Rw1G010390

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000074
Physical Location & Seq
Forward (+)
23316795 .. 23318870
2076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G010390.1

Sequence Viewer

Length: 1371 bp
ATGGAGATGAATGGATGTAATCAGTTCAAGAAAGTAGTTCTGGATTTAGGGGTAGAATTTGGAAATGTGGAATTGAATGGGAGAAATTTCAAAGACATCACATATGAGGACGTTAAACATCTATGGTTTCGAACCATAGATGAAGCAGAGAAGTTCTACAAGTATTACTCCCATGTGGCCGGCTTCAGCACAAGGAAAGCTAAAAAAGACATGCATAAAACCAAGAAAATAGTATATCGTAGGCAGTGGGTATGTTCTAAAGCCGGCCGACATGTGTCGGTACAGAAGACGAAAGAGGTTGGCGGTTGTGGAATGAAGGAAGCCCCCAATGGTGATAAGAATAAGGTGTCTAGGAAGAGATTGCTTCATGGAACGAGGATATCTCGAACTGACTGCCCCGCCCAGTTCATGGTTATGTGGTCTAATCACCAAGATTTGTTTTATGTTTCAAAGTTTGTGACGCAGCACAATCACGATCTTGCTATCGCCCCTGAAGTTCATTTCCTTCGCTCCCACCGTAATGTTGAGAGACACGACATTGCACAGGTTGAGTCCCTCCTGCAAGCACAGAGGGATCGCTGGGCGGAGGCTTATTTTAGAGGCTACTTTTTCGGAGGTATGTGTAGCACACAGAGGTGCGAGGGTATGAATTGTCAGTTTAAAAAGCATATCTCCAGGTATACAAAGTTGTCTGATGTTATGCCACGATTGGGGTGGAAACTGAATCGGTTAAGGGATCGCATCATGCGTGACAACTTCAACATAAAAAATAGTACCCCTTTGTTTGATACTCATATGAGGGGCTTCGAGGAGCAGGCGTGCAGAATATTCACACATGACATATTTATTATGATTAAGTCTCAAATCAAATTTGAAGGGAGGTTTGTCGTTCATCAAAGTTTCAAGTTTCCAAATGCTGACTCTAAAGTTTTTTATGTCGGGCAGTATGATAGAGTAGAACGTCGTTGGTGCGTTGAGTATCGAGGCAACAATGGAAACCCGGAGTGGTTCTGCTTGTGCAAAATGTTTGAGTCCGACGGCATTCCTTGTGCGCACTTGTTCTGTGTAATGAAATCCGAGTTGGTTTCAAATTTCCCAGACTGTCTCATTTTGAAGCAATGGACACGTTTAGTCGGGGAAACAATGTTAGCCCCTGCGATTTCCGTAATGTCCAATGAAGTTGCGGATACCAATCTTCCTCCCCCTACAGACAGTCCCACTATTGTGAGGGACCTGTTGATGTCAAGAACGAAGGGAATGTCGAGCAACAGACAAGGGCAGGCGTACAGTCAAGTTAAGAGAAATATAATTACTTACGGACGATGTCATGAGACTGTCACAACCGCGCACGTGCAAAGGGCACCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

456

Amino Acids

53.31

Weight (kDa)

9.54

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 51 - 161 9.3e-14 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1053
AccB1I GGYRCC 1 cut(s) 1360
AccB7I CCANNNNNTGG 1 cut(s) 409
AccI GTMKAC 1 cut(s) 680
AccII CGCG 1 cut(s) 1346
AciI CCGC 5 cut(s) 303, 399, 584, 1184, 1344
AclWI GGATC 2 cut(s) 582, 744
AcoI YGGCCR 2 cut(s) 177, 265
AcsI RAATTY 4 cut(s) 56, 85, 869, 1090
AcuI CTGAAG 2 cut(s) 169, 513
AcvI CACGTG 1 cut(s) 1351
AfaI GTAC 3 cut(s) 282, 775, 1286
AfiI CCNNNNNNNGG 2 cut(s) 409, 710
AflIII ACRYGT 2 cut(s) 271, 1124
AgsI TTSAA 9 cut(s) 28, 76, 91, 450, 760, 875, 904, 1089, 1114
AjnI CCWGG 1 cut(s) 674
AjuI GAANNNNNNNTTGG 2 cut(s) 1064, 1096
AleI CACNNNNGTG 2 cut(s) 634, 1223
AluBI AGCT 1 cut(s) 200
AluI AGCT 1 cut(s) 200
Alw26I GTCTC 4 cut(s) 523, 864, 1109, 1325
AlwI GGATC 2 cut(s) 582, 744
AoxI GGCC 2 cut(s) 177, 265
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 4 cut(s) 56, 85, 869, 1090
ArsI GACNNNNNNTTYG 2 cut(s) 1244, 1276
AspLEI GCGC 2 cut(s) 1054, 1348
AspS9I GGNCC 1 cut(s) 1231
AsuC2I CCSGG 1 cut(s) 1001
AsuHPI GGTGA 2 cut(s) 344, 419
AsuII TTCGAA 1 cut(s) 130
AvaII GGWCC 1 cut(s) 1231
BaeGI GKGCMC 1 cut(s) 1363
BanI GGYRCC 1 cut(s) 1360
BbrPI CACGTG 1 cut(s) 1351
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 475
BceAI ACGGC 1 cut(s) 1054
BcgI CGANNNNNNTGC 2 cut(s) 375, 409
BciT130I CCWGG 1 cut(s) 676
BciVI GTATCC 1 cut(s) 1180
BcnI CCSGG 1 cut(s) 1001
BcoDI GTCTC 4 cut(s) 523, 864, 1109, 1325
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 1206
BfuI GTATCC 1 cut(s) 1180
BisI GCNGC 1 cut(s) 464
BlsI GCNGC 1 cut(s) 465
Bme1390I CCNGG 2 cut(s) 676, 1001
Bme18I GGWCC 1 cut(s) 1231
BmgT120I GGNCC 1 cut(s) 1231
BmiI GGNNCC 2 cut(s) 1232, 1362
BmrFI CCNGG 2 cut(s) 676, 1001
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 1 cut(s) 750
BmuI ACTGGG 1 cut(s) 397
BoxI GACNNNNGTC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 367, 399
BpmI CTGGAG 1 cut(s) 658
Bpu14I TTCGAA 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 1001
BsaAI YACGTR 1 cut(s) 1351
BsaBI GATNNNNATC 1 cut(s) 1191
BsaXI ACNNNNNCTCC 2 cut(s) 803, 833
Bsc4I CCNNNNNNNGG 2 cut(s) 409, 710
Bse118I RCCGGY 2 cut(s) 179, 263
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 2 cut(s) 537, 1124
Bse8I GATNNNNATC 1 cut(s) 1191
BseBI CCWGG 1 cut(s) 676
BseGI GGATG 1 cut(s) 20
BseJI GATNNNNATC 1 cut(s) 1191
BseLI CCNNNNNNNGG 2 cut(s) 409, 710
BseMI GCAATG 2 cut(s) 537, 1124
BseNI ACTGG 1 cut(s) 403
BseRI GAGGAG 1 cut(s) 824
BseSI GKGCMC 1 cut(s) 1363
BseX3I CGGCCG 1 cut(s) 265
BseXI GCAGC 1 cut(s) 475
