Rh1AG168900

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000074
Physical Location & Seq
Forward (+)
32154306 .. 32157035
2730 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG168900.1

Sequence Viewer

Length: 2097 bp
ATGGATGGGAGCGGCATGCGATTCAGTGAACCGAATTACCATGGTTGGTCTGTAGATGAGGATGACTTTTCAGATGAGTACGAAGAGTTATTCTCGGATGAGGAAGCTTCGCAGAGTGCAAATATGGATGAGAATCTGGATTGTCTACACTTCAATGGCAAGAAGTATGAAGATCTTAGATCCTCTGATATGATTGGTGTTGAGTTTAGCAGCGTCAAGGCAGTGGACACATTCTATGCTTACTATTCACTTGCCATGGGCTTCAGTTTCCGAAAGGAAAAGTTGTGTCGAAATGCAGCACAAGTGGTGGTGAGAAGACAGTTAGTGTGTTCAAAGGAGGGTGAGAGAAAAAAAAGGGGCAAGTCTGATCCTAGTTTTGCATCAGAAATCATTTCATGCGCCAAAAATCTTAGTCCACCTCATGGGACAAAACCGGTCTGCAAGAGGAAGACAGTTAACCAGAAACCAATCGTGGAAGATGCTGATACAAGAAGTATGAAACGTTCTGGGAAGCAGTTTGGTGATGGTGAACATGAAAAAAAAAGGCAGCGCCCTCCACAAAGAAATATTACCAGAGGTAATTGTCAAGCCCGTATCACAGCACGCCGATGCAAGGAAAATGGTGTCTTCCGTGTGGTCCAATTCATCACCGAACATAACCACGACCTTGCTACAACAGAGTTTGTTCCCTTCCTCCGATCCCACCGCAAGGTTCGGGACCATGACGTTGCTCAGGTAACAGCACTTAAGAAAGTCTCTGTTGGTACTTGCCGGGCTTATGAGTTGTTGGTCCACCAAGCCGGTGGCCATGAATTTGTTGGTTTCCTCATAAAAGATTTGTATAACAAGATGGACTCTGAAAGGAAGGAACTCATGGTTGATGGTGACGCCCAGTCCACAATCAGTTTCATGAATTTGAAAGCATCTAAAGAGGCGGAGTTTTTCTGTTTGTTCAGTGTTGATGCCGAAGTGTTGCCACGCATGGACAAGACAATTGAACGCATCAGGTTTAATGGGCTTAACGATGACTTCAAATCAATGAACTCGCACCCGGTTATTGGCAGCCACATGCGGTGTATTCAACAGCAGGTTAGTGTAAGGTTTACCCACGACGTATTCCTCCTCATAAAAGATCAAATTCTTTTTGAGTCAAAGTTTCTCGTTGCTGACCGTGTTCGTTATGAGAATCAAGGATCAACACTTCATCTTGTAACCCAATATGGTAAACCTGAAAGGACATGGCATGTGACACATTATCAAGGTAAGCCCGACCTTTCTTTCGTATGCTCATGTCACCTCTTTGAGTCGGATGGTATTCCTTGCTGCCACATCTTCACAGTCATGAAGACAATGAATATGACTACCCTTCCAGAATCTTTGGTTAATCAGAGGTGGACAAAACAGGCTTGTACCAAAGATACCAGCACCCTCAGTAGTGGAATAATGCCCGCCAAGGATTTGCAGCTTGCCCGTTATGGGCAAATGATGGGTGATTGTGCTCAAATCTGTCATTCAGCTTCATTCTCAGATGAGGCATATGAAGAAATCACTAACTGTCTTAGTCGACTAATGGTTAGGTCCAAAACATTCAAGAGATGCAAAGATAGTCAGCCACCAGAAACTGTTGATGGTCTACACCCTAATGTGATTAGGGATCCGAACGTGTGCAAAACCAAGGGCACTCATTCCAGGCATTCCACCAGTGTTGAGGTTGAGAGGGATCAGCCAGGAGGGAGGGGTTGTGGATTTTGCAGCCGGCCAGGTCATAATGTACGCACTTGTGCACTGCTAGCTGCACAAAATGGGGGGGAAAAGGATGAACCTCGTCTCCAAAGAGCACGAAACAGCTCCATTGATGCTAGCTTGCAGTCTACTCCGGGTTCCAATAGATACAAGGGTCCAGCTGGTTTCACAAACATTGGTCAGATTGATGAGGATGATGCTTTCCTCAATCAAACTAGCAGTCAACATATGTTGCATCATGTTGAAGAATCTAGGACGTTTGACTTTTTTACCGGTCACGACACCTTTTTGGCTTCCTTGAGTGCTCCATCTGCAAATCTAAATGGTGGGAACACATTCGTGCAGCCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

698

Amino Acids

78.87

Weight (kDa)

7.77

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 77 - 122 1.1e-06 FAR1 DNA-binding domain
FAR1 PF03101 172 - 224 1.8e-07 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1078
AccB7I CCANNNNNTGG 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 12
AccI GTMKAC 4 cut(s) 145, 1564, 1633, 1871
AciI CCGC 5 cut(s) 12, 706, 935, 1072, 1449
AclI AACGTT 1 cut(s) 502
AclWI GGATC 7 cut(s) 174, 362, 693, 1201, 1649, 1662, 1728
AcoI YGGCCR 2 cut(s) 805, 1757
AcsI RAATTY 3 cut(s) 812, 913, 1137
AcuI CTGAAG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 888
AfaI GTAC 4 cut(s) 80, 766, 1411, 1773
AfiI CCNNNNNNNGG 5 cut(s) 422, 613, 709, 1058, 1476
AflII CTTAAG 1 cut(s) 746
AflIII ACRYGT 1 cut(s) 1662
AgeI ACCGGT 2 cut(s) 433, 2015
AgsI TTSAA 8 cut(s) 154, 333, 919, 998, 1033, 1082, 1591, 1988
AhdI GACNNNNNGTC 1 cut(s) 892
AjnI CCWGG 3 cut(s) 1688, 1726, 1759
AleI CACNNNNGTG 1 cut(s) 2081
AloI GAACNNNNNNTCC 2 cut(s) 1812, 1844
AluBI AGCT 7 cut(s) 107, 1465, 1517, 1793, 1848, 1863, 1904
AluI AGCT 7 cut(s) 107, 1465, 1517, 1793, 1848, 1863, 1904
Alw21I GWGCWC 4 cut(s) 1501, 1786, 1840, 2050
Alw26I GTCTC 2 cut(s) 760, 1832
Alw44I GTGCAC 1 cut(s) 1782
AlwI GGATC 7 cut(s) 174, 362, 693, 1201, 1649, 1662, 1728
AlwNI CAGNNNCTG 1 cut(s) 1622
AoxI GGCC 2 cut(s) 805, 1757
ApaLI GTGCAC 1 cut(s) 1782
ApeKI GCWGC 9 cut(s) 210, 296, 547, 1062, 1323, 1462, 1752, 1793, 2086
ApoI RAATTY 3 cut(s) 812, 913, 1137
ArsI GACNNNNNNTTYG 4 cut(s) 1262, 1294, 1948, 1980
AsiGI ACCGGT 2 cut(s) 433, 2015
Asp700I GAANNNNTTC 1 cut(s) 2078
AspLEI GCGC 2 cut(s) 401, 552
AspS9I GGNCC 5 cut(s) 637, 718, 790, 1578, 1898
AsuC2I CCSGG 3 cut(s) 773, 1052, 1878
AsuHPI GGTGA 8 cut(s) 322, 353, 533, 539, 640, 896, 1286, 1502
AsuNHI GCTAGC 2 cut(s) 1789, 1859
AvaII GGWCC 5 cut(s) 637, 718, 790, 1578, 1898
BaeGI GKGCMC 2 cut(s) 1682, 1786
BaeI ACNNNNGTAYC 2 cut(s) 1882, 1915
BalI TGGCCA 1 cut(s) 807
BamHI GGATCC 1 cut(s) 1654
BbsI GAAGAC 4 cut(s) 322, 455, 619, 1352
Bbv12I GWGCWC 4 cut(s) 1501, 1786, 1840, 2050
