RchiOBHm_Chr6g0246161

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000074
Physical Location & Seq
Forward (+)
1935377 .. 1939963
4587 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22065

Sequence Viewer

Length: 2454 bp
ATGGATGAGAGCGGCATGCGATTCAGTGAACCGAATTACCATGGTTGGTCTGTAGATGAGGATGACTTTTCAGATGAGTACGAAGAGTTATTCTCGGATGAGGAAGCTTCCCAGAGTGCAAATATGGATGAGAATCTGGATTGTCTACACTTCAACGGCAAGAAGTATGAAGATCTTAGATCCTCTGATATGATTGGTGTTGAGTTTAGCAGCGTCGAGGCAGTGGATACATTCTATGCTTACTATTCACTTGCCATGGGCTTCAGTTTCAGAAAGGAAAAGTTGTGTCGAAATACAGCACAAGTGGTGGTGAGAAGACAGTTAGTGTGTTCAAAGGAGGGTGAGAGAAAAAAAAGGGGCAAGCCTGATCCTAGTTTTGCATCGGAAATCATTTCATGCGCCCAAAATCTTAGTCCACCTCATGGGACAAAACAGGTATGCAAGAGGAAGACAGTTAACCAGAAACCAATCGTGGAAGATGCTGATAGAAGAAGTATGAAACGTTCTGGGAAGCAGTCTGGTGAAGATGAACATGGAAAAAAAAGGCAGCGCCCTCCACAGAGAAATATTACCAGAGGTAATTGTCAAGCTCGTATCACAGCGCGCCGATGCAAGGAAAGTGGTGTCTTCCGTGTGGTCCAATTCATCACCGAACATAACCACGCCCTTGTTACAACAGAGTTTGTTCCCTTCCTCCGATCGCACCGCAAGGTTCGGGACCATGACGTTGCTCAGGTAACAGCACTTAAGAAAGTCTCTGTTGGTACATGCCGGGCTTATGAGTTGTTGGTCCACCAAGCCGGTGGCCATGAATTTGTTGGTTTCCTCATCAAAGATTTGTATAACAAGATGGACTCTGAAAGGAAGGAACTCATGGTTGATGGTGACGCCCAGTCTACAATCAGTTTCATGAATTTGAAAGCATCTAAAGAGGCGGAGTTTTTCTGTTTGTTCAGTGTTGATGCAGAAGGCCGGCTGGGTAATATGTTTTGGAGAGATACGAAGTCTCTAGCAGATTACAATAATTTTGGGGATGTTTTGATTATTGATAGCACCTACAAGACCAACATATACGGCAAACCATTAGCCATCTTTGTTGGTGCAAATAACCACAGGGCGACAGTACTATTTGCGTGTGCATTGTTGGCTGATGAGAGTGAGGACACCTACAATTGGGTGGTTACGGCCTTTTTGACTTCCATGAGGGGGAAAAAACCAATATCAGTCCTCACTGACGGGGACGAGGCATTGAGAAATGCAGTTGTGAATCTCATTCCGGAGGCCCGACATCGATTGTGTGCATGGCACATTGCTAAGAATGTTGTAAAAAATGTTAGGGATGCGGATGTCCAAAGGGATTTTTGCCACCTAATTTTTGCCGGACTCGGAGTTGATGAGTGGGAAAAGTCGTGGCATTACATGGTGACAATGAATGGGCTTCAAGACAACAAATGGGTTGCTGCAATGTACAACAAGAGGGAGAGGTGGGCAGAAGCTTTCTTTAGGAACCATTTCTTCAGTGGTATGTGTACCACTCAAAGATGCGAGGCAATGCATAGAAATTTAAAAGGTGGGGTTGGTCGTTACATGAGGTTGTGTGAAGTGTTGCCACGCATGGACAAGACAATTGAATGCATCAGGTTTAATGGGCTTAACGATGACTTCAAATCAATGAACTCGCACCCGGTTATTGGCAGCCACATGCGGTGTATTCAACAACAGGTTAGTGTAAGGTTTACCCACGACGTATTCCTCCTCATAAAAGATCAAATTCTTTTTGAGTCAAAGTTTCTCGTTGCTGACCGTGTTCGTTATGAGAATCAAGGATCAACACTTCATCTTGTAACCCAATATGGTAAACCTGAAAGGACATGGCATGTGACACATTATCAAGGTAAGCCCGACCTTTCTTTCGTATGCTCATGTCACCTCTTTGAGTCGGATGGTATTCCTTGCTGCCACATCTTCACAGTCATAAAGACAATGAATATGACTACCCTTCCAGAATCTTTGGTTAATCAGAGGTGGACAAAACAGGCTTGTACCAAAGATACCAGCACCCTCAGTAGTGGAATAATGCCCGCCAAGGATTTGCAGCTTGCCCGTTATGGGCAAATGATGGGTGATTGTGCTCAAATTTGTCATTCAGCTTCATTCTCAGATGAGGCATATGAAGAAATCACTAACTGTCTTAGTCGACTAATGGTTAGGTCCAAAACATTCAAGAGATGCAAAGATAGTCAGCCACCAGAAACTGTTGATGGTCTACAACCTAATGTGATTAGGGATCCGAACGTGTGCAAAACCAAGGGCACTCATTCCAGGCATTCCACCAGTGTTGAGGTTGAGAGGGATCAGCCAGGAGGGAGGGGTTGTGGATTTTGCAGCCGGCCAGGTCATAATGTACGCACTTGTGCACTGCTAGCTGCACAAAATGGGGGGGGAAAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

