Rh5DG239200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000074
Physical Location & Seq
Forward (+)
27361598 .. 27362185
588 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG239200.1

Sequence Viewer

Length: 588 bp
ATGGACACATCAAGAGTGCCTCCGAGTAGAAACGTTGTGAGGGACCCGAAAATATCCCGTACAAAGGGCATGCCCTCTAATCCGACAACAAACACTGAAAATGCCAACAAAGAGCAGCGGCTTTGCGGTAAATGTTTTATGCCCGGTCATAACAGGCGCACCTGTACAGCCGGTGAAGAAGGGGTTCGAAATCGTGGATATGCAGATTCCCATCATACGGTACCTTGTGTTGAAGCTTACTCAGGTTCGGTACCTGATGTTGCACCATCAGTCCCAAATATGGCACACCTATCATCCTATGTGGTAGCCGCAGTCCCTGATCCCCCTGCCTCAGTTCAGCTTCCCGCAGACTTACCATATCATCCCACACCTTGTGTAACTGAGTATGGTATGGAGCTTGATTTTGATGACAAGGGCGCTAGCAGAGTTGGTGGTATTGGTCAATTCCCATTCTTCGTTGCATCCCAGCATTCCTCATCCTTCGGTATTCTGCCTTTTTCATTCAACCTGAACCAGACCGCCCCAAATGATGATGTTACGCAGCTGAAACCGGACTGTTCATATCCACCCCCCAAGTGGATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.14

Weight (kDa)

6.28

Isoelectric Point (pI)

