Rroxscaffold_1G00024410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000074
Physical Location & Seq
Reverse (-)
30312816 .. 30317090
4275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00024410.1

Sequence Viewer

Length: 309 bp
ATGGAGAGTGGATTGCGCGATATTCTGAAAATGTACTACAATTCTCTCATGGATTTGAACAGTGAGGAAGGATCTAGCAATGGAAGTTCATATGCAGGTATGGAAGACACAGATTTTACAAAAGAGGATGATATGCAGGATTTCACATTATTCAGAGGGAAGCCATATCAGGATTTGATATTAGATGATTTGAAGGAAGTTGAGTTTAATACTATTGAGGAGGTCGACAGATTCTACAATTACTACGATGAAGGGCCCTTCCCCAACGACGAGGGCTACGATGGTGCATCACACAGTGATGACATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.82

Weight (kDa)

4.05

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 225
AccII CGCG 1 cut(s) 18
AclWI GGATC 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 296
AfaI GTAC 1 cut(s) 35
AgsI TTSAA 2 cut(s) 58, 193
AlwI GGATC 1 cut(s) 79
AoxI GGCC 1 cut(s) 254
ApaI GGGCCC 1 cut(s) 258
AspLEI GCGC 1 cut(s) 18
AspS9I GGNCC 2 cut(s) 254, 255
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 111
BccI CCATC 1 cut(s) 275
BfaI CTAG 1 cut(s) 75
BfuAI ACCTGC 1 cut(s) 86
BmgT120I GGNCC 2 cut(s) 254, 255
BmiI GGNNCC 1 cut(s) 256
BmsI GCATC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 85
BseGI GGATG 1 cut(s) 133
BseMI GCAATG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 233
BseSI GKGCMC 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 1 cut(s) 256
BsnI GGCC 1 cut(s) 256
Bsp120I GGGCCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 71
BspANI GGCC 1 cut(s) 256
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 256
BspMI ACCTGC 1 cut(s) 86
BspPI GGATC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 85
BssMI GATC 1 cut(s) 71
Bst4CI ACNGT 2 cut(s) 62, 296
BstF5I GGATG 1 cut(s) 133
BstFNI CGCG 1 cut(s) 18
BstHHI GCGC 1 cut(s) 18
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 1 cut(s) 18
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BsuRI GGCC 1 cut(s) 256
BtsCI GGATG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 67, 301
BveI ACCTGC 1 cut(s) 86
CfoI GCGC 1 cut(s) 18
Cfr13I GGNCC 2 cut(s) 254, 255
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 49
CviJI RGCY 3 cut(s) 163, 256, 276
CviKI_1 RGCY 3 cut(s) 163, 256, 276
CviQI GTAC 1 cut(s) 34
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
DraIII CACNNNGTG 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 258
EcoO109I RGGNCCY 2 cut(s) 254, 255
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 1 cut(s) 52
FaiI YATR 6 cut(s) 50, 91, 93, 101, 134, 166
FatI CATG 1 cut(s) 48
FauNDI CATATG 1 cut(s) 91
FblI GTMKAC 1 cut(s) 225
FokI GGATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 258
FspBI CTAG 1 cut(s) 75
GlaI GCGC 1 cut(s) 17
HaeIII GGCC 1 cut(s) 256
HhaI GCGC 1 cut(s) 18
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 16
HinP1I GCGC 1 cut(s) 16
HincII GTYRAC 1 cut(s) 226
HindII GTYRAC 1 cut(s) 226
HinfI GANTC 1 cut(s) 231
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 2 cut(s) 27, 155
Hpy188III TCNNGA 1 cut(s) 170
Hpy8I GTNNAC 1 cut(s) 226
Hpy99I CGWCG 1 cut(s) 272
HpyAV CCTTC 4 cut(s) 62, 187, 245, 268
HpyCH4III ACNGT 2 cut(s) 62, 296
HpyCH4V TGCA 3 cut(s) 95, 136, 287
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 16
Kzo9I GATC 1 cut(s) 71
LpnPI CCDG 3 cut(s) 81, 122, 155
LweI GCATC 1 cut(s) 296
MaeI CTAG 1 cut(s) 75
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MboII GAAGA 1 cut(s) 116
MflI RGATCY 1 cut(s) 71
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 2 cut(s) 40, 238
MnlI CCTC 6 cut(s) 58, 118, 149, 211, 214, 265
MseI TTAA 2 cut(s) 207, 307
MslI CAYNNNNRTG 1 cut(s) 297
MvnI CGCG 1 cut(s) 18
NdeI CATATG 1 cut(s) 91
NdeII GATC 1 cut(s) 71
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 1 cut(s) 231
PspN4I GGNNCC 1 cut(s) 256
PspOMI GGGCCC 1 cut(s) 254
PspPI GGNCC 2 cut(s) 254, 255
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 297
SalI GTCGAC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 207, 307
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 2 cut(s) 254, 255
SduI GDGCHC 1 cut(s) 258
SetI ASST 2 cut(s) 100, 225
SfaNI GCATC 1 cut(s) 296
SgeI CNNG 7 cut(s) 29, 61, 87, 108, 149, 182, 283
SmiMI CAYNNNNRTG 1 cut(s) 297
Sse9I AATT 2 cut(s) 40, 238
SspMI CTAG 1 cut(s) 75
TaaI ACNGT 2 cut(s) 62, 296
TaqI TCGA 1 cut(s) 225
TasI AATT 2 cut(s) 40, 238
TatI WGTACW 1 cut(s) 33
TfiI GAWTC 1 cut(s) 231
Tru1I TTAA 2 cut(s) 207, 307
Tru9I TTAA 2 cut(s) 207, 307
TscAI CASTG 2 cut(s) 67, 301
TspDTI ATGAA 2 cut(s) 78, 264
TspRI CASTG 2 cut(s) 67, 301
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.