RchiOBHm_Chr5g0039441

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000074
Physical Location & Seq
Forward (+)
34133391 .. 34138895
5505 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31801

Sequence Viewer

Length: 2325 bp
ATGGAGGAGAGTGGTTTGCGATATACTGACCGACAATACTACAATTCTGGCATGGACCCAAACGCTGAAGAAGGATCCAGTACCGACAATTCGGATGAGGAGATTGAATACACAAATTTGATGGAAGAGGCAGAAATGCAAGATTGTACACGATACAGAGGGAAGCTGTATAAGGATTTGAAATTAGAGGATTTGAAGGAAGTTGAGTTTAATAGCATCGAGGAAGTGGACAAGTTCTACTCTTACTATTCTCTAGCGAAGGGGTTCAGTGTAAGGAAGCAGAAGCTTGACAAGAACCGTGCGGGACTAGTCATTAGAAGACAGTTGGTTTGCTCGAAGCAAGGGAAGCGAAGAGCCCCAAAAGATACTATTAGTCATCAGCAAGGGTCGAAGGGGAAGCAGGACAATTGTCAGCTAAGTTCAATTGGGAATTGTCAACAGAACTCGACAAATATCAGTGGGCAGAACCCTCACAAAAAGCAGTGCACTGAAACCCGACGAGCAACAAGAGTTAATTGTCCAGCAAGTTTTGTTGTTAGGTTTTGTACCAAAAGGAGGGTGTACTATGCCTCAGAATTCATAACTGAACACAACCATGCTTTGGGTAGACCCGAGCATCGTCAGTTTCGAAGATCACACCTCAGGGACCGCAACCTTGCTCAGCTTAATGCATCAAGGAAAATTGTAGTGAGAACATGCCATGCTTATGAGTTCTTGGTACACCAAGCTGGAGGCTACGAGTTTGTTGGATTATACAACAAACCACAGGGTGAAAGGAAAGAAGTAGTGATGGATGGGGATGCACAGTCTTTGGTAACTTGGATGAATTTCAAGGCAATGCGGGACCCCCATTTTTATTGCATATTCAGTGTTGATAAGGAGGGGAGGCTTGCAAATGTGTTTTGGCGAGATGGGCAGTCGTTAACCGATTACAATGCTTTTGGTGAGGTTCTGATTTTCGACAGCAGTGAAAAATGCAACATATATGGCAAGCCCTTGGCTGTATTCGTCGGGTGTAATAACCACAGAGCCACAGTCCTTTTTGGTTATGCATTGTTAGTAGATGAAACAAAGGAAACATATGATTGGGTGATTACATGCTTTCTGACCTCCATGCGTGGGAAAAAACCAATTTCGGTGATCACAAATAGTGATGATGCGATATGCGATGTGGTAACGAATTTGATACCAAGGGCTAGACACCGACTTTGTGCATGGCATGTCGGGAAAAATGTGTGTCAGCATTTGAAAGACGTGGATACACAGAGACACTTTTTCCATTTGATTTTTGCTGGACTTACTATTGAGGAATGGGAAATGGCTTGGCAGTACTTTGTGGCAATGAACCGGCTGGAAAACAATGAATGGGTGACTAGTATGTACAATAAACGTGAAAGGTGGGCGGAGGCCTTTTTACGAGACCATTTTTTTGGAGGAATCTGCAGCACCCAACGATGTGACAGGATGCATAGAAATCTTGAAGAAGGTATTGACCGTTATATGAGGCTGTATGAGGTCTTGCCCCGGATGGAGAAAACAATTGAGCGGATAAGAAATCAGGTCCTACAGGATGATTACCAATCACAGAACTATGACCCTGTGTATGGCAGCCACATGCGTTGTTTGCAGGAGGAGATTGGGAAAAGGTTCACCCATGACATCTTTCTCTTAATCAAGGAGCAGATTAATTTTGAGTCCAAGTTTGTTATTGGGCCGAGAAGTGTTCATCCAAAAACTGGTGCATCATTGATTTCGCTGATGCAATATGGAAAGCCTGAGCGGAGGTGGATTGTGTCGTACCAGCCTGATGAAAGCAATCCAACATTAGTGTGTTCTTGCAAACTGTTCGAGTCTGATGGAATTCCCTGTTGTCACATTTTTGCTGTCATGAAATTTGAGATGCTCACAACATTCCCAGAATCGTTGGTGAATAAAAGGTGGACAAAAGAAGCCACTGTTAAGACAGCAATATCGAGTTCCGGTTTGGTTAGTAACATGTCTGTGCAGATTGCACGGTATGGTGAATTGATGGTACAGTGTGCTAAAATCTGCCATATTGCTTCCTATAGTGAGGAGGGGTACAATGAGATCAGAGAAGCTCTGAGCCAGCTGACCATACGATCCCAAAAGTACAGCGGTGAGAGTGAGTTTGAAAATGGTGTCCATAGCCAAAGCCAGCCCATGAATTTGACTCATCACCTCGAAGAAGCCCGGGCATTTGAGTTTTTTGCTGGGTATGAGAAAAGTAAAAATGCCGCTTTGGACTCCCAAATTACTGGACTTCCAGATTTCTTTCAAAACTTCAGGCCCTTTCCCAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

774

Amino Acids

89.91

Weight (kDa)

7.91

Isoelectric Point (pI)

45.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 78 - 201 2.5e-11 FAR1 DNA-binding domain
MULE PF10551 317 - 411 1.5e-17 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 601, 1736
AccBSI CCGCTC 2 cut(s) 1546, 1780
AccI GTMKAC 1 cut(s) 607
AciI CCGC 8 cut(s) 302, 649, 841, 1403, 1546, 1780, 2136, 2256
AclWI GGATC 3 cut(s) 69, 82, 2115
AcsI RAATTY 7 cut(s) 115, 575, 826, 1180, 1860, 1892, 2185
AcuI CTGAAG 2 cut(s) 87, 2287
AdeI CACNNNGTG 1 cut(s) 770
AfiI CCNNNNNNNGG 5 cut(s) 555, 601, 1119, 1604, 1736
AflIII ACRYGT 1 cut(s) 1995
AgsI TTSAA 9 cut(s) 107, 181, 196, 423, 832, 1249, 1481, 2153, 2297
AhlI ACTAGT 2 cut(s) 307, 1373
AjiI CACGTC 1 cut(s) 1255
AluBI AGCT 7 cut(s) 166, 286, 415, 664, 728, 2099, 2110
AluI AGCT 7 cut(s) 166, 286, 415, 664, 728, 2099, 2110
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 2 cut(s) 1261, 1413
Alw44I GTGCAC 1 cut(s) 484
AlwI GGATC 3 cut(s) 69, 82, 2115
Ama87I CYCGRG 2 cut(s) 611, 2211
AoxI GGCC 3 cut(s) 1407, 1712, 2306
ApaLI GTGCAC 1 cut(s) 484
ApeKI GCWGC 2 cut(s) 1443, 1608
ApoI RAATTY 7 cut(s) 115, 575, 826, 1180, 1860, 1892, 2185
ArsI GACNNNNNNTTYG 6 cut(s) 312, 344, 1191, 1223, 1412, 1444
AseI ATTAAT 1 cut(s) 1686
Asp700I GAANNNNTTC 2 cut(s) 263, 1646
AspS9I GGNCC 6 cut(s) 55, 646, 844, 1561, 1712, 2307
AsuC2I CCSGG 3 cut(s) 1525, 2212, 2213
AsuII TTCGAA 1 cut(s) 628
AvaI CYCGRG 2 cut(s) 611, 2211
AvaII GGWCC 4 cut(s) 55, 646, 844, 1561
AxyI CCTNAGG 1 cut(s) 641
BaeGI GKGCMC 1 cut(s) 488
BamHI GGATCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 325
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 2 cut(s) 1455, 1620