817

Amino Acids

92.92

Weight (kDa)

8.42

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 77 - 121 1.8e-06 FAR1 DNA-binding domain
FAR1 PF03101 172 - 224 2.7e-07 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 317 - 429 2.8e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 346 - 440 3.3e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 422
AccBSI CCGCTC 1 cut(s) 12
AccI GTMKAC 4 cut(s) 145, 896, 2197, 2266
AccII CGCG 1 cut(s) 604
AccIII TCCGGA 1 cut(s) 1276
AciI CCGC 6 cut(s) 12, 706, 935, 1343, 1705, 2082
AclI AACGTT 1 cut(s) 502
AclWI GGATC 6 cut(s) 174, 362, 1834, 2282, 2295, 2361
AcoI YGGCCR 2 cut(s) 805, 2390
AcsI RAATTY 5 cut(s) 812, 913, 1561, 1770, 2136
AcuI CTGAAG 2 cut(s) 247, 1501
AcyI GRCGYC 1 cut(s) 888
AfaI GTAC 7 cut(s) 80, 766, 1125, 1469, 1531, 2044, 2406
AfiI CCNNNNNNNGG 6 cut(s) 422, 613, 1173, 1206, 1691, 2109
AflII CTTAAG 1 cut(s) 746
AflIII ACRYGT 1 cut(s) 2295
AgsI TTSAA 8 cut(s) 154, 333, 919, 1442, 1631, 1666, 1715, 2224
AhdI GACNNNNNGTC 1 cut(s) 892
AjnI CCWGG 3 cut(s) 2321, 2359, 2392
AluBI AGCT 6 cut(s) 107, 590, 1496, 2098, 2150, 2426
AluI AGCT 6 cut(s) 107, 590, 1496, 2098, 2150, 2426
Alw21I GWGCWC 2 cut(s) 2134, 2419
Alw26I GTCTC 2 cut(s) 760, 1011
Alw44I GTGCAC 1 cut(s) 2415
AlwI GGATC 6 cut(s) 174, 362, 1834, 2282, 2295, 2361
AlwNI CAGNNNCTG 1 cut(s) 2255
Aor13HI TCCGGA 1 cut(s) 1276
AoxI GGCC 5 cut(s) 805, 970, 1185, 1281, 2390
ApaLI GTGCAC 1 cut(s) 2415
ApeKI GCWGC 8 cut(s) 210, 547, 1460, 1695, 1956, 2095, 2385, 2426
ApoI RAATTY 5 cut(s) 812, 913, 1561, 1770, 2136
ArsI GACNNNNNNTTYG 4 cut(s) 397, 429, 1895, 1927
Asp700I GAANNNNTTC 1 cut(s) 1511
AspLEI GCGC 4 cut(s) 401, 552, 604, 606
AspS9I GGNCC 5 cut(s) 637, 718, 790, 1282, 2211
AsuC2I CCSGG 2 cut(s) 773, 1685
AsuHPI GGTGA 8 cut(s) 322, 353, 533, 640, 896, 1435, 1919, 2135
AsuNHI GCTAGC 1 cut(s) 2422
AvaII GGWCC 4 cut(s) 637, 718, 790, 2211
BaeGI GKGCMC 2 cut(s) 2315, 2419
BalI TGGCCA 1 cut(s) 807
BamHI GGATCC 1 cut(s) 2287
BbsI GAAGAC 3 cut(s) 322, 455, 619
Bbv12I GWGCWC 2 cut(s) 2134, 2419
BbvI GCAGC 8 cut(s) 222, 559, 1447, 1707, 1943, 2107, 2397, 2413
BccI CCATC 6 cut(s) 844, 875, 1097, 1937, 2113, 2255
