Rh3BG264600

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000074
Physical Location & Seq
Forward (+)
25618046 .. 25626278
8233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG264600.1

Sequence Viewer

Length: 2529 bp
ATGGACAGCGACACGGACCATCATGGTTTGCGCTTTAGTGAGGAACAATACCATCAATCCGGCCAGATTTCTAATGACGAGGATGGTTTATCGAGTGATGAACCAAAAGGGGAGACATTCAGCTTTGGGTTGGATGAAACCACAGATTGTCTACTTTACAAGGGAAAGAAGTACCAAGACCTACAATTTTCAGATTTCAACGGAATTTTGTTTCGTTCAGTTGATGACGTTGAGAGATTTTATGCATACCACTCAATTGCAAAGGGGTTTTCTGTAAGGAAAAGCAAATCTGACAAGGACCGTGATGGTGACATTTTCAGAAGATCACTATGTTGTTCTAAGCAGGGTTGGCGTACGGTTAACACTCCAAAGAAGCGTACAAAAGTGTATGGGAGTGCCCCCTCTGATTTCACCAATCAAGAACAACCTGCAATTAAGAGGAAGGTGACTAGATGCGGTTGTCCAGCCCGCCTAACTGTCATTCGTTGCAAGACAACCGGTTGTTTCTACGTGTCGCAGTTTGAGACCAACCACAACCATGTTCTTGTTCCAAAGGAAATGGTTCATTTGCTAAGATCAAACAGGATGGTTGGAGAACATGCGTCTGCACAAGTAAGCTCTTTGAAAAAAGTTTCCGTTGCGACGTGCCGCGCTTATGAGTTATTGGTTCACCAAGCAGGGGGATATCCCCTCGTTGGCTTCAGAATAAAAGATTTGTACAACCAACAAGATTCCGAAAGGAGAGAACTATTGGTTGACGGGGACGCTCAAGCTGCCATTAGCTTCATGAATCTGAAAGCGTCCCATGATCCCCATTTTTATTGTTATTTTTGTGTTGATCTAGAAGGGCGGCTGGCAAATCTTTTCTGGAGAGACTCTAAGTGTCTTGTTGACTACAACAACTTTGGCGATGTTTTGATTATGGATAGCACTTACAAGACAAATCTATATGGAAAGCCATTAGTCGTTTTTGTGGGAGTTAACAATCATCGAGCTACGGTTCTATTTGGTTGCGCTTTGTTGGTGGACGAGACCGAAGAGACTTTCAAATGGGTGGTATCAGCCTTCATTTCATCTATGGACGGGAAGAAACCGATTTCTGTCATTACTGACCAGGATGACGCTATGCGAAATGCCATTGTCGAGCTTATACCGGAGGCTAGATATCGACTTTGTGCATGGCACATTTCCAAGAATGTTATTGGTAAAATTCATGATGTCAATGTTCAAAGAGACTTCTCCCATTTGATATACGCTGGGCTGTCAGTTTCTGAGTGGGAATCTTATTGGAACTACGTGGTTGCCATGGCTGGTCTACAGGACAACCCTTGGGTTATCGGCATGTTCAACAAGCGAGAGCGATGGGCTGAGGCTTTCTTCAGGGAAGATTTCTTTGCTGGTGTTCGTTCCACACAGAGATGTGAACAAATGCATCGTGACCTAAAGACTGGAATGGGTAAACAGATGAGGCTTTATGAGGTGTTGCCTCGGTTGGATAAGACAATGGATCGAATACGGGAAAGGGTGTTATATGATGATTTTGTTTCTATCAACGCAAGTCCGGTTATTGGCGACCACATGCGTTTATTGCAAGAGCAAATTGGGAAAAAATTTACACATGACATTTTCCTTTTGATACAGGATCAAATTAGGTTTGAATCCCGATTCTTCGTGCAGGATGAATTTCAATTTCCGGAATTGGGATCCTCAGTAGTCACTCTTACACAGTACGGTAAAGCGCATAGGAAGTGGAATGTTACATATCGGAACAACAATGACAACCCCACACTGAGTTGCACGTGCAAGTTGTTTGAGTCTGATGGAATCCCTTGCTGTCATATATTTGCTGTGATGAAAGTTAAGCATATAACAGCGTTTCCCGATTCTTTGGTGACAGTGAGGTGGACTAAAGATGCGACGACTACAACTGTCAAAACCCGATATAGCAACGGTGAGATACCGGACGATTCTCTTCGCCTAGCAAGGTACGGTGAGATGATGGCAGAATGTACACAGACTTGTTTCAGGGCGTCATTTTCCGAAGCCGCTTACTATGAAACTATTGAATCCATGCGGCGTATGTCTATTAGGGCGAGGACATATCCAGTTCATGAACAACAAGATGATACAACACATAACAGTCTTCACGGACTTCACAAGAATGTTGTAAAGGATCCTACAATTTGCAAATCAAAAGGTACTCGAGCAAATCCCCCCACTGTTGTCGATGATGGCAAAGTAGGTATTACCAAAGGCGGTATTAAATGTGGGAAATGTCACCAGCCGGGCCACAATGTGCGAACGTGCGAGAAGGCCAGTAATGATGCCAAAGGCTGGGGCAAATCACATCGTGACAATGTTGTTTTAGATTCATCCGCTGACCACACCAGTCCCGAAGAGGAGGAATATGAGACTACTTGTAGCAGCGATAATACTAATTCTTTGCTGCACCACAATGAAGAAGCCCGGAATTTTCCCTTTTTTGGGGGGTATGACAACATAATACCCTCTCTGTCCACCAGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

842

Amino Acids

96.2

Weight (kDa)

7.01

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 79 - 184 1e-15 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 277 - 388 9.3e-09 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 305 - 399 3.8e-27 MULE transposase domain
SWIM PF04434 586 - 618 9.6e-07 SWIM zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 436
AccB7I CCANNNNNTGG 1 cut(s) 2334
AccI GTMKAC 2 cut(s) 151, 1315
AccII CGCG 1 cut(s) 651
AccIII TCCGGA 1 cut(s) 1693
AciI CCGC 8 cut(s) 456, 469, 649, 850, 2046, 2074, 2256, 2376
AclWI GGATC 7 cut(s) 803, 1515, 1650, 1698, 1711, 2168, 2181
AcoI YGGCCR 1 cut(s) 61
AcsI RAATTY 5 cut(s) 204, 1209, 1610, 1682, 2470
AcuI CTGAAG 2 cut(s) 685, 1363
AcvI CACGTG 1 cut(s) 1800
AcyI GRCGYC 1 cut(s) 2030
AdeI CACNNNGTG 2 cut(s) 2296, 2351
AfaI GTAC 8 cut(s) 173, 355, 379, 719, 1730, 1988, 2011, 2200
AfiI CCNNNNNNNGG 7 cut(s) 679, 695, 1568, 1700, 2334, 2483, 2484
AflIII ACRYGT 1 cut(s) 510
AgeI ACCGGT 1 cut(s) 497
AgsI TTSAA 8 cut(s) 199, 625, 1048, 1229, 1348, 1658, 1688, 2066
AjiI CACGTC 1 cut(s) 645
AjnI CCWGG 1 cut(s) 1113
AluBI AGCT 6 cut(s) 123, 618, 773, 783, 995, 1147
AluI AGCT 6 cut(s) 123, 618, 773, 783, 995, 1147
Alw26I GTCTC 7 cut(s) 107, 518, 867, 1025, 1034, 1227, 2405
AlwI GGATC 7 cut(s) 803, 1515, 1650, 1698, 1711, 2168, 2181
AlwNI CAGNNNCTG 1 cut(s) 1271
Ama87I CYCGRG 1 cut(s) 2202
Aor13HI TCCGGA 1 cut(s) 1693
AoxI GGCC 3 cut(s) 61, 2287, 2313
ApeKI GCWGC 3 cut(s) 773, 2424, 2446
ApoI RAATTY 5 cut(s) 204, 1209, 1610, 1682, 2470
AsiGI ACCGGT 1 cut(s) 497
Asp700I GAANNNNTTC 1 cut(s) 561