BccI CCATC 7 cut(s) 115, 784, 788, 905, 1522, 1850, 2023
BcgI CGANNNNNNTGC 4 cut(s) 917, 951, 1828, 1862
BciVI GTATCC 1 cut(s) 1252
BclI TGATCA 1 cut(s) 1140
BcnI CCSGG 3 cut(s) 1525, 2212, 2213
BcoDI GTCTC 2 cut(s) 1261, 1413
BcuI ACTAGT 2 cut(s) 307, 1373
BfaI CTAG 4 cut(s) 254, 308, 1197, 1374
BfmI CTRYAG 3 cut(s) 1441, 1565, 2065
BfuI GTATCC 1 cut(s) 1252
BisI GCNGC 3 cut(s) 1444, 1609, 2256
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 3 cut(s) 1445, 1610, 2257
BmcAI AGTACT 1 cut(s) 1331
Bme1390I CCNGG 3 cut(s) 1525, 2212, 2213
Bme18I GGWCC 4 cut(s) 55, 646, 844, 1561
BmeT110I CYCGRG 2 cut(s) 611, 2211
BmgBI CACGTC 1 cut(s) 1255
BmgT120I GGNCC 6 cut(s) 55, 646, 844, 1561, 1712, 2307
BmiI GGNNCC 5 cut(s) 57, 76, 647, 845, 846
BmrFI CCNGG 3 cut(s) 1525, 2212, 2213
BmsI GCATC 9 cut(s) 225, 625, 680, 790, 1147, 1455, 1749, 1751, 1890
BoxI GACNNNNGTC 1 cut(s) 408
BpiI GAAGAC 1 cut(s) 325
BpmI CTGGAG 1 cut(s) 750
Bpu10I CCTNAGC 1 cut(s) 1776
Bpu1102I GCTNAGC 1 cut(s) 660
Bpu14I TTCGAA 1 cut(s) 628
BpuMI CCSGG 3 cut(s) 1525, 2212, 2213
BsaI GGTCTC 1 cut(s) 1413
BsaJI CCNNGG 4 cut(s) 996, 1190, 1523, 2211
BsaWI WCCGGW 1 cut(s) 1979
Bsc4I CCNNNNNNNGG 5 cut(s) 555, 601, 1119, 1604, 1736
Bse118I RCCGGY 1 cut(s) 1347
Bse1I ACTGG 3 cut(s) 78, 1741, 2281
Bse21I CCTNAGG 1 cut(s) 641
Bse3DI GCAATG 2 cut(s) 843, 1347
BseDI CCNNGG 4 cut(s) 996, 1190, 1523, 2211
BseGI GGATG 8 cut(s) 100, 799, 805, 828, 1470, 1533, 1576, 1726
BseLI CCNNNNNNNGG 5 cut(s) 555, 601, 1119, 1604, 1736
BseMI GCAATG 2 cut(s) 843, 1347
BseMII CTCAG 5 cut(s) 585, 655, 674, 1767, 2093
BseNI ACTGG 3 cut(s) 78, 1741, 2281
BseRI GAGGAG 4 cut(s) 20, 113, 1646, 2087
BseSI GKGCMC 1 cut(s) 488
BseXI GCAGC 2 cut(s) 1455, 1620
BseYI CCCAGC 1 cut(s) 2231
BsgI GTGCAG 1 cut(s) 2024
BshFI GGCC 3 cut(s) 1409, 1714, 2308
BsiHKAI GWGCWC 1 cut(s) 488
BsiHKCI CYCGRG 2 cut(s) 611, 2211
BsiSI CCGG 4 cut(s) 1348, 1525, 1980, 2212
BslFI GGGAC 3 cut(s) 318, 659, 857
BslI CCNNNNNNNGG 5 cut(s) 555, 601, 1119, 1604, 1736
BsmAI GTCTC 2 cut(s) 1261, 1413
BsmFI GGGAC 3 cut(s) 318, 659, 857
BsnI GGCC 3 cut(s) 1409, 1714, 2308
Bso31I GGTCTC 1 cut(s) 1413
