Rh3CG308000

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000074
Physical Location & Seq
Reverse (-)
32235663 .. 32238353
2691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG308000.1

Sequence Viewer

Length: 1821 bp
ATGAATATGAGGGCAATCCGGGATCCCCACTTTTATTGTATATACAGTGGTGATGAGAATGGTAGGCTAGCAAACATGTTCTGGAGAGACGGACAATCTTTATCTGATTTCACAAATTTTGGTGACGTACTTATATTCGATAGCACTTACAAGACCAATATCTACAGCAAGCCACTAGCTGTATTTGTTGGGTCCAACAATCATAGAGCTACTGTTCTATTCGGCTGTGCATTGCTGGTGGATGAAACAGAGGAAACATATAATTGGGTTTTGAACAGTTTCTTGACCTCAATGCATGGAAAAAAACCCATGTCTATAATCACTGATGGAGATGATGCAATGCGTAATGCGGTAAGTAATCTGCTACCTGAGGCCCGCCACCGTCTTTGTGCGTGGCACATAGGAAAAAATGTGTGTCGACATTTGAAAGACGAAGACACACGGAAAGAGTTTTTCCATTTGATATTTGCTGGCCTCACCGTTGATGAATGGGAATCTGCTTGGCAATACTTTGTTGCGATGAACCGGCTGGAAAATGACAAATGGGTTACCAGTATGTACAATAAGCGTGAACGGTGGGCAGAGGCCTTCTTCCGAGATCAGTTTTTTGCTGGTATATGCAGCACCCAGCGATGTGAGGGGATGCATAGAAATTTGAAAGGAGGTATAGGGCGTTATATGAGGTTGTGCGAGGTGTTGCCACGTATGGAGAAGACTATACAGCGTATAAGGAATCGGGTTTTGGAGGATGATTTCCGTTCAGAACATTGCGAACCAGTGTATGGCACCCACTTGCGATGTTTGGAAGAGCAGATTGGTAAAATTTTCACTCATGACATCTTCCTCTTAATCAAGGATCAAATTAAGTTTGAGTCCAAGTTTGTTATTGGGCGTAGAGAGGTTCATCTCCACAATAGTTCTGAGTCCATTTCATTGACCCAATATGGTAAGCCGGAGCAGCGTTGGACTGTGTTCTACCAACCTGATGAGAGTAATCCCAGATTTGTATGTTCCTGCAAACTCTTTGAGTCTGATGGGATTCCATGTTGCCACATCTTTGTAGTCATGAAATGTGAGATGATTACAATGTTCCCAGAATCATTAGTAAATGAAAGATGGAAAAAAGATGCAGGTGTGAAGAGGAAATCAACCCTCTCAGGTTCAGCAAATGACCAATCTACACGGATTGCAAGGTACGGCGAATTGATGGGAATTTGTGCTAAAATCTGCCATCTTGCTTCCTATAGTGAGGAGGGGTATGATGAGACAAGGGAAGCTCTTCGGCAGATGACCTTAAAATCTAAAAAATACAAACCTGCAACAGAGGCACCCATTGATGTTCCTTTTGAAGGTCTCCACCCTAATGTGATCAGAGACCCCGTTGTTTGTAGGACAAAAGGCGATAAGTCTAAGGCCGGCATTCCCGAGGATGAGGAAAACTACAAGTCTAAAGTAGGCAAGGGCTGCAAAATTTTTCATATGAGTGGGCACAACCGGAGAACTTGCCTTCGGAATAGTTCAGCAAATGAAGGAAAGCAAGCTACACAGCAAACTAAAGTGAAAGGATGTAGTAAGCAAGTTGGTGGAAACAAGTCAGACAATAGTGCTTCTGAATATGAGACTAGTGATAACAGTGATTGTGGAAAAGAATCTAACAACATGCCTAAAAGTGGTGCTACCAGTTTGATTCATAATCTGGAAGAGGCTCGCCCACTTGAGTTTTTTACTGGTTATGAGAAAAGCAACAATTTGGAAGGGGACTCTACAAGTTCTGGACTCCCTGATTTCTTTGAACACTTTAGGCCCTTCTATAATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

606

Amino Acids

69.65

Weight (kDa)

7.25

Isoelectric Point (pI)