BbvI GCAGC 8 cut(s) 222, 308, 559, 1074, 1310, 1474, 1764, 1780
BccI CCATC 7 cut(s) 518, 844, 875, 1304, 1480, 1622, 2059
BciT130I CCWGG 3 cut(s) 1690, 1728, 1761
BcnI CCSGG 3 cut(s) 773, 1052, 1878
BcoDI GTCTC 2 cut(s) 760, 1832
BfaI CTAG 5 cut(s) 372, 1790, 1860, 1959, 1995
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 553
BfrI CTTAAG 1 cut(s) 746
BfuAI ACCTGC 1 cut(s) 1078
BglII AGATCT 1 cut(s) 172
Bme1390I CCNGG 6 cut(s) 773, 1052, 1690, 1728, 1761, 1878
Bme18I GGWCC 5 cut(s) 637, 718, 790, 1578, 1898
BmeRI GACNNNNNGTC 1 cut(s) 892
BmgT120I GGNCC 5 cut(s) 637, 718, 790, 1578, 1898
BmiI GGNNCC 4 cut(s) 719, 1656, 1882, 1899
BmrFI CCNGG 6 cut(s) 773, 1052, 1690, 1728, 1761, 1878
BmrI ACTGGG 1 cut(s) 886
BmtI GCTAGC 2 cut(s) 1793, 1863
BmuI ACTGGG 1 cut(s) 886
BpiI GAAGAC 4 cut(s) 322, 455, 619, 1352
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 2062
BpuMI CCSGG 3 cut(s) 773, 1052, 1878
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 888
BsaJI CCNNGG 4 cut(s) 40, 255, 1452, 1674
BsaWI WCCGGW 2 cut(s) 433, 2015
BsaXI ACNNNNNCTCC 4 cut(s) 1726, 1756, 1812, 1842
Bsc4I CCNNNNNNNGG 5 cut(s) 422, 613, 709, 1058, 1476
Bse118I RCCGGY 4 cut(s) 433, 800, 1755, 2015
Bse1I ACTGG 2 cut(s) 892, 1701
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 3 cut(s) 1690, 1728, 1761
BseDI CCNNGG 4 cut(s) 40, 255, 1452, 1674
BseGI GGATG 7 cut(s) 10, 67, 103, 133, 1315, 1822, 1942
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 5 cut(s) 422, 613, 709, 1058, 1476
BseMII CTCAG 3 cut(s) 746, 1444, 1539
BseNI ACTGG 2 cut(s) 892, 1701
BseRI GAGGAG 1 cut(s) 1112
BseSI GKGCMC 2 cut(s) 1682, 1786
BseXI GCAGC 8 cut(s) 222, 308, 559, 1074, 1310, 1474, 1764, 1780
BsgI GTGCAG 1 cut(s) 1779
BshFI GGCC 2 cut(s) 807, 1759
BshTI ACCGGT 2 cut(s) 433, 2015
BsiHKAI GWGCWC 4 cut(s) 1501, 1786, 1840, 2050
BsiSI CCGG 7 cut(s) 434, 772, 801, 1052, 1756, 1877, 2016
BslFI GGGAC 2 cut(s) 439, 731
BslI CCNNNNNNNGG 5 cut(s) 422, 613, 709, 1058, 1476
BsmAI GTCTC 2 cut(s) 760, 1832
BsmBI CGTCTC 1 cut(s) 1832
BsmFI GGGAC 2 cut(s) 439, 731
BsmI GAATGC 1 cut(s) 1693
BsnI GGCC 2 cut(s) 807, 1759
Bsp1286I GDGCHC 5 cut(s) 1501, 1682, 1786, 1840, 2050
Bsp143I GATC 8 cut(s) 172, 179, 367, 698, 1132, 1193, 1654, 1720
