RLG00000017300

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000074
Physical Location & Seq
Forward (+)
15083832 .. 15089361
5530 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017300

Sequence Viewer

Length: 2385 bp
ATGTGGAGGGCGGAGGGTATTCAGGTAATATGCGGAACGAGATTTTGGAGGCGCTTAGAGGGTCGCTGGGATCTGTTGATATTGAATAAGGTTCTCTTGGTGGGCACAAGTAGTCAGACAATGATCGGCAGGCCAATAGTTCCTGATGCAGCAGTTCATGCAGTTGTTGAAGAGCATGTTAGCATGGACACAGATGAAGGTGGTCTTCGCTACAGCGATCATATTTATCATGAAAGATTACAATTAGACGAAGACGAATCAGAAGATGAAATGTCAATTCGGTTTGGTAAATGCACAGAGGTAACTGCGCGTTCAAAGGAGGCAACGGGGAGTGGAAAACCGGCTGAATCAACAGAACTGAGGAAATCACCTGGATTAGCACAAGAGGACAAACCATTACCTGATGTTGGTGTTGAAAGGCCTGAATTTGTGAAACATACGGGGGCTGCACAGCTTAATGGTAAGCATTTTGAAGACCTTACAATGGACGATATGAAGGCAGTATACTTCCCAACCGTACAGGAAGCAGAGAAGTTCTTGTCATTGTACTCACGAATACTTGGTTTCAGCATACGGAAGGATAGGTTGCAGAAGGAAGGCAATGACATGGTGGTAAGGAGGCAATGGGTATGTTCAAAACAAGGACTGGCAAGTATCAAGTCGAGCAAGCATAAAGGTGTGGATAAGAACAAATTTACAAAGCATCAAACCATTGGGGAGCAGAAGAAATCGAGGTTGAACATAGTACCTAGGAGAAGGAGATACACAAGAGTTAACTGCGAAGCTGCATTCAGTGTTAGATATTGCAAGGAAAGGGAGCTATACCGCGTGACAAAGTTTATACACGAGCACAATCATGAGCTTGCCATGTCCCATGAGGTTCAGTTCTTACGATCAAACCGATATGTTGAAGACAAAGATATTGCTCAGGTTGAGTGCCTTCGTCGCGCACAAGTCCACACTAGGCAGAATGTGAAGGATGCTGCTGCTCAGAAAAGCATTGGAAAAATGATTTTTTCGTCAATGACTATCAGTGAATGGGAGGCTGCTTGGCACTCAATGGTGGTCAGAAATGGGTTGTCGGACAATGCATGGGTTACAAGCTTGTACAACAAACGGGATAGGTGGGCGGAAGCATTCTTCAGAGGGCAGTTTTTTGGAGGAATGTGCAGTACCCAACGCGTGGAAGGCATGCACGCAAAGCTGAAAAAAGAGATTGGGAGGCACACTAGACTATGTGAAGTTATGCCAAAAATGGAGAAGACACTTGGGCGCATGCGGAACCGAGTATTGTATGACAACTTCAGGTCCAAAAATAGTGCACCAGTTTATGAGACGCACATGAAGGGGATCGAGGAAGATGCATGTAGGCTGTTCACGCATGACATCTTCATTATGATCAAGTCACAAATCATGTTCGAGAGAAGGTTTGTTTTAGTGCAAAAGATACCCTTTCCTATCAATGACACAGTGATATTCTACCTTGCCCAATATGACAGGCCTGAACGACGGTGGTGTGTTGAGTTCCATGGTGACCGGGAAAACCCAAAGTGGCAATGCTCTTGCAAACTATTTGAATCTGATGGTATTCCTTGCAGTCACATTTTCTGTGTAATGAAAGATCAGCTTCTGTCCAGATATCCCAAGAGTTTGATAAGCAAACGGTGGACAAAGGCTGTGGGTGATTCAACAGTTGCACCAAAACTGAAGGGCCCCGGTCATGACAAGTCAGCACAGGTGGCCAGGTATTCTGCCCTCATATCAGAAGCAGCCAAAGCGTGCTTAAACTACTCATTTTCAGAAGAAGGATTCAAGGTGGGAATGAATGAATTTGCAAGGCTGGTTCAAACCTCAAGGGAATTCAACACAGTTCCGCCTACGGACACATCAAATGTGCATCTGAGTAGCAATGTTGTGAAGGACCCAAAAGTATCACGGACGAAGGGGATGCCTTCTAATCCTGCAACAAACCCAGAGAATGGGAAGAGCGAGCAGCGGCTTTGCGGAAAATGTTTAATGCCCGGTCACAACAGGCGCACTTGTACAGTTGGTGATGAAGAAGGGGTTCCCACTCGTGCCAATGCAGCATCCGCAGATTCAGAGACTCAGATGATACCTTCAGTCCCTTATTCTGCACATTCAGTACCTCATCCTCCTCCTAATTTATCTGTTTATCAACCCATGGAAGCAGAATTTCAATGGAATGACGCCAGCGGAAATGGTCATTTTGCTCAATTCCCATTCTTCACCGCTTCCCAGGCTTCTAATCCTGCCGTTGGTATCCCGCCTTTTTCATTCAACCTGAACCAGTCCGCCGAAGATGTTGCTGGTACGTTGATGAACGGATTCTATGAACCATACCCACCCACCGGCTGGCAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

795

Amino Acids

90.48

Weight (kDa)

8.97

Isoelectric Point (pI)

46.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 179 - 289 1.1e-13 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 3 cut(s) 1183, 1979, 2373
AccI GTMKAC 1 cut(s) 504
AccII CGCG 4 cut(s) 310, 828, 948, 1182
AclWI GGATC 2 cut(s) 78, 1358
AcoI YGGCCR 1 cut(s) 1740
AcsI RAATTY 5 cut(s) 425, 692, 1829, 1859, 2192
AcuI CTGAAG 4 cut(s) 1126, 1288, 1727, 2103
AcyI GRCGYC 1 cut(s) 2208
AfaI GTAC 8 cut(s) 519, 548, 747, 1109, 1174, 2044, 2145, 2332
AfiI CCNNNNNNNGG 7 cut(s) 407, 484, 1183, 1979, 2276, 2369, 2373
AflIII ACRYGT 1 cut(s) 1180
AjnI CCWGG 3 cut(s) 370, 1742, 2256
AjuI GAANNNNNNNTTGG 2 cut(s) 28, 60
AluBI AGCT 7 cut(s) 454, 785, 820, 862, 1104, 1204, 1627
AluI AGCT 7 cut(s) 454, 785, 820, 862, 1104, 1204, 1627
Alw21I GWGCWC 2 cut(s) 852, 1324
Alw26I GTCTC 2 cut(s) 1328, 2096
Alw44I GTGCAC 1 cut(s) 1320
AlwI GGATC 2 cut(s) 78, 1358
AlwNI CAGNNNCTG 1 cut(s) 1630
AoxI GGCC 5 cut(s) 131, 419, 1499, 1711, 1740
ApaI GGGCCC 1 cut(s) 1715
ApaLI GTGCAC 1 cut(s) 1320
ApoI RAATTY 5 cut(s) 425, 692, 1829, 1859, 2192
Asp700I GAANNNNTTC 2 cut(s) 2064, 2345
AspA2I CCTAGG 1 cut(s) 749
AspLEI GCGC 5 cut(s) 54, 310, 950, 1275, 2037
AspS9I GGNCC 4 cut(s) 1308, 1711, 1712, 1921
AsuC2I CCSGG 3 cut(s) 1538, 1716, 2022
AsuHPI GGTGA 5 cut(s) 360, 1544, 1694, 2063, 2239
AvaII GGWCC 2 cut(s) 1308, 1921
AvrII CCTAGG 1 cut(s) 749
BaeGI GKGCMC 3 cut(s) 107, 1324, 1715
BalI TGGCCA 1 cut(s) 1742
BanII GRGCYC 1 cut(s) 1715
BarI GAAGNNNNNNTAC 4 cut(s) 488, 520, 1286, 1318
BauI CACGAG 2 cut(s) 845, 2073
BbsI GAAGAC 5 cut(s) 197, 258, 480, 918, 1268
Bbv12I GWGCWC 2 cut(s) 852, 1324
BbvI GCAGC 9 cut(s) 161, 433, 772, 970, 973, 1033, 1781, 2005, 2096
BccI CCATC 1 cut(s) 1577
BceAI ACGGC 1 cut(s) 2258
BcgI CGANNNNNNTGC 6 cut(s) 1343, 1377, 1930, 1964, 2306, 2340