38.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 19 - 126 5.9e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 43 - 137 4.2e-28 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1121
Acc36I ACCTGC 2 cut(s) 1121, 1324
AccB1I GGYRCC 2 cut(s) 785, 1327
AccB7I CCANNNNNTGG 1 cut(s) 782
AccI GTMKAC 1 cut(s) 418
AciI CCGC 2 cut(s) 350, 376
AclWI GGATC 3 cut(s) 17, 30, 864
AcsI RAATTY 5 cut(s) 115, 652, 822, 1212, 1470
AfaI GTAC 3 cut(s) 129, 560, 1196
AfiI CCNNNNNNNGG 3 cut(s) 782, 1349, 1670
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 5 cut(s) 274, 427, 658, 1349, 1793
AhlI ACTAGT 1 cut(s) 1622
AjuI GAANNNNNNNTTGG 4 cut(s) 725, 757, 798, 830
AluBI AGCT 4 cut(s) 179, 209, 1277, 1541
AluI AGCT 4 cut(s) 179, 209, 1277, 1541
Alw26I GTCTC 5 cut(s) 81, 1259, 1358, 1368, 1613
AlwI GGATC 3 cut(s) 17, 30, 864
Ama87I CYCGRG 1 cut(s) 1424
AoxI GGCC 5 cut(s) 372, 472, 585, 1413, 1802
ApeKI GCWGC 3 cut(s) 621, 958, 1464
ApoI RAATTY 5 cut(s) 115, 652, 822, 1212, 1470
Asp700I GAANNNNTTC 2 cut(s) 278, 1278
AspS9I GGNCC 3 cut(s) 192, 373, 1803
AsuC2I CCSGG 1 cut(s) 20
AsuHPI GGTGA 3 cut(s) 62, 134, 469
AsuNHI GCTAGC 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 1424
AvaII GGWCC 1 cut(s) 192
AxyI CCTNAGG 1 cut(s) 369
BaeGI GKGCMC 1 cut(s) 1491
BamHI GGATCC 1 cut(s) 22
BanI GGYRCC 2 cut(s) 785, 1327
BbsI GAAGAC 2 cut(s) 441, 719
BbvI GCAGC 3 cut(s) 633, 970, 1451
BccI CCATC 5 cut(s) 320, 1028, 1110, 1201, 1239
BceAI ACGGC 1 cut(s) 1213
BclI TGATCA 1 cut(s) 1368
BcnI CCSGG 1 cut(s) 20
BcoDI GTCTC 5 cut(s) 81, 1259, 1358, 1368, 1613
BcuI ACTAGT 1 cut(s) 1622
BfaI CTAG 3 cut(s) 68, 176, 1623
BfmI CTRYAG 2 cut(s) 163, 1243
BfuAI ACCTGC 2 cut(s) 1121, 1324
BisI GCNGC 3 cut(s) 622, 959, 1465
BlsI GCNGC 3 cut(s) 623, 960, 1466
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 192
BmeT110I CYCGRG 1 cut(s) 1424
BmgT120I GGNCC 3 cut(s) 192, 373, 1803
BmiI GGNNCC 4 cut(s) 24, 193, 787, 1329
BmrFI CCNGG 1 cut(s) 20
BmsI GCATC 3 cut(s) 325, 633, 1117
BmtI GCTAGC 1 cut(s) 71
BpiI GAAGAC 2 cut(s) 441, 719
BpmI CTGGAG 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 1736
BpuMI CCSGG 1 cut(s) 20
BsaAI YACGTR 1 cut(s) 704
BsaI GGTCTC 2 cut(s) 1358, 1368
BsaJI CCNNGG 1 cut(s) 1425
