Rmu_sc0005712.1_g000027

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005712.1
OG0000074
Physical Location & Seq
Reverse (-)
166346 .. 168598
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005712.1_g000027.1.cds

Sequence Viewer

Length: 1845 bp
atggacagcagtgaagaagaagggcttcgtttcaccgactacaattatcataaccaagtgttttcagacgaagaggaagatgaacccctagggtttgaaaggggttttggaaatgtggaattgaatgggagaaatttcaaagacatcacatatgaggacgttaaacatctatggtttcgaaccatagatgaagcagagaagttctacaagtattactcccatgtggccggcttcagtacaaggaaagctaaaaaagacatacacaaaaccaagaaaacagtatatcgaaggcagtgggtatgctctaaagccggccgacatatgtcggtacagaagaccaaagaggttggcggttgtggaatgaaggaagcccccaatggtgataagaataaggtgtctaggaagagattgcttagtggaatgaggatatctcgaactgacttccccgcccagttcatggttatgtggtctaatcaccaagatttgttctatgtttctaagtttgtgacgcagcacaatcacgatcttgctatcgcccctgaagttcatttccttcgctcccaccgtaatgttgagagacacgacattgcacaggttgagtccctcctgcaagcacatgtctctattagtcgagcatatgaatttcttgcccaacagtccggtggatatcacaacatgcgattcactgagaaggatctttacaacaagcttcgtccaaagaatatgaaatatgatgcggagggtgatgtagaaactgctgtaagaaggatgaaggcaaagggatcgaccgagaaagaattctggtttgagtacacaattgataaagacaggaggcttgcaaacatgttttggcgggaccatcaatcacttttggactacattgcgtacggggatgtcttgattgtagacagtacttacaagaccaacaagtatagtaagcctatggtgttgttcgtcgggtgcaacaatcaccgggccaccgttgtgtttggtattgcacttgtatgtgatgagaaagaggaaacttacgattgggtatttaatcagttcattgattcaatgcaacaaaaaaggcccttatcagtcattacagacggggacgaagctatgaagaatgctcttgagcgcgtcatgccccaaacccgtcacagactctgtgcctggcacattggtagaaacattggccagaacctaaactgtgaagaagttatggaaggtattgggcaattgatgtttgcgttggtaaccgtacccgattgggagtctagatggcagtctcttattttgaataatgggcttgaaaacaatgcatgggtggcttctctttataataagcgggatcactgggcggaggcttattttagaggccactttttcggcgtttcaagtttcctaatgctgactctaaagtttttttatgtcgggcagtatgatagagtagaacgtcattggtgcgttgagtatcgaggcaacaatggaaacccggagtggttctgctcgtgcaagatgtttgagtccgacgacattccttgtgcgcacctgttctgtgtaatgaaagccgagttggtttcaaatttcccagactgtctcattttgaagcgatggactcgtttagttggggaaacaactttagcccctgcgatatcggtaatgtccaatgataagtctgcccagagtgcaaggtatgctgccctgctaattcaagctgcagaagcctgtttaaatttctccaaatccccagaaagcttcaacgatgcaatgatccaacttcagaccttcaaagctaaatcgatggagttgcggataccaaccttcctctccctacagacagtcccacagttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

614

Amino Acids

71.6

Weight (kDa)

7.59

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1329
Acc16I TGCGCA 1 cut(s) 1536
AccB7I CCANNNNNTGG 1 cut(s) 457
