGGNCCY 1 cut(s) 1621
EcoRI GAATTC 1 cut(s) 543
EcoRII CCWGG 3 cut(s) 675, 1687, 1720
EcoRV GATATC 1 cut(s) 12
EcoT14I CCWWGG 4 cut(s) 20, 497, 950, 1392
EcoT22I ATGCAT 3 cut(s) 530, 793, 897
ErhI CCWWGG 4 cut(s) 20, 497, 950, 1392
FaeI CATG 9 cut(s) 532, 608, 795, 899, 1045, 1085, 1177, 1396, 1866
FaqI GGGAC 2 cut(s) 347, 1634
FatI CATG 9 cut(s) 528, 604, 791, 895, 1041, 1081, 1173, 1392, 1862
FauI CCCGC 1 cut(s) 810
FbaI TGATCA 1 cut(s) 1797
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 6 cut(s) 534, 747, 871, 1065, 1431, 1501
FokI GGATG 5 cut(s) 81, 260, 537, 904, 1534
Fsp4HI GCNGC 6 cut(s) 534, 747, 871, 1065, 1431, 1501
FspBI CTAG 2 cut(s) 930, 951
GlaI GCGC 1 cut(s) 1960
GluI GCNGC 6 cut(s) 534, 747, 871, 1065, 1431, 1501
HaeIII GGCC 2 cut(s) 533, 1469
HapII CCGG 1 cut(s) 1409
HgaI GACGC 1 cut(s) 655
HhaI GCGC 1 cut(s) 1961
Hin1II CATG 9 cut(s) 532, 608, 795, 899, 1045, 1085, 1177, 1396, 1866
Hin6I GCGC 1 cut(s) 1959
HinP1I GCGC 1 cut(s) 1959
HincII GTYRAC 3 cut(s) 1234, 1389, 1868
HindII GTYRAC 3 cut(s) 1234, 1389, 1868
HindIII AAGCTT 1 cut(s) 902
HpaII CCGG 1 cut(s) 1409
HphI GGTGA 4 cut(s) 9, 638, 1069, 1583
Hpy166II GTNNAC 5 cut(s) 151, 1234, 1389, 1486, 1868
Hpy188III TCNNGA 5 cut(s) 421, 605, 734, 1751, 1776
Hpy8I GTNNAC 5 cut(s) 151, 1234, 1389, 1486, 1868
Hpy99I CGWCG 1 cut(s) 1737
HpyAV CCTTC 7 cut(s) 238, 249, 334, 369, 647, 1232, 1499
HpyCH4III ACNGT 5 cut(s) 452, 730, 825, 1733, 1828
HpyCH4IV ACGT 2 cut(s) 1611, 1739
HpyF10VI GCNNNNNNNGC 2 cut(s) 788, 901
HpyF3I CTNAG 6 cut(s) 78, 465, 831, 1006, 1774, 1899
HpySE526I ACGT 2 cut(s) 1611, 1739
Hsp92II CATG 9 cut(s) 532, 608, 795, 899, 1045, 1085, 1177, 1396, 1866
HspAI GCGC 1 cut(s) 1959
KflI GGGWCCC 1 cut(s) 1621
Ksp22I TGATCA 1 cut(s) 1797
Kzo9I GATC 3 cut(s) 456, 1797, 1855
LguI GCTCTTC 1 cut(s) 1340
LmnI GCTCC 4 cut(s) 1265, 1368, 1647, 1879
Lsp1109I GCAGC 4 cut(s) 733, 882, 1051, 1417
LweI GCATC 6 cut(s) 97, 515, 882, 936, 1545, 1960
MabI ACCWGGT 1 cut(s) 1687
MaeI CTAG 2 cut(s) 930, 951
MaeII ACGT 2 cut(s) 1611, 1739
MaeIII GTNAC 6 cut(s) 47, 182, 589, 796, 1104, 1298
MalI GATC 3 cut(s) 458, 1799, 1857
MboI GATC 3 cut(s) 456, 1797, 1855
MhlI GDGCHC 2 cut(s) 1717, 1728
MlyI GAGTC 3 cut(s) 1160, 1239, 1394
MmeI TCCRAC 2 cut(s) 502, 936
Mph1103I ATGCAT 3 cut(s) 530, 793, 897
MroXI GAANNNNTTC 2 cut(s) 572, 627
MseI TTAA 6 cut(s) 125, 414, 725, 906, 1101, 1845
MslI CAYNNNNRTG 4 cut(s) 45, 603, 880, 1044
MspA1I CMGCKG 1 cut(s) 31
MspI CCGG 1 cut(s) 1409
MspR9I CCNGG 4 cut(s) 677, 1410, 1689, 1722
Mva1269I GAATGC 1 cut(s) 220
MvaI CCWGG 3 cut(s) 677, 1689, 1722
MvnI CGCG 1 cut(s) 1503
MwoI GCNNNNNNNGC 2 cut(s) 788, 901
NciI CCSGG 1 cut(s) 1410
NcoI CCATGG 1 cut(s) 1392
NdeII GATC 3 cut(s) 456, 1797, 1855
NlaIII CATG 9 cut(s) 532, 608, 795, 899, 1045, 1085, 1177, 1396, 1866
NlaIV GGNNCC 6 cut(s) 1398, 1622, 1623, 1649, 1830, 1875