BsaWI WCCGGW 1 cut(s) 1494
Bsc4I CCNNNNNNNGG 3 cut(s) 782, 1349, 1670
Bse118I RCCGGY 2 cut(s) 525, 1415
Bse1I ACTGG 4 cut(s) 552, 776, 1680, 1732
Bse21I CCTNAGG 1 cut(s) 369
Bse3DI GCAATG 3 cut(s) 230, 345, 766
BseDI CCNNGG 1 cut(s) 1425
BseGI GGATG 5 cut(s) 247, 648, 754, 1435, 1571
BseLI CCNNNNNNNGG 3 cut(s) 782, 1349, 1670
BseMI GCAATG 3 cut(s) 230, 345, 766
BseMII CTCAG 3 cut(s) 360, 912, 1170
BseNI ACTGG 4 cut(s) 552, 776, 1680, 1732
BseRI GAGGAG 1 cut(s) 1265
BseSI GKGCMC 1 cut(s) 1491
BseXI GCAGC 3 cut(s) 633, 970, 1451
BseYI CCCAGC 1 cut(s) 627
BshFI GGCC 5 cut(s) 374, 474, 587, 1415, 1804
BshNI GGYRCC 2 cut(s) 785, 1327
BsiHKCI CYCGRG 1 cut(s) 1424
BsiSI CCGG 5 cut(s) 19, 526, 953, 1416, 1495
BslFI GGGAC 1 cut(s) 1772
BslI CCNNNNNNNGG 3 cut(s) 782, 1349, 1670
BsmAI GTCTC 5 cut(s) 81, 1259, 1358, 1368, 1613
BsmBI CGTCTC 1 cut(s) 81
BsmFI GGGAC 1 cut(s) 1772
BsmI GAATGC 1 cut(s) 1419
BsnI GGCC 5 cut(s) 374, 474, 587, 1415, 1804
Bso31I GGTCTC 2 cut(s) 1358, 1368
BsoBI CYCGRG 1 cut(s) 1424
Bsp1286I GDGCHC 1 cut(s) 1491
Bsp1407I TGTACA 1 cut(s) 558
Bsp143I GATC 4 cut(s) 22, 598, 856, 1368
BspACI CCGC 2 cut(s) 350, 376
BspANI GGCC 5 cut(s) 374, 474, 587, 1415, 1804
BspCNI CTCAG 3 cut(s) 361, 913, 1169
BspHI TCATGA 2 cut(s) 832, 1065
BspLI GGNNCC 4 cut(s) 24, 193, 787, 1329
BspMI ACCTGC 2 cut(s) 1121, 1324
BspOI GCTAGC 1 cut(s) 71
BspPI GGATC 3 cut(s) 17, 30, 864
BspQI GCTCTTC 2 cut(s) 801, 1284
BspT107I GGYRCC 2 cut(s) 785, 1327
BspTNI GGTCTC 2 cut(s) 1358, 1368
BsrDI GCAATG 3 cut(s) 230, 345, 766
BsrFI RCCGGY 2 cut(s) 525, 1415
BsrGI TGTACA 1 cut(s) 558
BsrI ACTGG 4 cut(s) 552, 776, 1680, 1732
BssAI RCCGGY 2 cut(s) 525, 1415
BssECI CCNNGG 1 cut(s) 1425
BssMI GATC 4 cut(s) 22, 598, 856, 1368
Bst4CI ACNGT 8 cut(s) 47, 214, 278, 383, 481, 576, 970, 1634
Bst6I CTCTTC 4 cut(s) 801, 1133, 1284, 1695
BstAPI GCANNNNNTGC 1 cut(s) 1464
BstAUI TGTACA 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 704
BstC8I GCNNGC 7 cut(s) 69, 170, 376, 472, 1417, 1539, 1708
BstDEI CTNAG 4 cut(s) 369, 921, 1156, 1410
BstEII GGTNACC 1 cut(s) 547
BstENI CCTNNNNNAGG 1 cut(s) 1347
BstF5I GGATG 5 cut(s) 247, 648, 754, 1435, 1571
BstKTI GATC 4 cut(s) 25, 601, 859, 1371