AccI GTMKAC 1 cut(s) 906
AccII CGCG 1 cut(s) 1128
AciI CCGC 7 cut(s) 351, 447, 737, 853, 1336, 1349, 1801
AclWI GGATC 4 cut(s) 702, 790, 1347, 1756
AcoI YGGCCR 3 cut(s) 225, 313, 1183
AcsI RAATTY 5 cut(s) 133, 641, 797, 1573, 1723
AcuI CTGAAG 3 cut(s) 217, 561, 1754
AfaI GTAC 6 cut(s) 238, 330, 812, 887, 913, 1251
AfiI CCNNNNNNNGG 1 cut(s) 457
AflIII ACRYGT 2 cut(s) 616, 843
AjnI CCWGG 1 cut(s) 1160
AjuI GAANNNNNNNTTGG 4 cut(s) 90, 122, 1547, 1579
AleI CACNNNNGTG 2 cut(s) 983, 1840
AluBI AGCT 6 cut(s) 248, 709, 1106, 1706, 1746, 1784
AluI AGCT 6 cut(s) 248, 709, 1106, 1706, 1746, 1784
Alw26I GTCTC 4 cut(s) 571, 625, 1281, 1592
AlwI GGATC 4 cut(s) 702, 790, 1347, 1756
AlwNI CAGNNNCTG 1 cut(s) 1155
AoxI GGCC 6 cut(s) 225, 313, 975, 1073, 1183, 1366
ApeKI GCWGC 3 cut(s) 511, 1688, 1706
ApoI RAATTY 5 cut(s) 133, 641, 797, 1573, 1723
Asp700I GAANNNNTTC 2 cut(s) 24, 797
AspA2I CCTAGG 1 cut(s) 88
AspLEI GCGC 2 cut(s) 1128, 1537
AspS9I GGNCC 3 cut(s) 856, 975, 1074
AsuC2I CCSGG 2 cut(s) 974, 1484
AsuHPI GGTGA 5 cut(s) 25, 392, 467, 755, 962
AsuII TTCGAA 1 cut(s) 178
AvaII GGWCC 1 cut(s) 856
AvrII CCTAGG 1 cut(s) 88
BalI TGGCCA 1 cut(s) 1185
BarI GAAGNNNNNNTAC 2 cut(s) 683, 715
BauI CACGAG 1 cut(s) 1498
BbsI GAAGAC 1 cut(s) 341
BbvI GCAGC 3 cut(s) 523, 1675, 1693
BccI CCATC 4 cut(s) 867, 1263, 1596, 1786
BcgI CGANNNNNNTGC 4 cut(s) 765, 799, 1780, 1814
BciT130I CCWGG 1 cut(s) 1162
BciVI GTATCC 1 cut(s) 1797
BcnI CCSGG 2 cut(s) 974, 1484
BcoDI GTCTC 4 cut(s) 571, 625, 1281, 1592
BfaI CTAG 3 cut(s) 89, 399, 1266
BfmI CTRYAG 2 cut(s) 1707, 1823
BfuI GTATCC 1 cut(s) 1797
BisI GCNGC 3 cut(s) 512, 1689, 1707
BlnI CCTAGG 1 cut(s) 88
BlsI GCNGC 3 cut(s) 513, 1690, 1708
BmcAI AGTACT 1 cut(s) 913
Bme1390I CCNGG 3 cut(s) 974, 1162, 1484
Bme18I GGWCC 1 cut(s) 856
BmgT120I GGNCC 3 cut(s) 856, 975, 1074
BmiI GGNNCC 1 cut(s) 857
BmrFI CCNGG 3 cut(s) 974, 1162, 1484
BmrI ACTGGG 2 cut(s) 445, 1354
BmsI GCATC 2 cut(s) 724, 1744
BmuI ACTGGG 2 cut(s) 445, 1354
BoxI GACNNNNGTC 1 cut(s) 322
BpiI GAAGAC 1 cut(s) 341
BplI GAGNNNNNCTC 2 cut(s) 415, 447
Bpu14I TTCGAA 1 cut(s) 178
BpuEI CTTGAG 1 cut(s) 1142
BpuMI CCSGG 2 cut(s) 974, 1484
Bsa29I ATCGAT 1 cut(s) 1790
BsaJI CCNNGG 1 cut(s) 88
BsaWI WCCGGW 1 cut(s) 659
Bsc4I CCNNNNNNNGG 1 cut(s) 457
Bse118I RCCGGY 2 cut(s) 227, 311
Bse1I ACTGG 2 cut(s) 451, 1349