47.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 220, 250
AccB1I GGYRCC 2 cut(s) 220, 250
AciI CCGC 5 cut(s) 118, 126, 309, 345, 519
AclI AACGTT 1 cut(s) 33
AclWI GGATC 3 cut(s) 314, 574, 587
AdeI CACNNNGTG 1 cut(s) 374
AfaI GTAC 4 cut(s) 61, 166, 222, 252
AfiI CCNNNNNNNGG 4 cut(s) 64, 217, 280, 576
AgsI TTSAA 2 cut(s) 233, 505
AluBI AGCT 4 cut(s) 236, 340, 397, 544
AluI AGCT 4 cut(s) 236, 340, 397, 544
AlwI GGATC 3 cut(s) 314, 574, 587
AlwNI CAGNNNCTG 1 cut(s) 317
ApeKI GCWGC 2 cut(s) 115, 541
Asp700I GAANNNNTTC 1 cut(s) 183
Asp718I GGTACC 2 cut(s) 220, 250
AspLEI GCGC 2 cut(s) 159, 419
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 185
AsuII TTCGAA 1 cut(s) 187
AsuNHI GCTAGC 1 cut(s) 419
AvaII GGWCC 1 cut(s) 43
BamHI GGATCC 1 cut(s) 579
BanI GGYRCC 2 cut(s) 220, 250
BbvI GCAGC 2 cut(s) 127, 553
BccI CCATC 2 cut(s) 219, 274
BcnI CCSGG 1 cut(s) 144
BfaI CTAG 1 cut(s) 420
BfoI RGCGCY 1 cut(s) 420
BisI GCNGC 4 cut(s) 116, 119, 309, 542
BlsI GCNGC 4 cut(s) 117, 120, 310, 543
Bme1390I CCNGG 1 cut(s) 144
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 5 cut(s) 44, 45, 222, 252, 581
BmrFI CCNGG 1 cut(s) 144
BmsI GCATC 1 cut(s) 470
BmtI GCTAGC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 144
BsaBI GATNNNNATC 1 cut(s) 210
BsaWI WCCGGW 1 cut(s) 550
Bsc4I CCNNNNNNNGG 4 cut(s) 64, 217, 280, 576
Bse118I RCCGGY 1 cut(s) 170
Bse8I GATNNNNATC 1 cut(s) 210
BseGI GGATG 4 cut(s) 293, 361, 461, 476
BseJI GATNNNNATC 1 cut(s) 210
BseLI CCNNNNNNNGG 4 cut(s) 64, 217, 280, 576
BseMII CTCAG 3 cut(s) 255, 345, 372
BseXI GCAGC 2 cut(s) 127, 553
BseYI CCCAGC 1 cut(s) 465
BshNI GGYRCC 2 cut(s) 220, 250
BsiSI CCGG 3 cut(s) 144, 171, 551
BslFI GGGAC 3 cut(s) 56, 257, 299
BslI CCNNNNNNNGG 4 cut(s) 64, 217, 280, 576
BsmFI GGGAC 3 cut(s) 56, 257, 299
BsmI GAATGC 1 cut(s) 469
Bsp119I TTCGAA 1 cut(s) 187
Bsp1407I TGTACA 1 cut(s) 164
Bsp143I GATC 2 cut(s) 319, 579
BspACI CCGC 5 cut(s) 118, 126, 309, 345, 519
BspCNI CTCAG 3 cut(s) 254, 344, 373
BspLI GGNNCC 5 cut(s) 44, 45, 222, 252, 581
BspOI GCTAGC 1 cut(s) 423
BspPI GGATC 3 cut(s) 314, 574, 587
BspT104I TTCGAA 1 cut(s) 187
BspT107I GGYRCC 2 cut(s) 220, 250
BsrFI RCCGGY 1 cut(s) 170
BsrGI TGTACA 1 cut(s) 164
BssAI RCCGGY 1 cut(s) 170
BssMI GATC 2 cut(s) 319, 579
Bst4CI ACNGT 2 cut(s) 220, 557
BstAUI TGTACA 1 cut(s) 164
BstBI TTCGAA 1 cut(s) 187
BstC8I GCNNGC 2 cut(s) 71, 421
BstDEI CTNAG 3 cut(s) 241, 331, 381
BstF5I GGATG 4 cut(s) 293, 361, 461, 476
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 2 cut(s) 159, 419
BstKTI GATC 2 cut(s) 322, 582
BstMBI GATC 2 cut(s) 319, 579
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 142
BstV1I GCAGC 2 cut(s) 127, 553
BstX2I RGATCY 1 cut(s) 579
BstYI RGATCY 1 cut(s) 579
BtsCI GGATG 4 cut(s) 293, 361, 461, 476
BtsIMutI CAGTG 1 cut(s) 93
Cac8I GCNNGC 2 cut(s) 71, 421
CaiI CAGNNNCTG 1 cut(s) 317
CfoI GCGC 2 cut(s) 159, 419
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 4 cut(s) 60, 165, 221, 251
CviAII CATG 2 cut(s) 70, 585
CviJI RGCY 7 cut(s) 121, 170, 236, 308, 340, 397, 544
CviKI_1 RGCY 7 cut(s) 121, 170, 236, 308, 340, 397, 544
CviQI GTAC 4 cut(s) 60, 165, 221, 251
DdeI CTNAG 3 cut(s) 241, 331, 381
DpnI GATC 2 cut(s) 321, 581