BstMAI GTCTC 5 cut(s) 81, 1259, 1358, 1368, 1613
BstMBI GATC 4 cut(s) 22, 598, 856, 1368
BstMWI GCNNNNNNNGC 3 cut(s) 958, 1325, 1464
BstNSI RCATGY 2 cut(s) 79, 1663
BstPI GGTNACC 1 cut(s) 547
BstSCI CCNGG 1 cut(s) 18
BstSFI CTRYAG 2 cut(s) 163, 1243
BstSLI GKGCMC 1 cut(s) 1491
BstV1I GCAGC 3 cut(s) 633, 970, 1451
BstV2I GAAGAC 2 cut(s) 441, 719
BstX2I RGATCY 1 cut(s) 22
BstYI RGATCY 1 cut(s) 22
Bsu36I CCTNAGG 1 cut(s) 369
BsuRI GGCC 5 cut(s) 374, 474, 587, 1415, 1804
BtgZI GCGATG 3 cut(s) 533, 646, 811
BtsCI GGATG 5 cut(s) 247, 648, 754, 1435, 1571
BtsIMutI CAGTG 4 cut(s) 52, 321, 783, 1639
BveI ACCTGC 2 cut(s) 1121, 1324
Cac8I GCNNGC 7 cut(s) 69, 170, 376, 472, 1417, 1539, 1708
CciI TCATGA 2 cut(s) 832, 1065
Cfr10I RCCGGY 2 cut(s) 525, 1415
Cfr13I GGNCC 3 cut(s) 192, 373, 1803
Csp6I GTAC 3 cut(s) 128, 559, 1195
CspCI CAANNNNNGTGG 4 cut(s) 17, 52, 368, 403
CviAII CATG 7 cut(s) 76, 296, 310, 833, 1044, 1066, 1660
CviQI GTAC 3 cut(s) 128, 559, 1195
DdeI CTNAG 4 cut(s) 369, 921, 1156, 1410
DpnI GATC 4 cut(s) 24, 600, 858, 1370
DpnII GATC 4 cut(s) 22, 598, 856, 1368
Eam1104I CTCTTC 4 cut(s) 801, 1133, 1284, 1695
EarI CTCTTC 4 cut(s) 801, 1133, 1284, 1695
Eco147I AGGCCT 1 cut(s) 587
Eco31I GGTCTC 2 cut(s) 1358, 1368
Eco47I GGWCC 1 cut(s) 192
Eco81I CCTNAGG 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 1424
Eco91I GGTNACC 1 cut(s) 547
EcoNI CCTNNNNNAGG 1 cut(s) 1347
EcoO109I RGGNCCY 1 cut(s) 1803
EcoO65I GGTNACC 1 cut(s) 547
EcoT22I ATGCAT 2 cut(s) 297, 648
Esp3I CGTCTC 1 cut(s) 81
FaeI CATG 7 cut(s) 79, 299, 313, 836, 1047, 1069, 1663
FaqI GGGAC 1 cut(s) 1772
FatI CATG 7 cut(s) 75, 295, 309, 832, 1043, 1065, 1659
FauI CCCGC 1 cut(s) 383
FauNDI CATATG 1 cut(s) 1479
FbaI TGATCA 1 cut(s) 1368
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 622, 959, 1465
FokI GGATG 5 cut(s) 254, 655, 761, 1442, 1578
Fsp4HI GCNGC 3 cut(s) 622, 959, 1465
FspBI CTAG 3 cut(s) 68, 176, 1623
GluI GCNGC 3 cut(s) 622, 959, 1465
GsaI CCCAGC 1 cut(s) 631
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 5 cut(s) 374, 474, 587, 1415, 1804
HapII CCGG 5 cut(s) 19, 526, 953, 1416, 1495
Hin1II CATG 7 cut(s) 79, 299, 313, 836, 1047, 1069, 1663
HincII GTYRAC 1 cut(s) 419
HindII GTYRAC 1 cut(s) 419