Bse3DI GCAATG 3 cut(s) 585, 879, 1764
BseBI CCWGG 1 cut(s) 1162
BseCI ATCGAT 1 cut(s) 1790
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 2 cut(s) 774, 898
BseLI CCNNNNNNNGG 1 cut(s) 457
BseMI GCAATG 3 cut(s) 585, 879, 1764
BseMII CTCAG 1 cut(s) 678
BseNI ACTGG 2 cut(s) 451, 1349
BseX3I CGGCCG 1 cut(s) 313
BseXI GCAGC 3 cut(s) 523, 1675, 1693
Bsh1236I CGCG 1 cut(s) 1128
Bsh1285I CGRYCG 2 cut(s) 316, 789
BshFI GGCC 6 cut(s) 227, 315, 977, 1075, 1185, 1368
BshVI ATCGAT 1 cut(s) 1790
BsiEI CGRYCG 2 cut(s) 316, 789
BsiSI CCGG 5 cut(s) 228, 312, 660, 973, 1484
BsiWI CGTACG 1 cut(s) 885
BslFI GGGAC 4 cut(s) 586, 869, 1112, 1817
BslI CCNNNNNNNGG 1 cut(s) 457
BsmAI GTCTC 4 cut(s) 571, 625, 1281, 1592
BsmFI GGGAC 4 cut(s) 586, 869, 1112, 1817
BsmI GAATGC 1 cut(s) 1120
BsnI GGCC 6 cut(s) 227, 315, 977, 1075, 1185, 1368
Bsp119I TTCGAA 1 cut(s) 178
Bsp143I GATC 5 cut(s) 523, 694, 782, 1339, 1761
BspACI CCGC 7 cut(s) 351, 447, 737, 853, 1336, 1349, 1801
BspANI GGCC 6 cut(s) 227, 315, 977, 1075, 1185, 1368
BspCNI CTCAG 1 cut(s) 679
BspDI ATCGAT 1 cut(s) 1790
BspFNI CGCG 1 cut(s) 1128
BspLI GGNNCC 1 cut(s) 857
BspMAI CTGCAG 1 cut(s) 1711
BspPI GGATC 4 cut(s) 702, 790, 1347, 1756
BspT104I TTCGAA 1 cut(s) 178
BsrDI GCAATG 3 cut(s) 585, 879, 1764
BsrFI RCCGGY 2 cut(s) 227, 311
BsrI ACTGG 2 cut(s) 451, 1349
BssAI RCCGGY 2 cut(s) 227, 311
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 5 cut(s) 523, 694, 782, 1339, 1761
BssSI CACGAG 1 cut(s) 1498
BssT1I CCWWGG 1 cut(s) 88
Bst2BI CACGAG 1 cut(s) 1498
Bst2UI CCWGG 1 cut(s) 1162
Bst6I CTCTTC 2 cut(s) 66, 398
BstAPI GCANNNNNTGC 1 cut(s) 1685
BstBI TTCGAA 1 cut(s) 178
BstC8I GCNNGC 4 cut(s) 229, 313, 612, 837
BstDEI CTNAG 3 cut(s) 413, 498, 687
BstEII GGTNACC 1 cut(s) 1243
BstF5I GGATG 2 cut(s) 774, 898
BstFNI CGCG 1 cut(s) 1128
BstHHI GCGC 2 cut(s) 1128, 1537
BstKTI GATC 5 cut(s) 526, 697, 785, 1342, 1764
BstMAI GTCTC 4 cut(s) 571, 625, 1281, 1592
BstMBI GATC 5 cut(s) 523, 694, 782, 1339, 1761
BstMCI CGRYCG 2 cut(s) 316, 789
BstMWI GCNNNNNNNGC 5 cut(s) 1132, 1316, 1676, 1685, 1712
BstNI CCWGG 1 cut(s) 1162
BstNSI RCATGY 3 cut(s) 620, 679, 847
BstPAI GACNNNNGTC 1 cut(s) 322
BstPI GGTNACC 1 cut(s) 1243
BstSCI CCNGG 3 cut(s) 972, 1160, 1482
BstSFI CTRYAG 2 cut(s) 1707, 1823
BstUI CGCG 1 cut(s) 1128
BstV1I GCAGC 3 cut(s) 523, 1675, 1693