AspLEI GCGC 4 cut(s) 33, 653, 1016, 1741
AspS9I GGNCC 3 cut(s) 16, 298, 2287
AsuC2I CCSGG 2 cut(s) 2286, 2467
AsuHPI GGTGA 8 cut(s) 320, 403, 457, 662, 1903, 1964, 2003, 2270
AvaI CYCGRG 1 cut(s) 2202
AvaII GGWCC 2 cut(s) 16, 298
BaeGI GKGCMC 1 cut(s) 400
BamHI GGATCC 2 cut(s) 1703, 2173
BbrPI CACGTG 1 cut(s) 1800
BbsI GAAGAC 1 cut(s) 2135
BbvCI CCTCAGC 1 cut(s) 1368
BbvI GCAGC 3 cut(s) 760, 2433, 2436
BccI CCATC 9 cut(s) 27, 60, 77, 299, 580, 1356, 1814, 1993, 2225
BciT130I CCWGG 1 cut(s) 1115
BcnI CCSGG 2 cut(s) 2286, 2467
BcoDI GTCTC 7 cut(s) 107, 518, 867, 1025, 1034, 1227, 2405
BfaI CTAG 4 cut(s) 450, 842, 1161, 1979
BfmI CTRYAG 1 cut(s) 1316
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 7 cut(s) 649, 774, 851, 2046, 2075, 2425, 2447
BlsI GCNGC 7 cut(s) 650, 775, 852, 2047, 2076, 2426, 2448
Bme1390I CCNGG 3 cut(s) 1115, 2286, 2467
Bme18I GGWCC 2 cut(s) 16, 298
BmeT110I CYCGRG 1 cut(s) 2202
BmgBI CACGTC 1 cut(s) 645
BmgT120I GGNCC 3 cut(s) 16, 298, 2287
BmiI GGNNCC 2 cut(s) 1705, 2175
BmrFI CCNGG 3 cut(s) 1115, 2286, 2467
BmsI GCATC 4 cut(s) 443, 1441, 1903, 2314
BpiI GAAGAC 1 cut(s) 2135
BpmI CTGGAG 1 cut(s) 889
Bpu10I CCTNAGC 1 cut(s) 1368
BpuEI CTTGAG 1 cut(s) 753
BpuMI CCSGG 2 cut(s) 2286, 2467
BsaAI YACGTR 3 cut(s) 511, 1297, 1800
BsaHI GRCGYC 1 cut(s) 2030
BsaI GGTCTC 2 cut(s) 518, 1025
BsaJI CCNNGG 3 cut(s) 1305, 1328, 1487
BsaWI WCCGGW 5 cut(s) 497, 1153, 1561, 1693, 1960
Bsc4I CCNNNNNNNGG 7 cut(s) 679, 695, 1568, 1700, 2334, 2483, 2484
Bse118I RCCGGY 1 cut(s) 497
Bse1I ACTGG 4 cut(s) 1453, 2105, 2316, 2388
BseAI TCCGGA 1 cut(s) 1693
BseBI CCWGG 1 cut(s) 1115
BseDI CCNNGG 3 cut(s) 1305, 1328, 1487
BseGI GGATG 6 cut(s) 88, 139, 591, 1123, 1684, 2372
BseLI CCNNNNNNNGG 7 cut(s) 679, 695, 1568, 1700, 2334, 2483, 2484
BseMII CTCAG 4 cut(s) 1263, 1359, 1722, 1781
BseNI ACTGG 4 cut(s) 1453, 2105, 2316, 2388
BseRI GAGGAG 1 cut(s) 2414
BseSI GKGCMC 1 cut(s) 400
BseXI GCAGC 3 cut(s) 760, 2433, 2436
BseYI CCCAGC 2 cut(s) 1256, 2334
BsgI GTGCAG 3 cut(s) 591, 1694, 2432
Bsh1236I CGCG 1 cut(s) 651
BshFI GGCC 3 cut(s) 63, 2289, 2315
BshTI ACCGGT 1 cut(s) 497
BsiHKCI CYCGRG 1 cut(s) 2202
BsiSI CCGG 8 cut(s) 60, 498, 1154, 1562, 1694, 1961, 2285, 2467