HpaII CCGG 5 cut(s) 19, 526, 953, 1416, 1495
HphI GGTGA 3 cut(s) 62, 134, 469
Hpy166II GTNNAC 2 cut(s) 419, 572
Hpy188I TCNGA 9 cut(s) 106, 596, 763, 922, 1033, 1373, 1512, 1597, 1612
Hpy188III TCNNGA 7 cut(s) 82, 283, 833, 1066, 1424, 1697, 1773
Hpy8I GTNNAC 2 cut(s) 419, 572
HpyAV CCTTC 6 cut(s) 598, 1343, 1517, 1523, 1748, 1816
HpyCH4III ACNGT 8 cut(s) 47, 214, 278, 383, 481, 576, 970, 1634
HpyCH4IV ACGT 2 cut(s) 126, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 958, 1325, 1464
HpyF3I CTNAG 4 cut(s) 369, 921, 1156, 1410
HpySE526I ACGT 2 cut(s) 126, 703
Hsp92II CATG 7 cut(s) 79, 299, 313, 836, 1047, 1069, 1663
KroI GCCGGC 1 cut(s) 1415
KroNI GCCGGC 1 cut(s) 1417
Ksp22I TGATCA 1 cut(s) 1368
Kzo9I GATC 4 cut(s) 22, 598, 856, 1368
LguI GCTCTTC 2 cut(s) 801, 1284
LmnI GCTCC 1 cut(s) 955
Lsp1109I GCAGC 3 cut(s) 633, 970, 1451
LweI GCATC 3 cut(s) 325, 633, 1117
MaeI CTAG 3 cut(s) 68, 176, 1623
MaeII ACGT 2 cut(s) 126, 703
MaeIII GTNAC 2 cut(s) 122, 547
MalI GATC 4 cut(s) 24, 600, 858, 1370
MboI GATC 4 cut(s) 22, 598, 856, 1368
MboII GAAGA 8 cut(s) 446, 583, 724, 818, 832, 1150, 1271, 1712
MflI RGATCY 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 1491
MluCI AATT 9 cut(s) 115, 262, 652, 822, 861, 1202, 1212, 1470, 1747
MlyI GAGTC 5 cut(s) 881, 932, 1037, 1754, 1770
MmeI TCCRAC 2 cut(s) 219, 944
Mph1103I ATGCAT 2 cut(s) 297, 648
MroNI GCCGGC 1 cut(s) 1415
MroXI GAANNNNTTC 2 cut(s) 278, 1278
MseI TTAA 3 cut(s) 848, 864, 1295
MslI CAYNNNNRTG 2 cut(s) 1362, 1482
MspI CCGG 5 cut(s) 19, 526, 953, 1416, 1495
MspR9I CCNGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 1419
MwoI GCNNNNNNNGC 3 cut(s) 958, 1325, 1464
NaeI GCCGGC 1 cut(s) 1417
NciI CCSGG 1 cut(s) 20
NdeI CATATG 1 cut(s) 1479
NdeII GATC 4 cut(s) 22, 598, 856, 1368
NgoMIV GCCGGC 1 cut(s) 1415
NheI GCTAGC 1 cut(s) 67
NlaIII CATG 7 cut(s) 79, 299, 313, 836, 1047, 1069, 1663
NlaIV GGNNCC 4 cut(s) 24, 193, 787, 1329
NmuCI GTSAC 1 cut(s) 122
NsiI ATGCAT 2 cut(s) 297, 648
NspI RCATGY 2 cut(s) 79, 1663
PagI TCATGA 2 cut(s) 832, 1065
PaqCI CACCTGC 1 cut(s) 1121
PceI AGGCCT 1 cut(s) 587
PciI ACATGT 1 cut(s) 75
PciSI GCTCTTC 2 cut(s) 801, 1284
PctI GAATGC 1 cut(s) 1419
PdiI GCCGGC 1 cut(s) 1417