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
BstZI CGGCCG 1 cut(s) 313
Bsu15I ATCGAT 1 cut(s) 1790
BsuI GTATCC 1 cut(s) 1797
BsuRI GGCC 6 cut(s) 227, 315, 977, 1075, 1185, 1368
BsuTUI ATCGAT 1 cut(s) 1790
BtgZI GCGATG 1 cut(s) 1615
BtsCI GGATG 2 cut(s) 774, 898
BtsI GCAGTG 2 cut(s) 16, 299
BtsIMutI CAGTG 4 cut(s) 16, 299, 684, 1342
Cac8I GCNNGC 4 cut(s) 229, 313, 612, 837
CaiI CAGNNNCTG 1 cut(s) 1155
CfoI GCGC 2 cut(s) 1128, 1537
Cfr10I RCCGGY 2 cut(s) 227, 311
Cfr13I GGNCC 3 cut(s) 856, 975, 1074
ClaI ATCGAT 1 cut(s) 1790
CseI GACGC 2 cut(s) 517, 1117
Csp6I GTAC 6 cut(s) 237, 329, 811, 886, 912, 1250
CviAII CATG 7 cut(s) 221, 457, 617, 676, 844, 1132, 1311
CviQI GTAC 6 cut(s) 237, 329, 811, 886, 912, 1250
DdeI CTNAG 3 cut(s) 413, 498, 687
DpnI GATC 5 cut(s) 525, 696, 784, 1341, 1763
DpnII GATC 5 cut(s) 523, 694, 782, 1339, 1761
DraI TTTAAA 1 cut(s) 1722
EaeI YGGCCR 3 cut(s) 225, 313, 1183
EagI CGGCCG 1 cut(s) 313
Eam1104I CTCTTC 2 cut(s) 66, 398
EarI CTCTTC 2 cut(s) 66, 398
EciI GGCGGA 1 cut(s) 1364
EclXI CGGCCG 1 cut(s) 313
Eco130I CCWWGG 1 cut(s) 88
Eco32I GATATC 3 cut(s) 429, 668, 1644
Eco47I GGWCC 1 cut(s) 856
Eco52I CGGCCG 1 cut(s) 313
Eco57I CTGAAG 3 cut(s) 217, 561, 1754
Eco91I GGTNACC 1 cut(s) 1243
EcoO109I RGGNCCY 1 cut(s) 1074
EcoO65I GGTNACC 1 cut(s) 1243
EcoRI GAATTC 1 cut(s) 797
EcoRII CCWGG 1 cut(s) 1160
EcoRV GATATC 3 cut(s) 429, 668, 1644
EcoT14I CCWWGG 1 cut(s) 88
EcoT22I ATGCAT 1 cut(s) 1312
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 7 cut(s) 224, 460, 620, 679, 847, 1135, 1314
FalI AAGNNNNNCTT 2 cut(s) 9, 41
FaqI GGGAC 4 cut(s) 586, 869, 1112, 1817
FatI CATG 7 cut(s) 220, 456, 616, 675, 843, 1131, 1310
FauI CCCGC 3 cut(s) 454, 846, 1329
FauNDI CATATG 3 cut(s) 151, 321, 637
FblI GTMKAC 1 cut(s) 906
Fnu4HI GCNGC 3 cut(s) 512, 1689, 1707
FokI GGATG 2 cut(s) 781, 905
Fsp4HI GCNGC 3 cut(s) 512, 1689, 1707
FspAI RTGCGCAY 1 cut(s) 1536
FspBI CTAG 3 cut(s) 89, 399, 1266
FspI TGCGCA 1 cut(s) 1536
GlaI GCGC 2 cut(s) 1127, 1536
GluI GCNGC 3 cut(s) 512, 1689, 1707
HaeIII GGCC 6 cut(s) 227, 315, 977, 1075, 1185, 1368
HapII CCGG 5 cut(s) 228, 312, 660, 973, 1484
HgaI GACGC 2 cut(s) 517, 1117
HhaI GCGC 2 cut(s) 1128, 1537
Hin1II CATG 7 cut(s) 224, 460, 620, 679, 847, 1135, 1314
Hin6I GCGC 2 cut(s) 1126, 1535
HinP1I GCGC 2 cut(s) 1126, 1535
HindIII AAGCTT 2 cut(s) 707, 1744