Bsp19I CCATGG 2 cut(s) 40, 255
BspACI CCGC 5 cut(s) 12, 706, 935, 1072, 1449
BspANI GGCC 2 cut(s) 807, 1759
BspCNI CTCAG 3 cut(s) 745, 1443, 1538
BspHI TCATGA 2 cut(s) 909, 1341
BspLI GGNNCC 4 cut(s) 719, 1656, 1882, 1899
BspMI ACCTGC 1 cut(s) 1078
BspOI GCTAGC 2 cut(s) 1793, 1863
BspPI GGATC 7 cut(s) 174, 362, 693, 1201, 1649, 1662, 1728
BspTI CTTAAG 1 cut(s) 746
BsrBI CCGCTC 1 cut(s) 12
BsrFI RCCGGY 4 cut(s) 433, 800, 1755, 2015
BsrI ACTGG 2 cut(s) 892, 1701
BssAI RCCGGY 4 cut(s) 433, 800, 1755, 2015
BssECI CCNNGG 4 cut(s) 40, 255, 1452, 1674
BssMI GATC 8 cut(s) 172, 179, 367, 698, 1132, 1193, 1654, 1720
BssNI GRCGYC 1 cut(s) 888
BssT1I CCWWGG 4 cut(s) 40, 255, 1452, 1674
Bst2UI CCWGG 3 cut(s) 1690, 1728, 1761
Bst4CI ACNGT 6 cut(s) 321, 454, 1172, 1339, 1556, 1624
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 888
BstAFI CTTAAG 1 cut(s) 746
BstC8I GCNNGC 8 cut(s) 17, 604, 1449, 1467, 1757, 1791, 1861, 1865
BstDEI CTNAG 6 cut(s) 176, 410, 732, 1430, 1525, 1559
BstDSI CCRYGG 2 cut(s) 40, 255
BstF5I GGATG 7 cut(s) 10, 67, 103, 133, 1315, 1822, 1942
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 2 cut(s) 401, 552
BstKTI GATC 8 cut(s) 175, 182, 370, 701, 1135, 1196, 1657, 1723
BstMAI GTCTC 2 cut(s) 760, 1832
BstMBI GATC 8 cut(s) 172, 179, 367, 698, 1132, 1193, 1654, 1720
BstMWI GCNNNNNNNGC 2 cut(s) 1790, 2054
BstNI CCWGG 3 cut(s) 1690, 1728, 1761
BstNSI RCATGY 3 cut(s) 19, 1072, 1247
BstSCI CCNGG 6 cut(s) 771, 1050, 1688, 1726, 1759, 1876
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 2 cut(s) 1682, 1786
BstV1I GCAGC 8 cut(s) 222, 308, 559, 1074, 1310, 1474, 1764, 1780
BstV2I GAAGAC 4 cut(s) 322, 455, 619, 1352
BstX2I RGATCY 3 cut(s) 172, 179, 1654
BstXI CCANNNNNNTGG 1 cut(s) 803
BstYI RGATCY 3 cut(s) 172, 179, 1654
BsuRI GGCC 2 cut(s) 807, 1759
BtgI CCRYGG 2 cut(s) 40, 255
BtsCI GGATG 7 cut(s) 10, 67, 103, 133, 1315, 1822, 1942
BtsI GCAGTG 2 cut(s) 228, 1784
BtsIMutI CAGTG 5 cut(s) 31, 228, 961, 1708, 1784
BveI ACCTGC 1 cut(s) 1078
Cac8I GCNNGC 8 cut(s) 17, 604, 1449, 1467, 1757, 1791, 1861, 1865
CaiI CAGNNNCTG 1 cut(s) 1622
CciI TCATGA 2 cut(s) 909, 1341
CfoI GCGC 2 cut(s) 401, 552
Cfr10I RCCGGY 4 cut(s) 433, 800, 1755, 2015