BsoBI CYCGRG 2 cut(s) 611, 2211
Bsp119I TTCGAA 1 cut(s) 628
Bsp1286I GDGCHC 2 cut(s) 358, 488
Bsp1407I TGTACA 2 cut(s) 146, 1380
Bsp143I GATC 5 cut(s) 74, 632, 1140, 2088, 2120
Bsp1720I GCTNAGC 1 cut(s) 660
BspACI CCGC 8 cut(s) 302, 649, 841, 1403, 1546, 1780, 2136, 2256
BspANI GGCC 3 cut(s) 1409, 1714, 2308
BspCNI CTCAG 5 cut(s) 584, 654, 673, 1768, 2094
BspHI TCATGA 1 cut(s) 1887
BspLI GGNNCC 5 cut(s) 57, 76, 647, 845, 846
BspMAI CTGCAG 1 cut(s) 1445
BspPI GGATC 3 cut(s) 69, 82, 2115
BspQI GCTCTTC 1 cut(s) 346
BspT104I TTCGAA 1 cut(s) 628
BspTNI GGTCTC 1 cut(s) 1413
BsrBI CCGCTC 2 cut(s) 1546, 1780
BsrDI GCAATG 2 cut(s) 843, 1347
BsrFI RCCGGY 1 cut(s) 1347
BsrGI TGTACA 2 cut(s) 146, 1380
BsrI ACTGG 3 cut(s) 78, 1741, 2281
BssAI RCCGGY 1 cut(s) 1347
BssECI CCNNGG 4 cut(s) 996, 1190, 1523, 2211
BssMI GATC 5 cut(s) 74, 632, 1140, 2088, 2120
BssT1I CCWWGG 2 cut(s) 996, 1190
Bst4CI ACNGT 9 cut(s) 299, 324, 807, 1036, 1496, 1845, 1957, 2016, 2037
Bst6I CTCTTC 2 cut(s) 120, 346
BstAUI TGTACA 2 cut(s) 146, 1380
BstBI TTCGAA 1 cut(s) 628
BstC8I GCNNGC 4 cut(s) 891, 992, 2108, 2177
BstDEI CTNAG 6 cut(s) 416, 571, 641, 660, 1776, 2102
BstF5I GGATG 8 cut(s) 100, 799, 805, 828, 1470, 1533, 1576, 1726
BstKTI GATC 5 cut(s) 77, 635, 1143, 2091, 2123
BstMAI GTCTC 2 cut(s) 1261, 1413
BstMBI GATC 5 cut(s) 74, 632, 1140, 2088, 2120
BstMWI GCNNNNNNNGC 3 cut(s) 346, 913, 1624
BstNSI RCATGY 5 cut(s) 699, 1101, 1223, 1618, 1999
BstPAI GACNNNNGTC 1 cut(s) 408
BstSCI CCNGG 3 cut(s) 1523, 2210, 2211
BstSFI CTRYAG 3 cut(s) 1441, 1565, 2065
BstSLI GKGCMC 1 cut(s) 488
BstV1I GCAGC 2 cut(s) 1455, 1620
BstV2I GAAGAC 1 cut(s) 325
BstX2I RGATCY 1 cut(s) 74
BstXI CCANNNNNNTGG 2 cut(s) 1430, 2276
BstYI RGATCY 1 cut(s) 74
Bsu36I CCTNAGG 1 cut(s) 641
BsuI GTATCC 1 cut(s) 1252
BsuRI GGCC 3 cut(s) 1409, 1714, 2308
BtgZI GCGATG 1 cut(s) 1182
BtrI CACGTC 1 cut(s) 1255
BtsCI GGATG 8 cut(s) 100, 799, 805, 828, 1470, 1533, 1576, 1726
BtsI GCAGTG 2 cut(s) 488, 973
BtsIMutI CAGTG 8 cut(s) 274, 463, 486, 488, 874, 973, 1953, 2042
Cac8I GCNNGC 4 cut(s) 891, 992, 2108, 2177
CciI TCATGA 1 cut(s) 1887
Cfr10I RCCGGY 1 cut(s) 1347