BseYI CCCAGC 1 cut(s) 579
BsgI GTGCAG 1 cut(s) 841
Bsh1236I CGCG 1 cut(s) 1346
Bsh1285I CGRYCG 1 cut(s) 268
BshFI GGCC 2 cut(s) 179, 267
BshNI GGYRCC 1 cut(s) 1360
BsiEI CGRYCG 1 cut(s) 268
BsiSI CCGG 3 cut(s) 180, 264, 1001
BslFI GGGAC 3 cut(s) 538, 1200, 1244
BslI CCNNNNNNNGG 2 cut(s) 409, 710
BsmAI GTCTC 4 cut(s) 523, 864, 1109, 1325
BsmFI GGGAC 3 cut(s) 538, 1200, 1244
BsmI GAATGC 1 cut(s) 1041
BsnI GGCC 2 cut(s) 179, 267
Bsp119I TTCGAA 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 1363
Bsp143I GATC 3 cut(s) 475, 574, 736
BspACI CCGC 5 cut(s) 303, 399, 584, 1184, 1344
BspANI GGCC 2 cut(s) 179, 267
BspFNI CGCG 1 cut(s) 1346
BspHI TCATGA 1 cut(s) 1327
BspLI GGNNCC 2 cut(s) 1232, 1362
BspPI GGATC 2 cut(s) 582, 744
BspT104I TTCGAA 1 cut(s) 130
BspT107I GGYRCC 1 cut(s) 1360
BsrDI GCAATG 2 cut(s) 537, 1124
BsrFI RCCGGY 2 cut(s) 179, 263
BsrI ACTGG 1 cut(s) 403
BssAI RCCGGY 2 cut(s) 179, 263
BssMI GATC 3 cut(s) 475, 574, 736
BssNAI GTATAC 1 cut(s) 681
Bst1107I GTATAC 1 cut(s) 681
Bst2UI CCWGG 1 cut(s) 676
Bst4CI ACNGT 5 cut(s) 518, 1103, 1214, 1289, 1336
Bst6I CTCTTC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 1351
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 6 cut(s) 181, 265, 564, 816, 820, 1281
BstF5I GGATG 1 cut(s) 20
BstFNI CGCG 1 cut(s) 1346
BstHHI GCGC 2 cut(s) 1054, 1348
BstKTI GATC 3 cut(s) 478, 577, 739
BstMAI GTCTC 4 cut(s) 523, 864, 1109, 1325
BstMBI GATC 3 cut(s) 475, 574, 736
BstMCI CGRYCG 1 cut(s) 268
BstNI CCWGG 1 cut(s) 676
BstNSI RCATGY 2 cut(s) 214, 275
BstPAI GACNNNNGTC 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 674, 999
BstSFI CTRYAG 1 cut(s) 1206
BstSLI GKGCMC 1 cut(s) 1363
BstUI CGCG 1 cut(s) 1346
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 293
BstZ17I GTATAC 1 cut(s) 681
BstZI CGGCCG 1 cut(s) 265
BsuI GTATCC 1 cut(s) 1180
BsuRI GGCC 2 cut(s) 179, 267
BtsCI GGATG 1 cut(s) 20
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 1 cut(s) 251
Cac8I GCNNGC 6 cut(s) 181, 265, 564, 816, 820, 1281
CciI TCATGA 1 cut(s) 1327
CfoI GCGC 2 cut(s) 1054, 1348
Cfr10I RCCGGY 2 cut(s) 179, 263
Cfr13I GGNCC 1 cut(s) 1231
CseI GACGC 1 cut(s) 469
Csp6I GTAC 3 cut(s) 281, 774, 1285
CviAII CATG 8 cut(s) 173, 211, 272, 368, 409, 745, 836, 1328
CviQI GTAC 3 cut(s) 281, 774, 1285
DpnI GATC 3 cut(s) 477, 576, 738
DpnII GATC 3 cut(s) 475, 574, 736
DraI TTTAAA 1 cut(s) 661
EaeI YGGCCR 2 cut(s) 177, 265
EagI CGGCCG 1 cut(s) 265
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
EciI GGCGGA 1 cut(s) 599
EclXI CGGCCG 1 cut(s) 265
