FvH4_2g14572

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000074
Physical Location & Seq
Forward (+)
12803050 .. 12806018
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14572.t1

Sequence Viewer

Length: 630 bp
ATGGGCTGGCCGCTGGAGGCGGCGAGTGGATCGTCGACGAGGGAGGCGATGGAGTTAGCGGAGGAGTCGGAGGGGATGGGCGACGGGGGTAGTGGTGGTGGAGAGAATGCAGCGGTGGAGAGCGGAAAGAAGGGATCCGGGAATAGTCGAATATTAGGAACAGCACTGCCACATTCAACTGACTTTGTCAACTACTCGATCTCCAAAGTCGTTGGTTTCATGGATGATAATGGCTTGCGGTTTTCCGAATCTAATTATTACGATTCAGTGGAAAATGAAGAGGTCCAATCTGAGGAAGAAGATTTGGAGGATGAACCGGAAGAGACTCTTGTATCAAACTCGGTTGATACGCAAAACTGCTTACACTATAAGGGGAAGCAGTATGAAGATCTTAGATATGAAGATTTGAAAGAAGTTGACTTCGAATCTGTGGAAGAAGTGGACACATTCTATTCTTTTTATTCACTTGCAATGGGTTTTAGCTTTCGAAAGGAGAAGTTGGACAAAAATATATATGGGATTGTGGTCAGAAGGCAGTTGGTTTGTTCTAAGGAAGGCGCTAGAAAGAAAAAGGGTCCTCCTAAGGATAATCCAGTATCACACAACCTAGGCCGAGAACATCCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

210

Amino Acids

23.22

Weight (kDa)

4.58

Isoelectric Point (pI)