Cfr13I GGNCC 6 cut(s) 55, 646, 844, 1561, 1712, 2307
Cfr9I CCCGGG 1 cut(s) 2211
CspCI CAANNNNNGTGG 2 cut(s) 1601, 1636
DdeI CTNAG 6 cut(s) 416, 571, 641, 660, 1776, 2102
DpnI GATC 5 cut(s) 76, 634, 1142, 2090, 2122
DpnII GATC 5 cut(s) 74, 632, 1140, 2088, 2120
DraIII CACNNNGTG 1 cut(s) 770
Eam1104I CTCTTC 2 cut(s) 120, 346
EarI CTCTTC 2 cut(s) 120, 346
EciI GGCGGA 1 cut(s) 1418
Eco130I CCWWGG 2 cut(s) 996, 1190
Eco147I AGGCCT 1 cut(s) 1409
Eco24I GRGCYC 1 cut(s) 358
Eco31I GGTCTC 1 cut(s) 1413
Eco47I GGWCC 4 cut(s) 55, 646, 844, 1561
Eco57I CTGAAG 2 cut(s) 87, 2287
Eco81I CCTNAGG 1 cut(s) 641
Eco88I CYCGRG 2 cut(s) 611, 2211
EcoO109I RGGNCCY 3 cut(s) 844, 1561, 2307
EcoRI GAATTC 2 cut(s) 575, 1860
EcoT14I CCWWGG 2 cut(s) 996, 1190
EcoT22I ATGCAT 3 cut(s) 673, 1054, 1470
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 2 cut(s) 996, 1190
FaqI GGGAC 3 cut(s) 318, 659, 857
FauI CCCGC 2 cut(s) 295, 834
FauNDI CATATG 1 cut(s) 1081
FbaI TGATCA 1 cut(s) 1140
FblI GTMKAC 1 cut(s) 607
Fnu4HI GCNGC 3 cut(s) 1444, 1609, 2256
FokI GGATG 8 cut(s) 107, 806, 812, 835, 1477, 1540, 1583, 1713
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 3 cut(s) 1444, 1609, 2256
FspBI CTAG 4 cut(s) 254, 308, 1197, 1374
GluI GCNGC 3 cut(s) 1444, 1609, 2256
GsaI CCCAGC 1 cut(s) 2235
GsuI CTGGAG 1 cut(s) 750
HaeIII GGCC 3 cut(s) 1409, 1714, 2308
HapII CCGG 4 cut(s) 1348, 1525, 1980, 2212
HincII GTYRAC 2 cut(s) 437, 924
HindII GTYRAC 2 cut(s) 437, 924
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 6 cut(s) 1437, 1694, 1850, 1919, 2191, 2264
HpaI GTTAAC 1 cut(s) 924
HpaII CCGG 4 cut(s) 1348, 1525, 1980, 2212
Hpy188I TCNGA 7 cut(s) 94, 574, 954, 1107, 1855, 2093, 2103
Hpy188III TCNNGA 4 cut(s) 1225, 1478, 1888, 2285
Hpy99I CGWCG 2 cut(s) 501, 1013
HpyAV CCTTC 5 cut(s) 65, 190, 253, 385, 1478
HpyCH4III ACNGT 9 cut(s) 299, 324, 807, 1036, 1496, 1845, 1957, 2016, 2037
HpyCH4IV ACGT 2 cut(s) 1254, 1390
HpyF10VI GCNNNNNNNGC 3 cut(s) 346, 913, 1624
HpyF3I CTNAG 6 cut(s) 416, 571, 641, 660, 1776, 2102
HpySE526I ACGT 2 cut(s) 1254, 1390
KflI GGGWCCC 1 cut(s) 844
Ksp22I TGATCA 1 cut(s) 1140
KspAI GTTAAC 1 cut(s) 924
Kzo9I GATC 5 cut(s) 74, 632, 1140, 2088, 2120