BceAI ACGGC 3 cut(s) 172, 1090, 1200
BciT130I CCWGG 3 cut(s) 2323, 2361, 2394
BciVI GTATCC 1 cut(s) 220
BcnI CCSGG 2 cut(s) 773, 1685
BcoDI GTCTC 2 cut(s) 760, 1011
BfaI CTAG 3 cut(s) 372, 1010, 2423
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 553
BfrI CTTAAG 1 cut(s) 746
BfuI GTATCC 1 cut(s) 220
BglII AGATCT 1 cut(s) 172
BisI GCNGC 9 cut(s) 13, 211, 548, 1461, 1696, 1957, 2096, 2386, 2427
BlsI GCNGC 9 cut(s) 14, 212, 549, 1462, 1697, 1958, 2097, 2387, 2428
BmcAI AGTACT 1 cut(s) 1125
Bme1390I CCNGG 5 cut(s) 773, 1685, 2323, 2361, 2394
Bme18I GGWCC 4 cut(s) 637, 718, 790, 2211
BmeRI GACNNNNNGTC 1 cut(s) 892
BmgT120I GGNCC 5 cut(s) 637, 718, 790, 1282, 2211
BmiI GGNNCC 3 cut(s) 719, 1508, 2289
BmrFI CCNGG 5 cut(s) 773, 1685, 2323, 2361, 2394
BmrI ACTGGG 1 cut(s) 886
BmsI GCATC 9 cut(s) 389, 469, 599, 932, 952, 1330, 1532, 1644, 2219
BmtI GCTAGC 1 cut(s) 2426
BmuI ACTGGG 1 cut(s) 886
BpiI GAAGAC 3 cut(s) 322, 455, 619
BplI GAGNNNNNCTC 2 cut(s) 77, 109
Bpu10I CCTNAGC 1 cut(s) 732
BpuMI CCSGG 2 cut(s) 773, 1685
Bsa29I ATCGAT 1 cut(s) 1291
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 888
BsaJI CCNNGG 4 cut(s) 40, 255, 2085, 2307
BsaWI WCCGGW 1 cut(s) 1276
BsaXI ACNNNNNCTCC 2 cut(s) 2359, 2389
Bsc4I CCNNNNNNNGG 6 cut(s) 422, 613, 1173, 1206, 1691, 2109
Bse118I RCCGGY 3 cut(s) 800, 972, 2388
Bse1I ACTGG 2 cut(s) 892, 2334
Bse3DI GCAATG 3 cut(s) 1308, 1470, 1557
Bse8I GATNNNNATC 1 cut(s) 132
BseAI TCCGGA 1 cut(s) 1276
BseBI CCWGG 3 cut(s) 2323, 2361, 2394
BseCI ATCGAT 1 cut(s) 1291
BseDI CCNNGG 4 cut(s) 40, 255, 2085, 2307
BseGI GGATG 8 cut(s) 10, 67, 103, 133, 1039, 1345, 1351, 1948
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 6 cut(s) 422, 613, 1173, 1206, 1691, 2109
BseMI GCAATG 3 cut(s) 1308, 1470, 1557
BseMII CTCAG 3 cut(s) 746, 2077, 2172
BseNI ACTGG 2 cut(s) 892, 2334
BsePI GCGCGC 1 cut(s) 602
BseRI GAGGAG 1 cut(s) 1745
BseSI GKGCMC 2 cut(s) 2315, 2419
BseXI GCAGC 8 cut(s) 222, 559, 1447, 1707, 1943, 2107, 2397, 2413
BseYI CCCAGC 1 cut(s) 976
BsgI GTGCAG 1 cut(s) 2412
Bsh1236I CGCG 1 cut(s) 604
Bsh1285I CGRYCG 1 cut(s) 701
BshFI GGCC 5 cut(s) 807, 972, 1187, 1283, 2392
BshVI ATCGAT 1 cut(s) 1291