Eco32I GATATC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 1231
Eco52I CGGCCG 1 cut(s) 265
Eco57I CTGAAG 2 cut(s) 169, 513
Eco72I CACGTG 1 cut(s) 1351
EcoO109I RGGNCCY 1 cut(s) 1231
EcoRII CCWGG 1 cut(s) 674
EcoRV GATATC 1 cut(s) 381
EcoT22I ATGCAT 1 cut(s) 216
FaeI CATG 8 cut(s) 176, 214, 275, 371, 412, 748, 839, 1331
FaqI GGGAC 3 cut(s) 538, 1200, 1244
FatI CATG 8 cut(s) 172, 210, 271, 367, 408, 744, 835, 1327
FauI CCCGC 1 cut(s) 406
FauNDI CATATG 2 cut(s) 103, 795
FblI GTMKAC 1 cut(s) 680
Fnu4HI GCNGC 1 cut(s) 464
FokI GGATG 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 464
FspAI RTGCGCAY 1 cut(s) 1053
FspBI CTAG 1 cut(s) 351
FspI TGCGCA 1 cut(s) 1053
GlaI GCGC 2 cut(s) 1053, 1347
GluI GCNGC 1 cut(s) 464
GsaI CCCAGC 1 cut(s) 583
GsuI CTGGAG 1 cut(s) 658
HaeIII GGCC 2 cut(s) 179, 267
HapII CCGG 3 cut(s) 180, 264, 1001
HgaI GACGC 1 cut(s) 469
HhaI GCGC 2 cut(s) 1054, 1348
Hin1II CATG 8 cut(s) 176, 214, 275, 371, 412, 748, 839, 1331
Hin6I GCGC 2 cut(s) 1052, 1346
HinP1I GCGC 2 cut(s) 1052, 1346
HinfI GANTC 4 cut(s) 551, 724, 920, 1031
HpaII CCGG 3 cut(s) 180, 264, 1001
HphI GGTGA 2 cut(s) 344, 419
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 4 cut(s) 614, 694, 1036, 1078
Hpy188III TCNNGA 6 cut(s) 28, 41, 384, 473, 1245, 1328
Hpy8I GTNNAC 1 cut(s) 681
Hpy99I CGWCG 2 cut(s) 966, 1040
HpyAV CCTTC 4 cut(s) 310, 515, 869, 1246
HpyCH4III ACNGT 5 cut(s) 518, 1103, 1214, 1289, 1336
HpyCH4IV ACGT 4 cut(s) 111, 961, 1126, 1350
HpyCH4V TGCA 6 cut(s) 214, 542, 562, 822, 1020, 1354
HpySE526I ACGT 4 cut(s) 111, 961, 1126, 1350
Hsp92II CATG 8 cut(s) 176, 214, 275, 371, 412, 748, 839, 1331
HspAI GCGC 2 cut(s) 1052, 1346
KroI GCCGGC 2 cut(s) 179, 263
KroNI GCCGGC 2 cut(s) 181, 265
Kzo9I GATC 3 cut(s) 475, 574, 736
LmnI GCTCC 2 cut(s) 515, 811
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 1 cut(s) 750
MaeI CTAG 1 cut(s) 351
MaeII ACGT 4 cut(s) 111, 961, 1126, 1350
MaeIII GTNAC 3 cut(s) 457, 749, 1336
MalI GATC 3 cut(s) 477, 576, 738
MboI GATC 3 cut(s) 475, 574, 736
MboII GAAGA 3 cut(s) 298, 367, 1187
MhlI GDGCHC 1 cut(s) 1363
MluCI AATT 7 cut(s) 56, 71, 85, 649, 869, 1090, 1308
MlyI GAGTC 3 cut(s) 560, 914, 1040
MmeI TCCRAC 1 cut(s) 1059
Mph1103I ATGCAT 1 cut(s) 216
MroNI GCCGGC 2 cut(s) 179, 263
MseI TTAA 5 cut(s) 114, 660, 731, 855, 1296
MslI CAYNNNNRTG 4 cut(s) 413, 519, 634, 1223
MspI CCGG 3 cut(s) 180, 264, 1001
MspR9I CCNGG 2 cut(s) 676, 1001
Mva1269I GAATGC 1 cut(s) 1041
MvaI CCWGG 1 cut(s) 676
MvnI CGCG 1 cut(s) 1346
NaeI GCCGGC 2 cut(s) 181, 265
NciI CCSGG 1 cut(s) 1001
NdeI CATATG 2 cut(s) 103, 795
NdeII GATC 3 cut(s) 475, 574, 736