BciT130I CCWGG 3 cut(s) 372, 1744, 2258
BciVI GTATCC 1 cut(s) 2291
BclI TGATCA 1 cut(s) 1398
BcnI CCSGG 3 cut(s) 1538, 1716, 2022
BcoDI GTCTC 2 cut(s) 1328, 2096
BfaI CTAG 3 cut(s) 750, 963, 1230
BfmI CTRYAG 1 cut(s) 211
BfoI RGCGCY 1 cut(s) 55
BfuI GTATCC 1 cut(s) 2291
BlnI CCTAGG 1 cut(s) 749
Bme1390I CCNGG 6 cut(s) 372, 1538, 1716, 1744, 2022, 2258
Bme18I GGWCC 2 cut(s) 1308, 1921
BmgT120I GGNCC 4 cut(s) 1308, 1711, 1712, 1921
BmiI GGNNCC 5 cut(s) 1283, 1713, 1714, 1923, 2067
BmrFI CCNGG 6 cut(s) 372, 1538, 1716, 1744, 2022, 2258
BmsI GCATC 7 cut(s) 136, 712, 970, 1351, 1906, 1938, 2096
BpiI GAAGAC 5 cut(s) 197, 258, 480, 918, 1268
Bpu10I CCTNAGC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 1837
BpuMI CCSGG 3 cut(s) 1538, 1716, 2022
BsaHI GRCGYC 1 cut(s) 2208
BsaJI CCNNGG 5 cut(s) 749, 1528, 1714, 2181, 2256
Bsc4I CCNNNNNNNGG 7 cut(s) 407, 484, 1183, 1979, 2276, 2369, 2373
Bse118I RCCGGY 2 cut(s) 340, 2369
Bse1I ACTGG 3 cut(s) 651, 1325, 2308
Bse3DI GCAATG 4 cut(s) 607, 629, 1562, 1915
BseBI CCWGG 3 cut(s) 372, 1744, 2258
BseDI CCNNGG 5 cut(s) 749, 1528, 1714, 2181, 2256
BseGI GGATG 4 cut(s) 985, 1953, 2087, 2149
BseLI CCNNNNNNNGG 7 cut(s) 407, 484, 1183, 1979, 2276, 2369, 2373
BseMI GCAATG 4 cut(s) 607, 629, 1562, 1915
BseMII CTCAG 5 cut(s) 350, 941, 1004, 1892, 2120
BseNI ACTGG 3 cut(s) 651, 1325, 2308
BseRI GAGGAG 1 cut(s) 2145
BseSI GKGCMC 3 cut(s) 107, 1324, 1715
BseXI GCAGC 9 cut(s) 161, 433, 772, 970, 973, 1033, 1781, 2005, 2096
BseYI CCCAGC 1 cut(s) 66
BsgI GTGCAG 3 cut(s) 432, 1189, 2118
Bsh1236I CGCG 4 cut(s) 310, 828, 948, 1182
BshFI GGCC 5 cut(s) 133, 421, 1501, 1713, 1742
BsiHKAI GWGCWC 2 cut(s) 852, 1324
BsiSI CCGG 5 cut(s) 341, 1537, 1716, 2022, 2370
BslFI GGGAC 2 cut(s) 856, 2108
BslI CCNNNNNNNGG 7 cut(s) 407, 484, 1183, 1979, 2276, 2369, 2373
BsmAI GTCTC 2 cut(s) 1328, 2096
BsmBI CGTCTC 1 cut(s) 1328
BsmFI GGGAC 2 cut(s) 856, 2108
BsmI GAATGC 2 cut(s) 788, 1136
BsnI GGCC 5 cut(s) 133, 421, 1501, 1713, 1742
Bsp120I GGGCCC 1 cut(s) 1711
Bsp1286I GDGCHC 4 cut(s) 107, 852, 1324, 1715
Bsp1407I TGTACA 2 cut(s) 1107, 2042
Bsp143I GATC 7 cut(s) 70, 123, 217, 893, 1350, 1398, 1621
Bsp19I CCATGG 2 cut(s) 1528, 2181
BspANI GGCC 5 cut(s) 133, 421, 1501, 1713, 1742
BspCNI CTCAG 5 cut(s) 351, 940, 1003, 1893, 2119