45.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 149 - 192 2e-06 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 35
AciI CCGC 6 cut(s) 11, 20, 59, 113, 123, 238
AclWI GGATC 3 cut(s) 37, 129, 142
AcoI YGGCCR 1 cut(s) 8
AfiI CCNNNNNNNGG 1 cut(s) 292
AgsI TTSAA 2 cut(s) 177, 409
AluBI AGCT 1 cut(s) 483
AluI AGCT 1 cut(s) 483
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 3 cut(s) 37, 129, 142
AoxI GGCC 2 cut(s) 8, 610
ApeKI GCWGC 1 cut(s) 110
AspA2I CCTAGG 1 cut(s) 607
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 2 cut(s) 283, 575
AsuC2I CCSGG 1 cut(s) 139
AsuII TTCGAA 2 cut(s) 423, 487
AvaII GGWCC 2 cut(s) 283, 575
AvrII CCTAGG 1 cut(s) 607
AxyI CCTNAGG 1 cut(s) 582
BaeI ACNNNNGTAYC 2 cut(s) 315, 348
BamHI GGATCC 1 cut(s) 134
BbvI GCAGC 1 cut(s) 122
BccI CCATC 2 cut(s) 43, 70
BcnI CCSGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 317
BfaI CTAG 2 cut(s) 561, 608
BfoI RGCGCY 1 cut(s) 561
BglII AGATCT 1 cut(s) 388
BisI GCNGC 3 cut(s) 11, 21, 111
BlnI CCTAGG 1 cut(s) 607
BlsI GCNGC 3 cut(s) 12, 22, 112
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 2 cut(s) 283, 575
BmgT120I GGNCC 2 cut(s) 283, 575
BmiI GGNNCC 2 cut(s) 136, 576
BmrFI CCNGG 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 35
Bpu14I TTCGAA 2 cut(s) 423, 487
BpuMI CCSGG 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 607
BsaWI WCCGGW 1 cut(s) 316
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 292
Bse1I ACTGG 1 cut(s) 593
Bse21I CCTNAGG 1 cut(s) 582
Bse3DI GCAATG 1 cut(s) 477
BseDI CCNNGG 1 cut(s) 607
BseGI GGATG 4 cut(s) 81, 229, 316, 619
BseLI CCNNNNNNNGG 1 cut(s) 292
BseMI GCAATG 1 cut(s) 477
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 122
BshFI GGCC 2 cut(s) 10, 612
BsiSI CCGG 2 cut(s) 138, 317
BslI CCNNNNNNNGG 1 cut(s) 292
BsmAI GTCTC 1 cut(s) 317
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 2 cut(s) 10, 612
Bsp119I TTCGAA 2 cut(s) 423, 487
Bsp143I GATC 4 cut(s) 29, 134, 198, 388
BspACI CCGC 6 cut(s) 11, 20, 59, 113, 123, 238
BspANI GGCC 2 cut(s) 10, 612
BspCNI CTCAG 1 cut(s) 283
BspLI GGNNCC 2 cut(s) 136, 576
BspPI GGATC 3 cut(s) 37, 129, 142
BspT104I TTCGAA 2 cut(s) 423, 487
BsrBI CCGCTC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 477
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 1 cut(s) 607
BssMI GATC 4 cut(s) 29, 134, 198, 388
BssT1I CCWWGG 1 cut(s) 607
Bst6I CTCTTC 2 cut(s) 273, 315
BstBI TTCGAA 2 cut(s) 423, 487
BstC8I GCNNGC 2 cut(s) 8, 236
BstDEI CTNAG 4 cut(s) 291, 392, 549, 582
BstF5I GGATG 4 cut(s) 81, 229, 316, 619
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 4 cut(s) 32, 137, 201, 391
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 4 cut(s) 29, 134, 198, 388
BstSCI CCNGG 1 cut(s) 137
BstV1I GCAGC 1 cut(s) 122
BstX2I RGATCY 2 cut(s) 134, 388
BstYI RGATCY 2 cut(s) 134, 388
Bsu36I CCTNAGG 1 cut(s) 582
BsuRI GGCC 2 cut(s) 10, 612
BtgZI GCGATG 1 cut(s) 62
BtsCI GGATG 4 cut(s) 81, 229, 316, 619
BtsI GCAGTG 1 cut(s) 164
BtsIMutI CAGTG 2 cut(s) 164, 273
Cac8I GCNNGC 2 cut(s) 8, 236
CfoI GCGC 1 cut(s) 560
Cfr13I GGNCC 2 cut(s) 283, 575
CviAII CATG 1 cut(s) 220
CviJI RGCY 5 cut(s) 6, 10, 234, 483, 612
CviKI_1 RGCY 5 cut(s) 6, 10, 234, 483, 612
DdeI CTNAG 4 cut(s) 291, 392, 549, 582
DpnI GATC 4 cut(s) 31, 136, 200, 390
DpnII GATC 4 cut(s) 29, 134, 198, 388
EaeI YGGCCR 1 cut(s) 8
Eam1104I CTCTTC 2 cut(s) 273, 315