BsiWI CGTACG 1 cut(s) 353
BslFI GGGAC 3 cut(s) 776, 787, 2376
BslI CCNNNNNNNGG 7 cut(s) 679, 695, 1568, 1700, 2334, 2483, 2484
BsmAI GTCTC 7 cut(s) 107, 518, 867, 1025, 1034, 1227, 2405
BsmFI GGGAC 3 cut(s) 776, 787, 2376
BsnI GGCC 3 cut(s) 63, 2289, 2315
Bso31I GGTCTC 2 cut(s) 518, 1025
BsoBI CYCGRG 1 cut(s) 2202
Bsp1286I GDGCHC 1 cut(s) 400
Bsp13I TCCGGA 1 cut(s) 1693
Bsp1407I TGTACA 2 cut(s) 717, 2009
Bsp143I GATC 8 cut(s) 323, 575, 808, 838, 1507, 1642, 1703, 2173
Bsp19I CCATGG 1 cut(s) 1305
BspACI CCGC 8 cut(s) 456, 469, 649, 850, 2046, 2074, 2256, 2376
BspANI GGCC 3 cut(s) 63, 2289, 2315
BspCNI CTCAG 4 cut(s) 1264, 1360, 1721, 1782
BspEI TCCGGA 1 cut(s) 1693
BspFNI CGCG 1 cut(s) 651
BspHI TCATGA 3 cut(s) 786, 1213, 2110
BspLI GGNNCC 2 cut(s) 1705, 2175
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 7 cut(s) 803, 1515, 1650, 1698, 1711, 2168, 2181
BspTNI GGTCTC 2 cut(s) 518, 1025
BsrFI RCCGGY 1 cut(s) 497
BsrGI TGTACA 2 cut(s) 717, 2009
BsrI ACTGG 4 cut(s) 1453, 2105, 2316, 2388
BssAI RCCGGY 1 cut(s) 497
BssECI CCNNGG 3 cut(s) 1305, 1328, 1487
BssMI GATC 8 cut(s) 323, 575, 808, 838, 1507, 1642, 1703, 2173
BssNI GRCGYC 1 cut(s) 2030
BssT1I CCWWGG 2 cut(s) 1305, 1328
Bst2UI CCWGG 1 cut(s) 1115
Bst6I CTCTTC 3 cut(s) 1032, 1977, 2391
BstACI GRCGYC 1 cut(s) 2030
BstAUI TGTACA 2 cut(s) 717, 2009
BstBAI YACGTR 3 cut(s) 511, 1297, 1800
BstC8I GCNNGC 2 cut(s) 469, 855
BstDEI CTNAG 7 cut(s) 339, 572, 879, 1272, 1368, 1708, 1790
BstDSI CCRYGG 1 cut(s) 1305
BstF5I GGATG 6 cut(s) 88, 139, 591, 1123, 1684, 2372
BstFNI CGCG 1 cut(s) 651
BstHHI GCGC 4 cut(s) 33, 653, 1016, 1741
BstKTI GATC 8 cut(s) 326, 578, 811, 841, 1510, 1645, 1706, 2176
BstMAI GTCTC 7 cut(s) 107, 518, 867, 1025, 1034, 1227, 2405
BstMBI GATC 8 cut(s) 323, 575, 808, 838, 1507, 1642, 1703, 2173
BstMWI GCNNNNNNNGC 3 cut(s) 349, 773, 1588
BstNI CCWGG 1 cut(s) 1115
BstNSI RCATGY 3 cut(s) 602, 1345, 1582
BstSCI CCNGG 3 cut(s) 1113, 2284, 2465
BstSFI CTRYAG 1 cut(s) 1316
BstSLI GKGCMC 1 cut(s) 400
BstUI CGCG 1 cut(s) 651
BstV1I GCAGC 3 cut(s) 760, 2433, 2436
BstV2I GAAGAC 1 cut(s) 2135
BstX2I RGATCY 2 cut(s) 1703, 2173
BstYI RGATCY 2 cut(s) 1703, 2173
BsuRI GGCC 3 cut(s) 63, 2289, 2315