Cfr13I GGNCC 5 cut(s) 637, 718, 790, 1578, 1898
CseI GACGC 2 cut(s) 202, 896
Csp6I GTAC 4 cut(s) 79, 765, 1410, 1772
CspAI ACCGGT 2 cut(s) 433, 2015
CspCI CAANNNNNGTGG 2 cut(s) 1687, 1722
CviQI GTAC 4 cut(s) 79, 765, 1410, 1772
DdeI CTNAG 6 cut(s) 176, 410, 732, 1430, 1525, 1559
DpnI GATC 8 cut(s) 174, 181, 369, 700, 1134, 1195, 1656, 1722
DpnII GATC 8 cut(s) 172, 179, 367, 698, 1132, 1193, 1654, 1720
DriI GACNNNNNGTC 1 cut(s) 892
EaeI YGGCCR 2 cut(s) 805, 1757
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 892
EarI CTCTTC 1 cut(s) 78
EciI GGCGGA 1 cut(s) 950
Eco130I CCWWGG 4 cut(s) 40, 255, 1452, 1674
Eco47I GGWCC 5 cut(s) 637, 718, 790, 1578, 1898
Eco57I CTGAAG 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 1688, 1726, 1759
EcoT14I CCWWGG 4 cut(s) 40, 255, 1452, 1674
ErhI CCWWGG 4 cut(s) 40, 255, 1452, 1674
Esp3I CGTCTC 1 cut(s) 1832
FaqI GGGAC 2 cut(s) 439, 731
FauI CCCGC 1 cut(s) 1456
FauNDI CATATG 2 cut(s) 1537, 1971
FblI GTMKAC 4 cut(s) 145, 1564, 1633, 1871
FokI GGATG 7 cut(s) 17, 74, 110, 140, 1322, 1829, 1949
FspBI CTAG 5 cut(s) 372, 1790, 1860, 1959, 1995
GlaI GCGC 2 cut(s) 400, 551
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 2 cut(s) 807, 1759
HapII CCGG 7 cut(s) 434, 772, 801, 1052, 1756, 1877, 2016
HgaI GACGC 2 cut(s) 202, 896
HhaI GCGC 2 cut(s) 401, 552
Hin1I GRCGYC 1 cut(s) 888
Hin6I GCGC 2 cut(s) 399, 550
HinP1I GCGC 2 cut(s) 399, 550
HincII GTYRAC 3 cut(s) 457, 1565, 1967
HindII GTYRAC 3 cut(s) 457, 1565, 1967
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 8 cut(s) 21, 133, 854, 1148, 1186, 1304, 1373, 1991
HpaI GTTAAC 1 cut(s) 457
HpaII CCGG 7 cut(s) 434, 772, 801, 1052, 1756, 1877, 2016
HphI GGTGA 8 cut(s) 322, 353, 533, 539, 640, 896, 1286, 1502
Hpy188III TCNNGA 7 cut(s) 137, 716, 910, 1342, 1370, 1591, 2021
Hpy99I CGWCG 1 cut(s) 1115
HpyAV CCTTC 3 cut(s) 700, 859, 1376
HpyCH4III ACNGT 6 cut(s) 321, 454, 1172, 1339, 1556, 1624
HpyCH4IV ACGT 5 cut(s) 502, 726, 1113, 1662, 2000
HpyF10VI GCNNNNNNNGC 2 cut(s) 1790, 2054
HpyF3I CTNAG 6 cut(s) 176, 410, 732, 1430, 1525, 1559
HpySE526I ACGT 5 cut(s) 502, 726, 1113, 1662, 2000
Hsp92I GRCGYC 1 cut(s) 888
HspAI GCGC 2 cut(s) 399, 550
KroI GCCGGC 1 cut(s) 1755
KroNI GCCGGC 1 cut(s) 1757