BspFNI CGCG 4 cut(s) 310, 828, 948, 1182
BspHI TCATGA 3 cut(s) 229, 856, 1720
BspLI GGNNCC 5 cut(s) 1283, 1713, 1714, 1923, 2067
BspPI GGATC 2 cut(s) 78, 1358
BspQI GCTCTTC 2 cut(s) 165, 1979
BsrDI GCAATG 4 cut(s) 607, 629, 1562, 1915
BsrFI RCCGGY 2 cut(s) 340, 2369
BsrGI TGTACA 2 cut(s) 1107, 2042
BsrI ACTGG 3 cut(s) 651, 1325, 2308
BssAI RCCGGY 2 cut(s) 340, 2369
BssECI CCNNGG 5 cut(s) 749, 1528, 1714, 2181, 2256
BssMI GATC 7 cut(s) 70, 123, 217, 893, 1350, 1398, 1621
BssNAI GTATAC 1 cut(s) 505
BssNI GRCGYC 1 cut(s) 2208
BssSI CACGAG 2 cut(s) 845, 2073
BssT1I CCWWGG 3 cut(s) 749, 1528, 2181
Bst1107I GTATAC 1 cut(s) 505
Bst2BI CACGAG 2 cut(s) 845, 2073
Bst2UI CCWGG 3 cut(s) 372, 1744, 2258
Bst4CI ACNGT 7 cut(s) 517, 1471, 1512, 1665, 1693, 1870, 2047
Bst6I CTCTTC 2 cut(s) 165, 1979
BstACI GRCGYC 1 cut(s) 2208
BstAPI GCANNNNNTGC 1 cut(s) 158
BstAUI TGTACA 2 cut(s) 1107, 2042
BstDEI CTNAG 6 cut(s) 55, 359, 927, 990, 1901, 2106
BstDSI CCRYGG 2 cut(s) 1528, 2181
BstEII GGTNACC 1 cut(s) 1532
BstF5I GGATG 4 cut(s) 985, 1953, 2087, 2149
BstFNI CGCG 4 cut(s) 310, 828, 948, 1182
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 5 cut(s) 54, 310, 950, 1275, 2037
BstKTI GATC 7 cut(s) 73, 126, 220, 896, 1353, 1401, 1624
BstMAI GTCTC 2 cut(s) 1328, 2096
BstMBI GATC 7 cut(s) 70, 123, 217, 893, 1350, 1398, 1621
BstNI CCWGG 3 cut(s) 372, 1744, 2258
BstNSI RCATGY 4 cut(s) 179, 1195, 1279, 1368
BstPI GGTNACC 1 cut(s) 1532
BstSCI CCNGG 6 cut(s) 370, 1536, 1714, 1742, 2020, 2256
BstSFI CTRYAG 1 cut(s) 211
BstSLI GKGCMC 3 cut(s) 107, 1324, 1715
BstUI CGCG 4 cut(s) 310, 828, 948, 1182
BstV1I GCAGC 9 cut(s) 161, 433, 772, 970, 973, 1033, 1781, 2005, 2096
BstV2I GAAGAC 5 cut(s) 197, 258, 480, 918, 1268
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BstZ17I GTATAC 1 cut(s) 505
BsuI GTATCC 1 cut(s) 2291
BsuRI GGCC 5 cut(s) 133, 421, 1501, 1713, 1742
BtgI CCRYGG 2 cut(s) 1528, 2181
BtsCI GGATG 4 cut(s) 985, 1953, 2087, 2149
BtsIMutI CAGTG 3 cut(s) 799, 1039, 1476
CaiI CAGNNNCTG 1 cut(s) 1630
CciI TCATGA 3 cut(s) 229, 856, 1720
CfoI GCGC 5 cut(s) 54, 310, 950, 1275, 2037
Cfr10I RCCGGY 2 cut(s) 340, 2369
Cfr13I GGNCC 4 cut(s) 1308, 1711, 1712, 1921
CseI GACGC 2 cut(s) 1345, 2216
Csp6I GTAC 8 cut(s) 518, 547, 746, 1108, 1173, 2043, 2144, 2331