BtgI CCRYGG 1 cut(s) 1305
BtgZI GCGATG 2 cut(s) 924, 1375
BtrI CACGTC 1 cut(s) 645
BtsCI GGATG 6 cut(s) 88, 139, 591, 1123, 1684, 2372
BtsIMutI CAGTG 3 cut(s) 1787, 1902, 2217
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 2 cut(s) 469, 855
CaiI CAGNNNCTG 1 cut(s) 1271
CciI TCATGA 3 cut(s) 786, 1213, 2110
CfoI GCGC 4 cut(s) 33, 653, 1016, 1741
Cfr10I RCCGGY 1 cut(s) 497
Cfr13I GGNCC 3 cut(s) 16, 298, 2287
CseI GACGC 5 cut(s) 591, 773, 789, 1130, 2019
Csp6I GTAC 8 cut(s) 172, 354, 378, 718, 1729, 1987, 2010, 2199
CspAI ACCGGT 1 cut(s) 497
CviQI GTAC 8 cut(s) 172, 354, 378, 718, 1729, 1987, 2010, 2199
DdeI CTNAG 7 cut(s) 339, 572, 879, 1272, 1368, 1708, 1790
DpnI GATC 8 cut(s) 325, 577, 810, 840, 1509, 1644, 1705, 2175
DpnII GATC 8 cut(s) 323, 575, 808, 838, 1507, 1642, 1703, 2173
DraIII CACNNNGTG 2 cut(s) 2296, 2351
EaeI YGGCCR 1 cut(s) 61
Eam1104I CTCTTC 3 cut(s) 1032, 1977, 2391
EarI CTCTTC 3 cut(s) 1032, 1977, 2391
Eco130I CCWWGG 2 cut(s) 1305, 1328
Eco31I GGTCTC 2 cut(s) 518, 1025
Eco32I GATATC 2 cut(s) 686, 1166
Eco47I GGWCC 2 cut(s) 16, 298
Eco57I CTGAAG 2 cut(s) 685, 1363
Eco72I CACGTG 1 cut(s) 1800
Eco88I CYCGRG 1 cut(s) 2202
EcoRII CCWGG 1 cut(s) 1113
EcoRV GATATC 2 cut(s) 686, 1166
EcoT14I CCWWGG 2 cut(s) 1305, 1328
EcoT22I ATGCAT 2 cut(s) 247, 1434
ErhI CCWWGG 2 cut(s) 1305, 1328
FaqI GGGAC 3 cut(s) 776, 787, 2376
FauI CCCGC 1 cut(s) 476
FblI GTMKAC 2 cut(s) 151, 1315
Fnu4HI GCNGC 7 cut(s) 649, 774, 851, 2046, 2075, 2425, 2447
FokI GGATG 6 cut(s) 95, 146, 598, 1130, 1691, 2359
Fsp4HI GCNGC 7 cut(s) 649, 774, 851, 2046, 2075, 2425, 2447
FspBI CTAG 4 cut(s) 450, 842, 1161, 1979
GlaI GCGC 4 cut(s) 32, 652, 1015, 1740
GluI GCNGC 7 cut(s) 649, 774, 851, 2046, 2075, 2425, 2447
GsaI CCCAGC 2 cut(s) 1260, 2338
GsuI CTGGAG 1 cut(s) 889
HaeIII GGCC 3 cut(s) 63, 2289, 2315
HapII CCGG 8 cut(s) 60, 498, 1154, 1562, 1694, 1961, 2285, 2467
HgaI GACGC 5 cut(s) 591, 773, 789, 1130, 2019
HhaI GCGC 4 cut(s) 33, 653, 1016, 1741
Hin1I GRCGYC 1 cut(s) 2030
Hin6I GCGC 4 cut(s) 31, 651, 1014, 1739
HinP1I GCGC 4 cut(s) 31, 651, 1014, 1739
HincII GTYRAC 4 cut(s) 361, 757, 892, 982
HindII GTYRAC 4 cut(s) 361, 757, 892, 982
HpaI GTTAAC 2 cut(s) 361, 982