NmeAIII GCCGAG 1 cut(s) 542
NmuCI GTSAC 3 cut(s) 47, 1104, 1298
NsiI ATGCAT 3 cut(s) 530, 793, 897
NspI RCATGY 3 cut(s) 899, 1045, 1866
NspV TTCGAA 2 cut(s) 392, 844
OliI CACNNNNGTG 2 cut(s) 45, 1044
PagI TCATGA 1 cut(s) 604
PciI ACATGT 1 cut(s) 1862
PciSI GCTCTTC 1 cut(s) 1340
PcsI WCGNNNNNNNCGW 3 cut(s) 267, 646, 1340
PctI GAATGC 1 cut(s) 220
PdmI GAANNNNTTC 2 cut(s) 572, 627
PfeI GAWTC 7 cut(s) 318, 487, 976, 1243, 1287, 1509, 1895
Pfl23II CGTACG 1 cut(s) 1135
PflFI GACNNNGTC 1 cut(s) 665
PkrI GCNGC 6 cut(s) 535, 748, 872, 1066, 1432, 1502
PleI GAGTC 3 cut(s) 1160, 1238, 1393
PpsI GAGTC 3 cut(s) 1160, 1238, 1393
PpuMI RGGWCCY 1 cut(s) 1621
PscI ACATGT 1 cut(s) 1862
Psp5II RGGWCCY 1 cut(s) 1621
Psp6I CCWGG 3 cut(s) 675, 1687, 1720
PspGI CCWGG 3 cut(s) 675, 1687, 1720
PspLI CGTACG 1 cut(s) 1135
PspN4I GGNNCC 6 cut(s) 1398, 1622, 1623, 1649, 1830, 1875
PspPI GGNCC 2 cut(s) 1621, 1691
PspPPI RGGWCCY 1 cut(s) 1621
PsrI GAACNNNNNNTAC 4 cut(s) 1003, 1035, 1729, 1761
PsyI GACNNNGTC 1 cut(s) 665
PvuII CAGCTG 1 cut(s) 31
RsaI GTAC 2 cut(s) 172, 1137
RsaNI GTAC 2 cut(s) 171, 1136
RseI CAYNNNNRTG 4 cut(s) 45, 603, 880, 1044
SapI GCTCTTC 1 cut(s) 1340
SaqAI TTAA 6 cut(s) 125, 414, 725, 906, 1101, 1845
SatI GCNGC 6 cut(s) 534, 747, 871, 1065, 1431, 1501
Sau3AI GATC 3 cut(s) 456, 1797, 1855
Sau96I GGNCC 2 cut(s) 1621, 1691
SchI GAGTC 3 cut(s) 1160, 1239, 1394
ScrFI CCNGG 4 cut(s) 677, 1410, 1689, 1722
SduI GDGCHC 2 cut(s) 1717, 1728
SexAI ACCWGGT 1 cut(s) 1687
SfaNI GCATC 6 cut(s) 97, 515, 882, 936, 1545, 1960
SfuI TTCGAA 2 cut(s) 392, 844
SinI GGWCC 2 cut(s) 1621, 1691
SmiMI CAYNNNNRTG 4 cut(s) 45, 603, 880, 1044
SmlI CTYRAG 1 cut(s) 1751
SmoI CTYRAG 1 cut(s) 1751
SsiI CCGC 5 cut(s) 534, 817, 973, 1382, 1501
SspMI CTAG 2 cut(s) 930, 951
StyD4I CCNGG 4 cut(s) 675, 1408, 1687, 1720
StyI CCWWGG 4 cut(s) 20, 497, 950, 1392
TaaI ACNGT 5 cut(s) 452, 730, 825, 1733, 1828
TaiI ACGT 2 cut(s) 1614, 1742
TaqI TCGA 6 cut(s) 392, 547, 844, 1334, 1553, 1735
TaqII GACCGA 1 cut(s) 1678
TauI GCSGC 2 cut(s) 536, 1503
TfiI GAWTC 7 cut(s) 318, 487, 976, 1243, 1287, 1509, 1895
Tru1I TTAA 6 cut(s) 125, 414, 725, 906, 1101, 1845
Tru9I TTAA 6 cut(s) 125, 414, 725, 906, 1101, 1845
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 3 cut(s) 47, 1104, 1298
TseI GCWGC 4 cut(s) 746, 870, 1064, 1430
Tsp45I GTSAC 3 cut(s) 47, 1104, 1298
TspDTI ATGAA 7 cut(s) 117, 227, 494, 1338, 1541, 1805, 1863
TspGWI ACGGA 2 cut(s) 789, 1819
TspRI CASTG 1 cut(s) 165
Tth111I GACNNNGTC 1 cut(s) 665
VpaK11BI GGWCC 2 cut(s) 1621, 1691
XapI RAATTY 7 cut(s) 362, 543, 1110, 1223, 1402, 1529, 1841
XceI RCATGY 3 cut(s) 899, 1045, 1866
XcmI CCANNNNNNNNNTGG 1 cut(s) 1685
XmaJI CCTAGG 1 cut(s) 950
XmiI GTMKAC 1 cut(s) 150
XmnI GAANNNNTTC 2 cut(s) 572, 627
XspI CTAG 2 cut(s) 930, 951
Zsp2I ATGCAT 3 cut(s) 530, 793, 897
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.