CspCI CAANNNNNGTGG 2 cut(s) 1659, 1694
CviQI GTAC 8 cut(s) 518, 547, 746, 1108, 1173, 2043, 2144, 2331
DdeI CTNAG 6 cut(s) 55, 359, 927, 990, 1901, 2106
DpnI GATC 7 cut(s) 72, 125, 219, 895, 1352, 1400, 1623
DpnII GATC 7 cut(s) 70, 123, 217, 893, 1350, 1398, 1621
EaeI YGGCCR 1 cut(s) 1740
Eam1104I CTCTTC 2 cut(s) 165, 1979
EarI CTCTTC 2 cut(s) 165, 1979
EciI GGCGGA 4 cut(s) 26, 1145, 1863, 2302
Eco130I CCWWGG 3 cut(s) 749, 1528, 2181
Eco147I AGGCCT 2 cut(s) 421, 1501
Eco24I GRGCYC 1 cut(s) 1715
Eco32I GATATC 1 cut(s) 1640
Eco47I GGWCC 2 cut(s) 1308, 1921
Eco57I CTGAAG 4 cut(s) 1126, 1288, 1727, 2103
Eco91I GGTNACC 1 cut(s) 1532
EcoO109I RGGNCCY 3 cut(s) 1711, 1712, 1921
EcoO65I GGTNACC 1 cut(s) 1532
EcoRI GAATTC 1 cut(s) 1859
EcoRII CCWGG 3 cut(s) 370, 1742, 2256
EcoRV GATATC 1 cut(s) 1640
EcoT14I CCWWGG 3 cut(s) 749, 1528, 2181
EcoT22I ATGCAT 2 cut(s) 1093, 1366
EcoT38I GRGCYC 1 cut(s) 1715
ErhI CCWWGG 3 cut(s) 749, 1528, 2181
Esp3I CGTCTC 1 cut(s) 1328
FalI AAGNNNNNCTT 8 cut(s) 80, 112, 189, 221, 1436, 1468, 1611, 1643
FaqI GGGAC 2 cut(s) 856, 2108
FauI CCCGC 1 cut(s) 2292
FbaI TGATCA 1 cut(s) 1398
FblI GTMKAC 1 cut(s) 504
FokI GGATG 4 cut(s) 992, 1960, 2074, 2136
FriOI GRGCYC 1 cut(s) 1715
FspBI CTAG 3 cut(s) 750, 963, 1230
GlaI GCGC 5 cut(s) 53, 309, 949, 1274, 2036
GsaI CCCAGC 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 55
HaeIII GGCC 5 cut(s) 133, 421, 1501, 1713, 1742
HapII CCGG 5 cut(s) 341, 1537, 1716, 2022, 2370
HgaI GACGC 2 cut(s) 1345, 2216
HhaI GCGC 5 cut(s) 54, 310, 950, 1275, 2037
Hin1I GRCGYC 1 cut(s) 2208
Hin6I GCGC 5 cut(s) 52, 308, 948, 1273, 2035
HinP1I GCGC 5 cut(s) 52, 308, 948, 1273, 2035
HincII GTYRAC 1 cut(s) 775
HindII GTYRAC 1 cut(s) 775
HindIII AAGCTT 1 cut(s) 1102
HinfI GANTC 8 cut(s) 257, 347, 1577, 1685, 1809, 2096, 2104, 2346
HpaI GTTAAC 1 cut(s) 775
HpaII CCGG 5 cut(s) 341, 1537, 1716, 2022, 2370
HphI GGTGA 5 cut(s) 360, 1544, 1694, 2063, 2239
Hpy166II GTNNAC 6 cut(s) 505, 775, 958, 1322, 1377, 1668
Hpy188III TCNNGA 7 cut(s) 143, 230, 552, 857, 1420, 1635, 1721
Hpy8I GTNNAC 6 cut(s) 505, 775, 958, 1322, 1377, 1668
Hpy99I CGWCG 2 cut(s) 948, 1512
HpyCH4III ACNGT 7 cut(s) 517, 1471, 1512, 1665, 1693, 1870, 2047
HpyCH4IV ACGT 1 cut(s) 2333
HpyF3I CTNAG 6 cut(s) 55, 359, 927, 990, 1901, 2106