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 8 cut(s) 172, 179, 367, 698, 1132, 1193, 1654, 1720
LmnI GCTCC 3 cut(s) 9, 1853, 2053
Lsp1109I GCAGC 8 cut(s) 222, 308, 559, 1074, 1310, 1474, 1764, 1780
MaeI CTAG 5 cut(s) 372, 1790, 1860, 1959, 1995
MaeII ACGT 5 cut(s) 502, 726, 1113, 1662, 2000
MaeIII GTNAC 6 cut(s) 736, 884, 1210, 1246, 1292, 2018
MalI GATC 8 cut(s) 174, 181, 369, 700, 1134, 1195, 1656, 1722
MbiI CCGCTC 1 cut(s) 12
MboI GATC 8 cut(s) 172, 179, 367, 698, 1132, 1193, 1654, 1720
MfeI CAATTG 1 cut(s) 993
MflI RGATCY 3 cut(s) 172, 179, 1654
MhlI GDGCHC 5 cut(s) 1501, 1682, 1786, 1840, 2050
MlsI TGGCCA 1 cut(s) 807
MluCI AATT 7 cut(s) 34, 580, 641, 812, 913, 993, 1137
MluNI TGGCCA 1 cut(s) 807
MlyI GAGTC 3 cut(s) 848, 1157, 1313
MmeI TCCRAC 1 cut(s) 1287
Mox20I TGGCCA 1 cut(s) 807
MroNI GCCGGC 1 cut(s) 1755
MroXI GAANNNNTTC 1 cut(s) 2078
MscI TGGCCA 1 cut(s) 807
MseI TTAA 5 cut(s) 456, 747, 1011, 1020, 1383
MslI CAYNNNNRTG 5 cut(s) 153, 607, 1340, 1641, 2081
Msp20I TGGCCA 1 cut(s) 807
MspA1I CMGCKG 1 cut(s) 1904
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 7 cut(s) 434, 772, 801, 1052, 1756, 1877, 2016
MspR9I CCNGG 6 cut(s) 773, 1052, 1690, 1728, 1761, 1878
MunI CAATTG 1 cut(s) 993
Mva1269I GAATGC 1 cut(s) 1693
MvaI CCWGG 3 cut(s) 1690, 1728, 1761
MwoI GCNNNNNNNGC 2 cut(s) 1790, 2054
NaeI GCCGGC 1 cut(s) 1757
NciI CCSGG 3 cut(s) 773, 1052, 1878
NcoI CCATGG 2 cut(s) 40, 255
NdeI CATATG 2 cut(s) 1537, 1971
NdeII GATC 8 cut(s) 172, 179, 367, 698, 1132, 1193, 1654, 1720
NgoMIV GCCGGC 1 cut(s) 1755
NheI GCTAGC 2 cut(s) 1789, 1859
NlaIV GGNNCC 4 cut(s) 719, 1656, 1882, 1899
NmuCI GTSAC 4 cut(s) 884, 1246, 1292, 2018
NspI RCATGY 3 cut(s) 19, 1072, 1247
OliI CACNNNNGTG 1 cut(s) 2081
PaeI GCATGC 1 cut(s) 19
PagI TCATGA 2 cut(s) 909, 1341
PctI GAATGC 1 cut(s) 1693
PdiI GCCGGC 1 cut(s) 1757
PdmI GAANNNNTTC 1 cut(s) 2078
PfeI GAWTC 5 cut(s) 21, 133, 1186, 1373, 1991
PflMI CCANNNNNTGG 1 cut(s) 422
PinAI ACCGGT 2 cut(s) 433, 2015
PleI GAGTC 3 cut(s) 848, 1156, 1312
PpsI GAGTC 3 cut(s) 848, 1156, 1312
Psp1406I AACGTT 1 cut(s) 502
Psp6I CCWGG 3 cut(s) 1688, 1726, 1759
PspGI CCWGG 3 cut(s) 1688, 1726, 1759
PspN4I GGNNCC 4 cut(s) 719, 1656, 1882, 1899