EarI CTCTTC 2 cut(s) 273, 315
Eco130I CCWWGG 1 cut(s) 607
Eco47I GGWCC 2 cut(s) 283, 575
Eco81I CCTNAGG 1 cut(s) 582
EcoO109I RGGNCCY 1 cut(s) 575
EcoT14I CCWWGG 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 607
FaeI CATG 1 cut(s) 223
FaiI YATR 8 cut(s) 221, 369, 384, 399, 512, 514, 516, 628
FalI AAGNNNNNCTT 2 cut(s) 312, 344
FatI CATG 1 cut(s) 219
FblI GTMKAC 1 cut(s) 35
Fnu4HI GCNGC 3 cut(s) 11, 21, 111
FokI GGATG 4 cut(s) 88, 236, 323, 606
Fsp4HI GCNGC 3 cut(s) 11, 21, 111
FspBI CTAG 2 cut(s) 561, 608
GlaI GCGC 1 cut(s) 559
GluI GCNGC 3 cut(s) 11, 21, 111
GsuI CTGGAG 1 cut(s) 35
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 2 cut(s) 10, 612
HapII CCGG 2 cut(s) 138, 317
HhaI GCGC 1 cut(s) 560
Hin1II CATG 1 cut(s) 223
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 3 cut(s) 36, 190, 418
HindII GTYRAC 3 cut(s) 36, 190, 418
HinfI GANTC 5 cut(s) 65, 248, 263, 325, 425
HpaII CCGG 2 cut(s) 138, 317
Hpy166II GTNNAC 4 cut(s) 36, 190, 418, 442
Hpy188I TCNGA 4 cut(s) 70, 247, 292, 530
Hpy8I GTNNAC 4 cut(s) 36, 190, 418, 442
Hpy99I CGWCG 3 cut(s) 37, 40, 86
HpyAV CCTTC 3 cut(s) 124, 525, 548
HpyCH4V TGCA 2 cut(s) 110, 470
HpyF3I CTNAG 4 cut(s) 291, 392, 549, 582
Hsp92II CATG 1 cut(s) 223
HspAI GCGC 1 cut(s) 558
Kzo9I GATC 4 cut(s) 29, 134, 198, 388
LpnPI CCDG 3 cut(s) 151, 330, 606
Lsp1109I GCAGC 1 cut(s) 122
MaeI CTAG 2 cut(s) 561, 608
MalI GATC 4 cut(s) 31, 136, 200, 390
MbiI CCGCTC 1 cut(s) 123
MboI GATC 4 cut(s) 29, 134, 198, 388
MboII GAAGA 7 cut(s) 290, 308, 311, 332, 398, 413, 446
MflI RGATCY 2 cut(s) 134, 388
MluCI AATT 1 cut(s) 253
MlyI GAGTC 2 cut(s) 74, 319
MmeI TCCRAC 2 cut(s) 48, 480
MnlI CCTC 9 cut(s) 10, 33, 37, 55, 64, 274, 286, 301, 588
MspA1I CMGCKG 2 cut(s) 13, 113
MspI CCGG 2 cut(s) 138, 317
MspR9I CCNGG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 112
NciI CCSGG 1 cut(s) 139
NdeII GATC 4 cut(s) 29, 134, 198, 388
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 2 cut(s) 136, 576
NspV TTCGAA 2 cut(s) 423, 487
PcsI WCGNNNNNNNCGW 1 cut(s) 44
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 3 cut(s) 248, 263, 425
PflFI GACNNNGTC 1 cut(s) 185
PfoI TCCNGGA 1 cut(s) 137
PkrI GCNGC 3 cut(s) 12, 22, 112
PleI GAGTC 2 cut(s) 73, 319
PpsI GAGTC 2 cut(s) 73, 319
PpuMI RGGWCCY 1 cut(s) 575
Psp5II RGGWCCY 1 cut(s) 575
PspN4I GGNNCC 2 cut(s) 136, 576
PspPI GGNCC 2 cut(s) 283, 575
PspPPI RGGWCCY 1 cut(s) 575
PsuI RGATCY 2 cut(s) 134, 388
PsyI GACNNNGTC 1 cut(s) 185
SalI GTCGAC 1 cut(s) 34
SatI GCNGC 3 cut(s) 11, 21, 111
Sau3AI GATC 4 cut(s) 29, 134, 198, 388
Sau96I GGNCC 2 cut(s) 283, 575
SchI GAGTC 2 cut(s) 74, 319
ScrFI CCNGG 1 cut(s) 139
SetI ASST 3 cut(s) 285, 485, 609
SfuI TTCGAA 2 cut(s) 423, 487
SgrDI CGTCGACG 1 cut(s) 34
SinI GGWCC 2 cut(s) 283, 575
Sse9I AATT 1 cut(s) 253
SsiI CCGC 6 cut(s) 11, 20, 59, 113, 123, 238
SspI AATATT 1 cut(s) 153
SspMI CTAG 2 cut(s) 561, 608
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 607
TaqI TCGA 5 cut(s) 35, 148, 197, 423, 487
TasI AATT 1 cut(s) 253
TauI GCSGC 2 cut(s) 13, 23
TfiI GAWTC 3 cut(s) 248, 263, 425
TscAI CASTG 2 cut(s) 171, 273
TseI GCWGC 1 cut(s) 110
TspDTI ATGAA 5 cut(s) 208, 291, 327, 399, 414
TspRI CASTG 2 cut(s) 171, 273
Tth111I GACNNNGTC 1 cut(s) 185
VpaK11BI GGWCC 2 cut(s) 283, 575
XmaJI CCTAGG 1 cut(s) 607
XmiI GTMKAC 1 cut(s) 35
XspI CTAG 2 cut(s) 561, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.