LguI GCTCTTC 1 cut(s) 346
LmnI GCTCC 1 cut(s) 1678
Lsp1109I GCAGC 2 cut(s) 1455, 1620
LweI GCATC 9 cut(s) 225, 625, 680, 790, 1147, 1455, 1749, 1751, 1890
MaeI CTAG 4 cut(s) 254, 308, 1197, 1374
MaeII ACGT 2 cut(s) 1254, 1390
MaeIII GTNAC 6 cut(s) 814, 1174, 1369, 1457, 1871, 1991
MalI GATC 5 cut(s) 76, 634, 1142, 2090, 2122
MbiI CCGCTC 2 cut(s) 1546, 1780
MboI GATC 5 cut(s) 74, 632, 1140, 2088, 2120
MboII GAAGA 7 cut(s) 80, 137, 330, 363, 642, 1493, 2216
MfeI CAATTG 3 cut(s) 406, 423, 1539
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 2 cut(s) 358, 488
MlyI GAGTC 4 cut(s) 1703, 1859, 2185, 2258
MmeI TCCRAC 2 cut(s) 727, 1844
Mph1103I ATGCAT 3 cut(s) 673, 1054, 1470
MroXI GAANNNNTTC 2 cut(s) 263, 1646
MseI TTAA 7 cut(s) 210, 513, 666, 923, 1670, 1686, 1959
MslI CAYNNNNRTG 4 cut(s) 594, 705, 1828, 2000
MspA1I CMGCKG 2 cut(s) 2110, 2136
MspI CCGG 4 cut(s) 1348, 1525, 1980, 2212
MspR9I CCNGG 3 cut(s) 1525, 2212, 2213
MunI CAATTG 3 cut(s) 406, 423, 1539
MwoI GCNNNNNNNGC 3 cut(s) 346, 913, 1624
NciI CCSGG 3 cut(s) 1525, 2212, 2213
NdeI CATATG 1 cut(s) 1081
NdeII GATC 5 cut(s) 74, 632, 1140, 2088, 2120
NlaIV GGNNCC 5 cut(s) 57, 76, 647, 845, 846
NmeAIII GCCGAG 1 cut(s) 1740
NmuCI GTSAC 3 cut(s) 1369, 1457, 1871
NsiI ATGCAT 3 cut(s) 673, 1054, 1470
NspI RCATGY 5 cut(s) 699, 1101, 1223, 1618, 1999
NspV TTCGAA 1 cut(s) 628
PagI TCATGA 1 cut(s) 1887
PceI AGGCCT 1 cut(s) 1409
PciI ACATGT 1 cut(s) 1995
PciSI GCTCTTC 1 cut(s) 346
PcsI WCGNNNNNNNCGW 1 cut(s) 625
PdmI GAANNNNTTC 2 cut(s) 263, 1646
PfeI GAWTC 2 cut(s) 1437, 1919
PflMI CCANNNNNTGG 2 cut(s) 601, 1736
PkrI GCNGC 3 cut(s) 1445, 1610, 2257
PleI GAGTC 4 cut(s) 1702, 1858, 2185, 2258
PpsI GAGTC 4 cut(s) 1702, 1858, 2185, 2258
PpuMI RGGWCCY 2 cut(s) 844, 1561
PscI ACATGT 1 cut(s) 1995
PshAI GACNNNNGTC 1 cut(s) 408
PshBI ATTAAT 1 cut(s) 1686
Psp5II RGGWCCY 2 cut(s) 844, 1561
PspFI CCCAGC 1 cut(s) 2231
PspN4I GGNNCC 5 cut(s) 57, 76, 647, 845, 846
PspPI GGNCC 6 cut(s) 55, 646, 844, 1561, 1712, 2307
PspPPI RGGWCCY 2 cut(s) 844, 1561
PstI CTGCAG 1 cut(s) 1445
PsuI RGATCY 1 cut(s) 74
PvuII CAGCTG 1 cut(s) 2110