PdmI GAANNNNTTC 2 cut(s) 278, 1278
PfeI GAWTC 6 cut(s) 494, 733, 1039, 1097, 1649, 1687
PflMI CCANNNNNTGG 1 cut(s) 782
PfoI TCCNGGA 1 cut(s) 18
PkrI GCNGC 3 cut(s) 623, 960, 1466
PleI GAGTC 5 cut(s) 880, 931, 1036, 1754, 1770
PpsI GAGTC 5 cut(s) 880, 931, 1036, 1754, 1770
Ppu21I YACGTR 1 cut(s) 704
PscI ACATGT 1 cut(s) 75
PspEI GGTNACC 1 cut(s) 547
PspFI CCCAGC 1 cut(s) 627
PspN4I GGNNCC 4 cut(s) 24, 193, 787, 1329
PspPI GGNCC 3 cut(s) 192, 373, 1803
PsuI RGATCY 1 cut(s) 22
RsaI GTAC 3 cut(s) 129, 560, 1196
RsaNI GTAC 3 cut(s) 128, 559, 1195
RseI CAYNNNNRTG 2 cut(s) 1362, 1482
SalI GTCGAC 1 cut(s) 417
SapI GCTCTTC 2 cut(s) 801, 1284
SaqAI TTAA 3 cut(s) 848, 864, 1295
SatI GCNGC 3 cut(s) 622, 959, 1465
Sau3AI GATC 4 cut(s) 22, 598, 856, 1368
Sau96I GGNCC 3 cut(s) 192, 373, 1803
SchI GAGTC 5 cut(s) 881, 932, 1037, 1754, 1770
ScrFI CCNGG 1 cut(s) 20
SduI GDGCHC 1 cut(s) 1491
SfaNI GCATC 3 cut(s) 325, 633, 1117
SfcI CTRYAG 2 cut(s) 163, 1243
SinI GGWCC 1 cut(s) 192
SmiMI CAYNNNNRTG 2 cut(s) 1362, 1482
SmlI CTYRAG 1 cut(s) 1715
SmoI CTYRAG 1 cut(s) 1715
SpeI ACTAGT 1 cut(s) 1622
Sse9I AATT 9 cut(s) 115, 262, 652, 822, 861, 1202, 1212, 1470, 1747
SseBI AGGCCT 1 cut(s) 587
SsiI CCGC 2 cut(s) 350, 376
SspMI CTAG 3 cut(s) 68, 176, 1623
StuI AGGCCT 1 cut(s) 587
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 8 cut(s) 47, 214, 278, 383, 481, 576, 970, 1634
TaiI ACGT 2 cut(s) 129, 706
TaqI TCGA 2 cut(s) 138, 418
TasI AATT 9 cut(s) 115, 262, 652, 822, 861, 1202, 1212, 1470, 1747
TatI WGTACW 1 cut(s) 558
TfiI GAWTC 6 cut(s) 494, 733, 1039, 1097, 1649, 1687
Tru1I TTAA 3 cut(s) 848, 864, 1295
Tru9I TTAA 3 cut(s) 848, 864, 1295
TscAI CASTG 4 cut(s) 52, 328, 783, 1639
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 3 cut(s) 621, 958, 1464
Tsp45I GTSAC 1 cut(s) 122
TspGWI ACGGA 4 cut(s) 105, 457, 746, 1198
TspRI CASTG 4 cut(s) 52, 328, 783, 1639
Van91I CCANNNNNTGG 1 cut(s) 782
VpaK11BI GGWCC 1 cut(s) 192
XagI CCTNNNNNAGG 1 cut(s) 1347
XapI RAATTY 5 cut(s) 115, 652, 822, 1212, 1470
XceI RCATGY 2 cut(s) 79, 1663
XmiI GTMKAC 1 cut(s) 418
XmnI GAANNNNTTC 2 cut(s) 278, 1278
XspI CTAG 3 cut(s) 68, 176, 1623
Zsp2I ATGCAT 2 cut(s) 297, 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.