BsiEI CGRYCG 1 cut(s) 701
BsiHKAI GWGCWC 2 cut(s) 2134, 2419
BsiSI CCGG 7 cut(s) 772, 801, 973, 1277, 1380, 1685, 2389
BslFI GGGAC 3 cut(s) 439, 731, 1253
BslI CCNNNNNNNGG 6 cut(s) 422, 613, 1173, 1206, 1691, 2109
BsmAI GTCTC 2 cut(s) 760, 1011
BsmFI GGGAC 3 cut(s) 439, 731, 1253
BsmI GAATGC 2 cut(s) 1637, 2326
BsnI GGCC 5 cut(s) 807, 972, 1187, 1283, 2392
Bsp1286I GDGCHC 3 cut(s) 2134, 2315, 2419
Bsp13I TCCGGA 1 cut(s) 1276
Bsp1407I TGTACA 1 cut(s) 1467
Bsp143I GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
Bsp19I CCATGG 2 cut(s) 40, 255
BspACI CCGC 6 cut(s) 12, 706, 935, 1343, 1705, 2082
BspANI GGCC 5 cut(s) 807, 972, 1187, 1283, 2392
BspCNI CTCAG 3 cut(s) 745, 2076, 2171
BspDI ATCGAT 1 cut(s) 1291
BspEI TCCGGA 1 cut(s) 1276
BspFNI CGCG 1 cut(s) 604
BspHI TCATGA 1 cut(s) 909
BspLI GGNNCC 3 cut(s) 719, 1508, 2289
BspOI GCTAGC 1 cut(s) 2426
BspPI GGATC 6 cut(s) 174, 362, 1834, 2282, 2295, 2361
BspTI CTTAAG 1 cut(s) 746
BsrBI CCGCTC 1 cut(s) 12
BsrDI GCAATG 3 cut(s) 1308, 1470, 1557
BsrFI RCCGGY 3 cut(s) 800, 972, 2388
BsrGI TGTACA 1 cut(s) 1467
BsrI ACTGG 2 cut(s) 892, 2334
BssAI RCCGGY 3 cut(s) 800, 972, 2388
BssECI CCNNGG 4 cut(s) 40, 255, 2085, 2307
BssHII GCGCGC 1 cut(s) 602
BssMI GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
BssNI GRCGYC 1 cut(s) 888
BssT1I CCWWGG 4 cut(s) 40, 255, 2085, 2307
Bst2UI CCWGG 3 cut(s) 2323, 2361, 2394
Bst4CI ACNGT 7 cut(s) 321, 454, 1123, 1805, 1972, 2189, 2257
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 888
BstAFI CTTAAG 1 cut(s) 746
BstAUI TGTACA 1 cut(s) 1467
BstC8I GCNNGC 8 cut(s) 17, 362, 604, 974, 2082, 2100, 2390, 2424
BstDEI CTNAG 7 cut(s) 176, 410, 732, 1314, 2063, 2158, 2192
BstDSI CCRYGG 2 cut(s) 40, 255
BstF5I GGATG 8 cut(s) 10, 67, 103, 133, 1039, 1345, 1351, 1948
BstFNI CGCG 1 cut(s) 604
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 4 cut(s) 401, 552, 604, 606
BstKTI GATC 8 cut(s) 175, 182, 370, 701, 1768, 1829, 2290, 2356
BstMAI GTCTC 2 cut(s) 760, 1011
BstMBI GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
BstMCI CGRYCG 1 cut(s) 701
BstMWI GCNNNNNNNGC 2 cut(s) 1145, 2423
BstNI CCWGG 3 cut(s) 2323, 2361, 2394