PspPI GGNCC 5 cut(s) 637, 718, 790, 1578, 1898
PsrI GAACNNNNNNTAC 2 cut(s) 487, 519
PstNI CAGNNNCTG 1 cut(s) 1622
PsuI RGATCY 3 cut(s) 172, 179, 1654
PvuII CAGCTG 1 cut(s) 1904
RsaI GTAC 4 cut(s) 80, 766, 1411, 1773
RsaNI GTAC 4 cut(s) 79, 765, 1410, 1772
RseI CAYNNNNRTG 5 cut(s) 153, 607, 1340, 1641, 2081
SalI GTCGAC 1 cut(s) 1563
SaqAI TTAA 5 cut(s) 456, 747, 1011, 1020, 1383
Sau3AI GATC 8 cut(s) 172, 179, 367, 698, 1132, 1193, 1654, 1720
Sau96I GGNCC 5 cut(s) 637, 718, 790, 1578, 1898
SchI GAGTC 3 cut(s) 848, 1157, 1313
ScrFI CCNGG 6 cut(s) 773, 1052, 1690, 1728, 1761, 1878
SduI GDGCHC 5 cut(s) 1501, 1682, 1786, 1840, 2050
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 5 cut(s) 637, 718, 790, 1578, 1898
SmiMI CAYNNNNRTG 5 cut(s) 153, 607, 1340, 1641, 2081
SmlI CTYRAG 2 cut(s) 746, 2041
SmoI CTYRAG 2 cut(s) 746, 2041
SphI GCATGC 1 cut(s) 19
Sse9I AATT 7 cut(s) 34, 580, 641, 812, 913, 993, 1137
SsiI CCGC 5 cut(s) 12, 706, 935, 1072, 1449
SspI AATATT 1 cut(s) 568
SspMI CTAG 5 cut(s) 372, 1790, 1860, 1959, 1995
StyD4I CCNGG 6 cut(s) 771, 1050, 1688, 1726, 1759, 1876
StyI CCWWGG 4 cut(s) 40, 255, 1452, 1674
TaaI ACNGT 6 cut(s) 321, 454, 1172, 1339, 1556, 1624
TaiI ACGT 5 cut(s) 505, 729, 1116, 1665, 2003
TaqI TCGA 2 cut(s) 289, 1564
TasI AATT 7 cut(s) 34, 580, 641, 812, 913, 993, 1137
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 5 cut(s) 21, 133, 1186, 1373, 1991
Tru1I TTAA 5 cut(s) 456, 747, 1011, 1020, 1383
Tru9I TTAA 5 cut(s) 456, 747, 1011, 1020, 1383
TscAI CASTG 5 cut(s) 31, 228, 961, 1708, 1791
TseFI GTSAC 4 cut(s) 884, 1246, 1292, 2018
TseI GCWGC 9 cut(s) 210, 296, 547, 1062, 1323, 1462, 1752, 1793, 2086
Tsp45I GTSAC 4 cut(s) 884, 1246, 1292, 2018
TspGWI ACGGA 1 cut(s) 620
TspRI CASTG 5 cut(s) 31, 228, 961, 1708, 1791
Van91I CCANNNNNTGG 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 746
VneI GTGCAC 1 cut(s) 1782
VpaK11BI GGWCC 5 cut(s) 637, 718, 790, 1578, 1898
XapI RAATTY 3 cut(s) 812, 913, 1137
XceI RCATGY 3 cut(s) 19, 1072, 1247
XcmI CCANNNNNNNNNTGG 2 cut(s) 800, 815
XmiI GTMKAC 4 cut(s) 145, 1564, 1633, 1871
XmnI GAANNNNTTC 1 cut(s) 2078
XspI CTAG 5 cut(s) 372, 1790, 1860, 1959, 1995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.