HpySE526I ACGT 1 cut(s) 2333
Hsp92I GRCGYC 1 cut(s) 2208
HspAI GCGC 5 cut(s) 52, 308, 948, 1273, 2035
Ksp22I TGATCA 1 cut(s) 1398
KspAI GTTAAC 1 cut(s) 775
Kzo9I GATC 7 cut(s) 70, 123, 217, 893, 1350, 1398, 1621
LguI GCTCTTC 2 cut(s) 165, 1979
LmnI GCTCC 2 cut(s) 718, 817
Lsp1109I GCAGC 9 cut(s) 161, 433, 772, 970, 973, 1033, 1781, 2005, 2096
LweI GCATC 7 cut(s) 136, 712, 970, 1351, 1906, 1938, 2096
MaeI CTAG 3 cut(s) 750, 963, 1230
MaeII ACGT 1 cut(s) 2333
MaeIII GTNAC 7 cut(s) 301, 829, 1096, 1404, 1532, 1598, 2024
MalI GATC 7 cut(s) 72, 125, 219, 895, 1352, 1400, 1623
MboI GATC 7 cut(s) 70, 123, 217, 893, 1350, 1398, 1621
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 4 cut(s) 107, 852, 1324, 1715
MlsI TGGCCA 1 cut(s) 1742
MluCI AATT 9 cut(s) 242, 276, 425, 692, 1829, 1859, 2161, 2192, 2234
MluI ACGCGT 1 cut(s) 1180
MluNI TGGCCA 1 cut(s) 1742
MlyI GAGTC 1 cut(s) 2098
MmeI TCCRAC 1 cut(s) 1062
Mox20I TGGCCA 1 cut(s) 1742
Mph1103I ATGCAT 2 cut(s) 1093, 1366
MroXI GAANNNNTTC 2 cut(s) 2064, 2345
MscI TGGCCA 1 cut(s) 1742
MseI TTAA 4 cut(s) 456, 774, 1784, 2015
MslI CAYNNNNRTG 2 cut(s) 675, 855
Msp20I TGGCCA 1 cut(s) 1742
MspA1I CMGCKG 2 cut(s) 1996, 2214
MspI CCGG 5 cut(s) 341, 1537, 1716, 2022, 2370
MspR9I CCNGG 6 cut(s) 372, 1538, 1716, 1744, 2022, 2258
Mva1269I GAATGC 2 cut(s) 788, 1136
MvaI CCWGG 3 cut(s) 372, 1744, 2258
MvnI CGCG 4 cut(s) 310, 828, 948, 1182
NciI CCSGG 3 cut(s) 1538, 1716, 2022
NcoI CCATGG 2 cut(s) 1528, 2181
NdeII GATC 7 cut(s) 70, 123, 217, 893, 1350, 1398, 1621
NlaIV GGNNCC 5 cut(s) 1283, 1713, 1714, 1923, 2067
NmuCI GTSAC 5 cut(s) 829, 1404, 1532, 1598, 2024
NsiI ATGCAT 2 cut(s) 1093, 1366
NspI RCATGY 4 cut(s) 179, 1195, 1279, 1368
PaeI GCATGC 2 cut(s) 1195, 1279
PagI TCATGA 3 cut(s) 229, 856, 1720
PceI AGGCCT 2 cut(s) 421, 1501
PciSI GCTCTTC 2 cut(s) 165, 1979
PcsI WCGNNNNNNNCGW 1 cut(s) 898
PctI GAATGC 2 cut(s) 788, 1136
PdmI GAANNNNTTC 2 cut(s) 2064, 2345
PfeI GAWTC 7 cut(s) 257, 347, 1577, 1685, 1809, 2096, 2346
PflMI CCANNNNNTGG 3 cut(s) 1183, 1979, 2373
PleI GAGTC 1 cut(s) 2098
PpsI GAGTC 1 cut(s) 2098
PpuMI RGGWCCY 1 cut(s) 1921
Psp5II RGGWCCY 1 cut(s) 1921
Psp6I CCWGG 3 cut(s) 370, 1742, 2256
PspEI GGTNACC 1 cut(s) 1532
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 3 cut(s) 370, 1742, 2256