HpaII CCGG 8 cut(s) 60, 498, 1154, 1562, 1694, 1961, 2285, 2467
HphI GGTGA 8 cut(s) 320, 403, 457, 662, 1903, 1964, 2003, 2270
Hpy99I CGWCG 2 cut(s) 646, 1921
HpyAV CCTTC 4 cut(s) 436, 839, 1075, 2305
HpyCH4IV ACGT 6 cut(s) 228, 510, 644, 1296, 1799, 2303
HpyF10VI GCNNNNNNNGC 3 cut(s) 349, 773, 1588
HpyF3I CTNAG 7 cut(s) 339, 572, 879, 1272, 1368, 1708, 1790
HpySE526I ACGT 6 cut(s) 228, 510, 644, 1296, 1799, 2303
Hsp92I GRCGYC 1 cut(s) 2030
HspAI GCGC 4 cut(s) 31, 651, 1014, 1739
Kpn2I TCCGGA 1 cut(s) 1693
KspAI GTTAAC 2 cut(s) 361, 982
Kzo9I GATC 8 cut(s) 323, 575, 808, 838, 1507, 1642, 1703, 2173
Lsp1109I GCAGC 3 cut(s) 760, 2433, 2436
LweI GCATC 4 cut(s) 443, 1441, 1903, 2314
MaeI CTAG 4 cut(s) 450, 842, 1161, 1979
MaeII ACGT 6 cut(s) 228, 510, 644, 1296, 1799, 2303
MaeIII GTNAC 8 cut(s) 308, 445, 1436, 1714, 1756, 1891, 2276, 2351
MalI GATC 8 cut(s) 325, 577, 810, 840, 1509, 1644, 1705, 2175
MboI GATC 8 cut(s) 323, 575, 808, 838, 1507, 1642, 1703, 2173
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 2 cut(s) 1703, 2173
MhlI GDGCHC 1 cut(s) 400
MlyI GAGTC 2 cut(s) 869, 1823
MmeI TCCRAC 3 cut(s) 111, 571, 1473
Mph1103I ATGCAT 2 cut(s) 247, 1434
MroI TCCGGA 1 cut(s) 1693
MroXI GAANNNNTTC 1 cut(s) 561
MseI TTAA 5 cut(s) 360, 435, 981, 1860, 2262
MslI CAYNNNNRTG 4 cut(s) 537, 1417, 2160, 2454
MspA1I CMGCKG 1 cut(s) 2378
MspI CCGG 8 cut(s) 60, 498, 1154, 1562, 1694, 1961, 2285, 2467
MspR9I CCNGG 3 cut(s) 1115, 2286, 2467
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 1115
MvnI CGCG 1 cut(s) 651
MwoI GCNNNNNNNGC 3 cut(s) 349, 773, 1588
NciI CCSGG 2 cut(s) 2286, 2467
NcoI CCATGG 1 cut(s) 1305
NdeII GATC 8 cut(s) 323, 575, 808, 838, 1507, 1642, 1703, 2173
NlaIV GGNNCC 2 cut(s) 1705, 2175
NmuCI GTSAC 7 cut(s) 308, 445, 1436, 1714, 1891, 2276, 2351
NsiI ATGCAT 2 cut(s) 247, 1434
NspI RCATGY 3 cut(s) 602, 1345, 1582
PaeR7I CTCGAG 1 cut(s) 2202
PagI TCATGA 3 cut(s) 786, 1213, 2110
PdmI GAANNNNTTC 1 cut(s) 561
Pfl23II CGTACG 1 cut(s) 353
PflMI CCANNNNNTGG 1 cut(s) 2334
PinAI ACCGGT 1 cut(s) 497
PkrI GCNGC 7 cut(s) 650, 775, 852, 2047, 2076, 2426, 2448
PleI GAGTC 2 cut(s) 869, 1822
PmaCI CACGTG 1 cut(s) 1800
PmlI CACGTG 1 cut(s) 1800
PpsI GAGTC 2 cut(s) 869, 1822