DpnII GATC 2 cut(s) 319, 579
DraIII CACNNNGTG 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 43
EcoO109I RGGNCCY 1 cut(s) 43
FaeI CATG 2 cut(s) 73, 588
FaqI GGGAC 3 cut(s) 56, 257, 299
FatI CATG 2 cut(s) 69, 584
FauI CCCGC 1 cut(s) 352
Fnu4HI GCNGC 4 cut(s) 116, 119, 309, 542
FokI GGATG 4 cut(s) 280, 348, 448, 463
Fsp4HI GCNGC 4 cut(s) 116, 119, 309, 542
FspBI CTAG 1 cut(s) 420
GlaI GCGC 2 cut(s) 158, 418
GluI GCNGC 4 cut(s) 116, 119, 309, 542
GsaI CCCAGC 1 cut(s) 469
HaeII RGCGCY 1 cut(s) 420
HapII CCGG 3 cut(s) 144, 171, 551
HhaI GCGC 2 cut(s) 159, 419
Hin1II CATG 2 cut(s) 73, 588
Hin6I GCGC 2 cut(s) 157, 417
HinP1I GCGC 2 cut(s) 157, 417
HindIII AAGCTT 1 cut(s) 234
HinfI GANTC 1 cut(s) 206
HpaII CCGG 3 cut(s) 144, 171, 551
HphI GGTGA 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 24, 84
Hpy188III TCNNGA 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 173, 490
HpyCH4III ACNGT 2 cut(s) 220, 557
HpyCH4IV ACGT 1 cut(s) 33
HpyCH4V TGCA 3 cut(s) 203, 263, 461
HpyF3I CTNAG 3 cut(s) 241, 331, 381
HpySE526I ACGT 1 cut(s) 33
Hsp92II CATG 2 cut(s) 73, 588
HspAI GCGC 2 cut(s) 157, 417
KflI GGGWCCC 1 cut(s) 43
KpnI GGTACC 2 cut(s) 224, 254
Kzo9I GATC 2 cut(s) 319, 579
LmnI GCTCC 1 cut(s) 394
Lsp1109I GCAGC 2 cut(s) 127, 553
LweI GCATC 1 cut(s) 470
MaeI CTAG 1 cut(s) 420
MaeII ACGT 1 cut(s) 33
MaeIII GTNAC 2 cut(s) 376, 535
MalI GATC 2 cut(s) 321, 581
MboI GATC 2 cut(s) 319, 579
MboII GAAGA 2 cut(s) 188, 445
MflI RGATCY 1 cut(s) 579
MluCI AATT 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 5 cut(s) 30, 33, 85, 340, 484
MroXI GAANNNNTTC 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 118, 544
MspI CCGG 3 cut(s) 144, 171, 551
MspR9I CCNGG 1 cut(s) 144
Mva1269I GAATGC 1 cut(s) 469
NciI CCSGG 1 cut(s) 144
NdeII GATC 2 cut(s) 319, 579
NheI GCTAGC 1 cut(s) 419
NlaIII CATG 2 cut(s) 73, 588
NlaIV GGNNCC 5 cut(s) 44, 45, 222, 252, 581
NspI RCATGY 1 cut(s) 73
NspV TTCGAA 1 cut(s) 187
PaeI GCATGC 1 cut(s) 73
PctI GAATGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 206
PkrI GCNGC 4 cut(s) 117, 120, 310, 543
PpuMI RGGWCCY 1 cut(s) 43
Psp1406I AACGTT 1 cut(s) 33
Psp5II RGGWCCY 1 cut(s) 43
PspFI CCCAGC 1 cut(s) 465
PspN4I GGNNCC 5 cut(s) 44, 45, 222, 252, 581
PspPI GGNCC 1 cut(s) 43
PspPPI RGGWCCY 1 cut(s) 43
PstNI CAGNNNCTG 1 cut(s) 317
PsuI RGATCY 1 cut(s) 579
PvuII CAGCTG 1 cut(s) 544
RsaI GTAC 4 cut(s) 61, 166, 222, 252
RsaNI GTAC 4 cut(s) 60, 165, 221, 251
SatI GCNGC 4 cut(s) 116, 119, 309, 542
Sau3AI GATC 2 cut(s) 319, 579
Sau96I GGNCC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 144
SfaNI GCATC 1 cut(s) 470
SfuI TTCGAA 1 cut(s) 187
SinI GGWCC 1 cut(s) 43
SphI GCATGC 1 cut(s) 73
Sse9I AATT 1 cut(s) 443
SsiI CCGC 5 cut(s) 118, 126, 309, 345, 519
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 1 cut(s) 142
TaaI ACNGT 2 cut(s) 220, 557
TaiI ACGT 1 cut(s) 36
TaqI TCGA 1 cut(s) 187
TasI AATT 1 cut(s) 443
TatI WGTACW 1 cut(s) 164
TauI GCSGC 2 cut(s) 121, 311
TfiI GAWTC 1 cut(s) 206
TscAI CASTG 1 cut(s) 100
TseI GCWGC 2 cut(s) 115, 541
TspDTI ATGAA 2 cut(s) 489, 549
TspRI CASTG 1 cut(s) 100
VpaK11BI GGWCC 1 cut(s) 43
XceI RCATGY 1 cut(s) 73
XcmI CCANNNNNNNNNTGG 1 cut(s) 573
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.