HinfI GANTC 8 cut(s) 599, 681, 1055, 1152, 1262, 1402, 1514, 1606
HpaII CCGG 5 cut(s) 228, 312, 660, 973, 1484
HphI GGTGA 5 cut(s) 25, 392, 467, 755, 962
Hpy166II GTNNAC 2 cut(s) 813, 907
Hpy188I TCNGA 3 cut(s) 67, 1519, 1773
Hpy188III TCNNGA 5 cut(s) 432, 521, 898, 1121, 1266
Hpy8I GTNNAC 2 cut(s) 813, 907
Hpy99I CGWCG 2 cut(s) 959, 1523
HpyCH4IV ACGT 2 cut(s) 159, 1444
HpyF10VI GCNNNNNNNGC 5 cut(s) 1132, 1316, 1676, 1685, 1712
HpyF3I CTNAG 3 cut(s) 413, 498, 687
HpySE526I ACGT 2 cut(s) 159, 1444
Hsp92II CATG 7 cut(s) 224, 460, 620, 679, 847, 1135, 1314
HspAI GCGC 2 cut(s) 1126, 1535
KroI GCCGGC 2 cut(s) 227, 311
KroNI GCCGGC 2 cut(s) 229, 313
Kzo9I GATC 5 cut(s) 523, 694, 782, 1339, 1761
LmnI GCTCC 1 cut(s) 563
Lsp1109I GCAGC 3 cut(s) 523, 1675, 1693
LweI GCATC 2 cut(s) 724, 1744
MaeI CTAG 3 cut(s) 89, 399, 1266
MaeII ACGT 2 cut(s) 159, 1444
MaeIII GTNAC 3 cut(s) 505, 1145, 1243
MalI GATC 5 cut(s) 525, 696, 784, 1341, 1763
MboI GATC 5 cut(s) 523, 694, 782, 1339, 1761
MboII GAAGA 8 cut(s) 26, 29, 83, 89, 346, 415, 1123, 1214
MfeI CAATTG 2 cut(s) 816, 1226
MflI RGATCY 1 cut(s) 694
MlsI TGGCCA 1 cut(s) 1185
MluNI TGGCCA 1 cut(s) 1185
MlyI GAGTC 6 cut(s) 608, 1146, 1271, 1396, 1523, 1600
MmeI TCCRAC 2 cut(s) 1542, 1789
Mox20I TGGCCA 1 cut(s) 1185
Mph1103I ATGCAT 1 cut(s) 1312
MroNI GCCGGC 2 cut(s) 227, 311
MroXI GAANNNNTTC 2 cut(s) 24, 797
MscI TGGCCA 1 cut(s) 1185
MseI TTAA 3 cut(s) 162, 1041, 1721
MslI CAYNNNNRTG 5 cut(s) 461, 567, 983, 1003, 1840
Msp20I TGGCCA 1 cut(s) 1185
MspI CCGG 5 cut(s) 228, 312, 660, 973, 1484
MspR9I CCNGG 3 cut(s) 974, 1162, 1484
MunI CAATTG 2 cut(s) 816, 1226
Mva1269I GAATGC 1 cut(s) 1120
MvaI CCWGG 1 cut(s) 1162
MvnI CGCG 1 cut(s) 1128
MwoI GCNNNNNNNGC 5 cut(s) 1132, 1316, 1676, 1685, 1712
NaeI GCCGGC 2 cut(s) 229, 313
NciI CCSGG 2 cut(s) 974, 1484
NdeI CATATG 3 cut(s) 151, 321, 637
NdeII GATC 5 cut(s) 523, 694, 782, 1339, 1761
NgoMIV GCCGGC 2 cut(s) 227, 311
NlaIII CATG 7 cut(s) 224, 460, 620, 679, 847, 1135, 1314
NlaIV GGNNCC 1 cut(s) 857
NmeAIII GCCGAG 1 cut(s) 1585
NmuCI GTSAC 2 cut(s) 505, 1145
NsbI TGCGCA 1 cut(s) 1536
NsiI ATGCAT 1 cut(s) 1312
NspI RCATGY 3 cut(s) 620, 679, 847
NspV TTCGAA 1 cut(s) 178
OliI CACNNNNGTG 2 cut(s) 983, 1840
PciI ACATGT 2 cut(s) 616, 843
PcsI WCGNNNNNNNCGW 1 cut(s) 562
PctI GAATGC 1 cut(s) 1120