Ppu21I YACGTR 3 cut(s) 511, 1297, 1800
Psp6I CCWGG 1 cut(s) 1113
PspCI CACGTG 1 cut(s) 1800
PspFI CCCAGC 2 cut(s) 1256, 2334
PspGI CCWGG 1 cut(s) 1113
PspLI CGTACG 1 cut(s) 353
PspN4I GGNNCC 2 cut(s) 1705, 2175
PspPI GGNCC 3 cut(s) 16, 298, 2287
PspXI VCTCGAGB 1 cut(s) 2202
PstNI CAGNNNCTG 1 cut(s) 1271
PsuI RGATCY 2 cut(s) 1703, 2173
RsaI GTAC 8 cut(s) 173, 355, 379, 719, 1730, 1988, 2011, 2200
RsaNI GTAC 8 cut(s) 172, 354, 378, 718, 1729, 1987, 2010, 2199
RseI CAYNNNNRTG 4 cut(s) 537, 1417, 2160, 2454
SaqAI TTAA 5 cut(s) 360, 435, 981, 1860, 2262
SatI GCNGC 7 cut(s) 649, 774, 851, 2046, 2075, 2425, 2447
Sau3AI GATC 8 cut(s) 323, 575, 808, 838, 1507, 1642, 1703, 2173
Sau96I GGNCC 3 cut(s) 16, 298, 2287
SchI GAGTC 2 cut(s) 869, 1823
ScrFI CCNGG 3 cut(s) 1115, 2286, 2467
SduI GDGCHC 1 cut(s) 400
SfaNI GCATC 4 cut(s) 443, 1441, 1903, 2314
SfcI CTRYAG 1 cut(s) 1316
Sfr274I CTCGAG 1 cut(s) 2202
SinI GGWCC 2 cut(s) 16, 298
SlaI CTCGAG 1 cut(s) 2202
SmiMI CAYNNNNRTG 4 cut(s) 537, 1417, 2160, 2454
SmlI CTYRAG 2 cut(s) 768, 2202
SmoI CTYRAG 2 cut(s) 768, 2202
SsiI CCGC 8 cut(s) 456, 469, 649, 850, 2046, 2074, 2256, 2376
SspMI CTAG 4 cut(s) 450, 842, 1161, 1979
StyD4I CCNGG 3 cut(s) 1113, 2284, 2465
StyI CCWWGG 2 cut(s) 1305, 1328
TaiI ACGT 6 cut(s) 231, 513, 647, 1299, 1802, 2306
TaqI TCGA 7 cut(s) 92, 991, 1143, 1168, 1510, 2203, 2226
TaqII GACCGA 1 cut(s) 1049
TatI WGTACW 2 cut(s) 717, 2009
TauI GCSGC 4 cut(s) 651, 853, 2048, 2077
Tru1I TTAA 5 cut(s) 360, 435, 981, 1860, 2262
Tru9I TTAA 5 cut(s) 360, 435, 981, 1860, 2262
TscAI CASTG 3 cut(s) 1794, 1902, 2224
TseFI GTSAC 7 cut(s) 308, 445, 1436, 1714, 1891, 2276, 2351
TseI GCWGC 3 cut(s) 773, 2424, 2446
Tsp45I GTSAC 7 cut(s) 308, 445, 1436, 1714, 1891, 2276, 2351
TspGWI ACGGA 4 cut(s) 29, 216, 625, 2163
TspRI CASTG 3 cut(s) 1794, 1902, 2224
Van91I CCANNNNNTGG 1 cut(s) 2334
VpaK11BI GGWCC 2 cut(s) 16, 298
XapI RAATTY 5 cut(s) 204, 1209, 1610, 1682, 2470
XbaI TCTAGA 1 cut(s) 841
XceI RCATGY 3 cut(s) 602, 1345, 1582
XhoI CTCGAG 1 cut(s) 2202
XmiI GTMKAC 2 cut(s) 151, 1315
XmnI GAANNNNTTC 1 cut(s) 561
XspI CTAG 4 cut(s) 450, 842, 1161, 1979
Zsp2I ATGCAT 2 cut(s) 247, 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.