RseI CAYNNNNRTG 4 cut(s) 594, 705, 1828, 2000
SapI GCTCTTC 1 cut(s) 346
SaqAI TTAA 7 cut(s) 210, 513, 666, 923, 1670, 1686, 1959
SatI GCNGC 3 cut(s) 1444, 1609, 2256
Sau3AI GATC 5 cut(s) 74, 632, 1140, 2088, 2120
Sau96I GGNCC 6 cut(s) 55, 646, 844, 1561, 1712, 2307
ScaI AGTACT 1 cut(s) 1331
SchI GAGTC 4 cut(s) 1703, 1859, 2185, 2258
ScrFI CCNGG 3 cut(s) 1525, 2212, 2213
SduI GDGCHC 2 cut(s) 358, 488
SfaNI GCATC 9 cut(s) 225, 625, 680, 790, 1147, 1455, 1749, 1751, 1890
SfcI CTRYAG 3 cut(s) 1441, 1565, 2065
SfuI TTCGAA 1 cut(s) 628
SinI GGWCC 4 cut(s) 55, 646, 844, 1561
SmaI CCCGGG 1 cut(s) 2213
SmiMI CAYNNNNRTG 4 cut(s) 594, 705, 1828, 2000
SpeI ACTAGT 2 cut(s) 307, 1373
SrfI GCCCGGGC 1 cut(s) 2213
SseBI AGGCCT 1 cut(s) 1409
SsiI CCGC 8 cut(s) 302, 649, 841, 1403, 1546, 1780, 2136, 2256
SspMI CTAG 4 cut(s) 254, 308, 1197, 1374
StuI AGGCCT 1 cut(s) 1409
StyD4I CCNGG 3 cut(s) 1523, 2210, 2211
StyI CCWWGG 2 cut(s) 996, 1190
TaaI ACNGT 9 cut(s) 299, 324, 807, 1036, 1496, 1845, 1957, 2016, 2037
TaiI ACGT 2 cut(s) 1257, 1393
TaqI TCGA 9 cut(s) 219, 335, 389, 446, 628, 960, 1848, 1973, 2202
TaqII GACCGA 1 cut(s) 45
TatI WGTACW 5 cut(s) 146, 561, 1329, 1380, 2130
TauI GCSGC 1 cut(s) 2258
TfiI GAWTC 2 cut(s) 1437, 1919
Tru1I TTAA 7 cut(s) 210, 513, 666, 923, 1670, 1686, 1959
Tru9I TTAA 7 cut(s) 210, 513, 666, 923, 1670, 1686, 1959
TscAI CASTG 8 cut(s) 274, 463, 488, 493, 874, 973, 1960, 2042
TseFI GTSAC 3 cut(s) 1369, 1457, 1871
TseI GCWGC 2 cut(s) 1443, 1608
Tsp45I GTSAC 3 cut(s) 1369, 1457, 1871
TspDTI ATGAA 9 cut(s) 568, 839, 1080, 1358, 1377, 1715, 1824, 1904, 2198
TspMI CCCGGG 1 cut(s) 2211
TspRI CASTG 8 cut(s) 274, 463, 488, 493, 874, 973, 1960, 2042
Van91I CCANNNNNTGG 2 cut(s) 601, 1736
VneI GTGCAC 1 cut(s) 484
VpaK11BI GGWCC 4 cut(s) 55, 646, 844, 1561
VspI ATTAAT 1 cut(s) 1686
XapI RAATTY 7 cut(s) 115, 575, 826, 1180, 1860, 1892, 2185
XceI RCATGY 5 cut(s) 699, 1101, 1223, 1618, 1999
XmaI CCCGGG 1 cut(s) 2211
XmiI GTMKAC 1 cut(s) 607
XmnI GAANNNNTTC 2 cut(s) 263, 1646
XspI CTAG 4 cut(s) 254, 308, 1197, 1374
ZrmI AGTACT 1 cut(s) 1331
Zsp2I ATGCAT 3 cut(s) 673, 1054, 1470
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.