NgoMIV GCCGGC 2 cut(s) 179, 263
NlaIII CATG 8 cut(s) 176, 214, 275, 371, 412, 748, 839, 1331
NlaIV GGNNCC 2 cut(s) 1232, 1362
NmuCI GTSAC 3 cut(s) 457, 749, 1336
NsbI TGCGCA 1 cut(s) 1053
NsiI ATGCAT 1 cut(s) 216
NspI RCATGY 2 cut(s) 214, 275
NspV TTCGAA 1 cut(s) 130
OliI CACNNNNGTG 2 cut(s) 634, 1223
PagI TCATGA 1 cut(s) 1327
PciI ACATGT 1 cut(s) 271
PcsI WCGNNNNNNNCGW 2 cut(s) 514, 745
PctI GAATGC 1 cut(s) 1041
PdiI GCCGGC 2 cut(s) 181, 265
PfeI GAWTC 1 cut(s) 724
PflFI GACNNNGTC 1 cut(s) 1323
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 1 cut(s) 465
PleI GAGTC 3 cut(s) 559, 914, 1039
PmaCI CACGTG 1 cut(s) 1351
PmlI CACGTG 1 cut(s) 1351
PpsI GAGTC 3 cut(s) 559, 914, 1039
Ppu21I YACGTR 1 cut(s) 1351
PpuMI RGGWCCY 1 cut(s) 1231
PscI ACATGT 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 274
Psp5II RGGWCCY 1 cut(s) 1231
Psp6I CCWGG 1 cut(s) 674
PspCI CACGTG 1 cut(s) 1351
PspFI CCCAGC 1 cut(s) 579
PspGI CCWGG 1 cut(s) 674
PspN4I GGNNCC 2 cut(s) 1232, 1362
PspPI GGNCC 1 cut(s) 1231
PspPPI RGGWCCY 1 cut(s) 1231
PsyI GACNNNGTC 1 cut(s) 1323
RsaI GTAC 3 cut(s) 282, 775, 1286
RsaNI GTAC 3 cut(s) 281, 774, 1285
RseI CAYNNNNRTG 4 cut(s) 413, 519, 634, 1223
SaqAI TTAA 5 cut(s) 114, 660, 731, 855, 1296
SatI GCNGC 1 cut(s) 464
Sau3AI GATC 3 cut(s) 475, 574, 736
Sau96I GGNCC 1 cut(s) 1231
SchI GAGTC 3 cut(s) 560, 914, 1040
ScrFI CCNGG 2 cut(s) 676, 1001
SduI GDGCHC 1 cut(s) 1363
SfaNI GCATC 1 cut(s) 750
SfcI CTRYAG 1 cut(s) 1206
SfuI TTCGAA 1 cut(s) 130
SinI GGWCC 1 cut(s) 1231
SmiMI CAYNNNNRTG 4 cut(s) 413, 519, 634, 1223
Sse9I AATT 7 cut(s) 56, 71, 85, 649, 869, 1090, 1308
SsiI CCGC 5 cut(s) 303, 399, 584, 1184, 1344
SspI AATATT 1 cut(s) 828
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 2 cut(s) 674, 999
TaaI ACNGT 5 cut(s) 518, 1103, 1214, 1289, 1336
TaiI ACGT 4 cut(s) 114, 964, 1129, 1353
TaqI TCGA 5 cut(s) 130, 385, 807, 982, 1262
TasI AATT 7 cut(s) 56, 71, 85, 649, 869, 1090, 1308
TfiI GAWTC 1 cut(s) 724
Tru1I TTAA 5 cut(s) 114, 660, 731, 855, 1296
Tru9I TTAA 5 cut(s) 114, 660, 731, 855, 1296
TscAI CASTG 1 cut(s) 251
TseFI GTSAC 3 cut(s) 457, 749, 1336
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 3 cut(s) 457, 749, 1336
TspGWI ACGGA 2 cut(s) 1153, 1332
TspRI CASTG 1 cut(s) 251
Tth111I GACNNNGTC 1 cut(s) 1323
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 1231
XapI RAATTY 4 cut(s) 56, 85, 869, 1090
XceI RCATGY 2 cut(s) 214, 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 711
XmiI GTMKAC 1 cut(s) 680
XspI CTAG 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.