PspN4I GGNNCC 5 cut(s) 1283, 1713, 1714, 1923, 2067
PspOMI GGGCCC 1 cut(s) 1711
PspPI GGNCC 4 cut(s) 1308, 1711, 1712, 1921
PspPPI RGGWCCY 1 cut(s) 1921
PstNI CAGNNNCTG 1 cut(s) 1630
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 8 cut(s) 519, 548, 747, 1109, 1174, 2044, 2145, 2332
RsaNI GTAC 8 cut(s) 518, 547, 746, 1108, 1173, 2043, 2144, 2331
RseI CAYNNNNRTG 2 cut(s) 675, 855
SapI GCTCTTC 2 cut(s) 165, 1979
SaqAI TTAA 4 cut(s) 456, 774, 1784, 2015
Sau3AI GATC 7 cut(s) 70, 123, 217, 893, 1350, 1398, 1621
Sau96I GGNCC 4 cut(s) 1308, 1711, 1712, 1921
SchI GAGTC 1 cut(s) 2098
ScrFI CCNGG 6 cut(s) 372, 1538, 1716, 1744, 2022, 2258
SduI GDGCHC 4 cut(s) 107, 852, 1324, 1715
SfaNI GCATC 7 cut(s) 136, 712, 970, 1351, 1906, 1938, 2096
SfcI CTRYAG 1 cut(s) 211
SinI GGWCC 2 cut(s) 1308, 1921
SmiMI CAYNNNNRTG 2 cut(s) 675, 855
SmlI CTYRAG 1 cut(s) 1852
SmoI CTYRAG 1 cut(s) 1852
SphI GCATGC 2 cut(s) 1195, 1279
Sse9I AATT 9 cut(s) 242, 276, 425, 692, 1829, 1859, 2161, 2192, 2234
SseBI AGGCCT 2 cut(s) 421, 1501
SspMI CTAG 3 cut(s) 750, 963, 1230
StuI AGGCCT 2 cut(s) 421, 1501
StyD4I CCNGG 6 cut(s) 370, 1536, 1714, 1742, 2020, 2256
StyI CCWWGG 3 cut(s) 749, 1528, 2181
TaaI ACNGT 7 cut(s) 517, 1471, 1512, 1665, 1693, 1870, 2047
TaiI ACGT 1 cut(s) 2336
TaqI TCGA 4 cut(s) 662, 731, 1353, 1419
TasI AATT 9 cut(s) 242, 276, 425, 692, 1829, 1859, 2161, 2192, 2234
TatI WGTACW 3 cut(s) 546, 1107, 2042
TauI GCSGC 1 cut(s) 1999
TfiI GAWTC 7 cut(s) 257, 347, 1577, 1685, 1809, 2096, 2346
Tru1I TTAA 4 cut(s) 456, 774, 1784, 2015
Tru9I TTAA 4 cut(s) 456, 774, 1784, 2015
TscAI CASTG 3 cut(s) 799, 1039, 1476
TseFI GTSAC 5 cut(s) 829, 1404, 1532, 1598, 2024
Tsp45I GTSAC 5 cut(s) 829, 1404, 1532, 1598, 2024
TspGWI ACGGA 4 cut(s) 589, 1895, 1951, 2358
TspRI CASTG 3 cut(s) 799, 1039, 1476
Van91I CCANNNNNTGG 3 cut(s) 1183, 1979, 2373
VneI GTGCAC 1 cut(s) 1320
VpaK11BI GGWCC 2 cut(s) 1308, 1921
XapI RAATTY 5 cut(s) 425, 692, 1829, 1859, 2192
XceI RCATGY 4 cut(s) 179, 1195, 1279, 1368
XcmI CCANNNNNNNNNTGG 1 cut(s) 2370
XmaJI CCTAGG 1 cut(s) 749
XmiI GTMKAC 1 cut(s) 504
XmnI GAANNNNTTC 2 cut(s) 2064, 2345
XspI CTAG 3 cut(s) 750, 963, 1230
Zsp2I ATGCAT 2 cut(s) 1093, 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.