PdiI GCCGGC 2 cut(s) 229, 313
PdmI GAANNNNTTC 2 cut(s) 24, 797
PfeI GAWTC 2 cut(s) 681, 1055
Pfl23II CGTACG 1 cut(s) 885
PflMI CCANNNNNTGG 1 cut(s) 457
PkrI GCNGC 3 cut(s) 513, 1690, 1708
PleI GAGTC 6 cut(s) 607, 1146, 1270, 1396, 1522, 1600
PpsI GAGTC 6 cut(s) 607, 1146, 1270, 1396, 1522, 1600
PscI ACATGT 2 cut(s) 616, 843
PshAI GACNNNNGTC 1 cut(s) 322
PsiI TTATAA 1 cut(s) 1329
Psp6I CCWGG 1 cut(s) 1160
PspEI GGTNACC 1 cut(s) 1243
PspGI CCWGG 1 cut(s) 1160
PspLI CGTACG 1 cut(s) 885
PspN4I GGNNCC 1 cut(s) 857
PspPI GGNCC 3 cut(s) 856, 975, 1074
PstI CTGCAG 1 cut(s) 1711
PstNI CAGNNNCTG 1 cut(s) 1155
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 6 cut(s) 238, 330, 812, 887, 913, 1251
RsaNI GTAC 6 cut(s) 237, 329, 811, 886, 912, 1250
RseI CAYNNNNRTG 5 cut(s) 461, 567, 983, 1003, 1840
SaqAI TTAA 3 cut(s) 162, 1041, 1721
SatI GCNGC 3 cut(s) 512, 1689, 1707
Sau3AI GATC 5 cut(s) 523, 694, 782, 1339, 1761
Sau96I GGNCC 3 cut(s) 856, 975, 1074
ScaI AGTACT 1 cut(s) 913
SchI GAGTC 6 cut(s) 608, 1146, 1271, 1396, 1523, 1600
ScrFI CCNGG 3 cut(s) 974, 1162, 1484
SfaNI GCATC 2 cut(s) 724, 1744
SfcI CTRYAG 2 cut(s) 1707, 1823
SfuI TTCGAA 1 cut(s) 178
SinI GGWCC 1 cut(s) 856
SmiMI CAYNNNNRTG 5 cut(s) 461, 567, 983, 1003, 1840
SmlI CTYRAG 1 cut(s) 1121
SmoI CTYRAG 1 cut(s) 1121
SsiI CCGC 7 cut(s) 351, 447, 737, 853, 1336, 1349, 1801
SspMI CTAG 3 cut(s) 89, 399, 1266
StyD4I CCNGG 3 cut(s) 972, 1160, 1482
StyI CCWWGG 1 cut(s) 88
TaiI ACGT 2 cut(s) 162, 1447
TaqI TCGA 7 cut(s) 178, 286, 433, 631, 785, 1465, 1790
TaqII GACCGA 1 cut(s) 803
TatI WGTACW 3 cut(s) 236, 810, 911
TfiI GAWTC 2 cut(s) 681, 1055
Tru1I TTAA 3 cut(s) 162, 1041, 1721
Tru9I TTAA 3 cut(s) 162, 1041, 1721
TscAI CASTG 4 cut(s) 16, 299, 691, 1349
TseFI GTSAC 2 cut(s) 505, 1145
TseI GCWGC 3 cut(s) 511, 1688, 1706
Tsp45I GTSAC 2 cut(s) 505, 1145
TspRI CASTG 4 cut(s) 16, 299, 691, 1349
Van91I CCANNNNNTGG 1 cut(s) 457
VpaK11BI GGWCC 1 cut(s) 856
XapI RAATTY 5 cut(s) 133, 641, 797, 1573, 1723
XbaI TCTAGA 1 cut(s) 1265
XceI RCATGY 3 cut(s) 620, 679, 847
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XmaJI CCTAGG 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 906
XmnI GAANNNNTTC 2 cut(s) 24, 797
XspI CTAG 3 cut(s) 89, 399, 1266
ZrmI AGTACT 1 cut(s) 913
Zsp2I ATGCAT 1 cut(s) 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.