BstNSI RCATGY 4 cut(s) 19, 771, 1705, 1880
BstSCI CCNGG 5 cut(s) 771, 1683, 2321, 2359, 2392
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 2 cut(s) 2315, 2419
BstUI CGCG 1 cut(s) 604
BstV1I GCAGC 8 cut(s) 222, 559, 1447, 1707, 1943, 2107, 2397, 2413
BstV2I GAAGAC 3 cut(s) 322, 455, 619
BstX2I RGATCY 3 cut(s) 172, 179, 2287
BstXI CCANNNNNNTGG 1 cut(s) 803
BstYI RGATCY 3 cut(s) 172, 179, 2287
Bsu15I ATCGAT 1 cut(s) 1291
BsuI GTATCC 1 cut(s) 220
BsuRI GGCC 5 cut(s) 807, 972, 1187, 1283, 2392
BsuTUI ATCGAT 1 cut(s) 1291
BtgI CCRYGG 2 cut(s) 40, 255
BtsCI GGATG 8 cut(s) 10, 67, 103, 133, 1039, 1345, 1351, 1948
BtsI GCAGTG 2 cut(s) 228, 2417
BtsIMutI CAGTG 7 cut(s) 31, 228, 961, 1230, 1525, 2341, 2417
Cac8I GCNNGC 8 cut(s) 17, 362, 604, 974, 2082, 2100, 2390, 2424
CaiI CAGNNNCTG 1 cut(s) 2255
CciI TCATGA 1 cut(s) 909
CfoI GCGC 4 cut(s) 401, 552, 604, 606
Cfr10I RCCGGY 3 cut(s) 800, 972, 2388
Cfr13I GGNCC 5 cut(s) 637, 718, 790, 1282, 2211
ClaI ATCGAT 1 cut(s) 1291
CseI GACGC 2 cut(s) 202, 896
Csp6I GTAC 7 cut(s) 79, 765, 1124, 1468, 1530, 2043, 2405
CspCI CAANNNNNGTGG 4 cut(s) 601, 636, 2320, 2355
CviQI GTAC 7 cut(s) 79, 765, 1124, 1468, 1530, 2043, 2405
DdeI CTNAG 7 cut(s) 176, 410, 732, 1314, 2063, 2158, 2192
DpnI GATC 8 cut(s) 174, 181, 369, 700, 1767, 1828, 2289, 2355
DpnII GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
DraI TTTAAA 1 cut(s) 1566
DriI GACNNNNNGTC 1 cut(s) 892
EaeI YGGCCR 2 cut(s) 805, 2390
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 892
EarI CTCTTC 1 cut(s) 78
EciI GGCGGA 1 cut(s) 950
Eco130I CCWWGG 4 cut(s) 40, 255, 2085, 2307
Eco47I GGWCC 4 cut(s) 637, 718, 790, 2211
Eco57I CTGAAG 2 cut(s) 247, 1501
EcoRII CCWGG 3 cut(s) 2321, 2359, 2392
EcoT14I CCWWGG 4 cut(s) 40, 255, 2085, 2307
EcoT22I ATGCAT 2 cut(s) 1557, 1637
ErhI CCWWGG 4 cut(s) 40, 255, 2085, 2307
FaqI GGGAC 3 cut(s) 439, 731, 1253
FauI CCCGC 1 cut(s) 2089
FauNDI CATATG 1 cut(s) 2170
FblI GTMKAC 4 cut(s) 145, 896, 2197, 2266
Fnu4HI GCNGC 9 cut(s) 13, 211, 548, 1461, 1696, 1957, 2096, 2386, 2427
FokI GGATG 8 cut(s) 17, 74, 110, 140, 1046, 1352, 1358, 1955
Fsp4HI GCNGC 9 cut(s) 13, 211, 548, 1461, 1696, 1957, 2096, 2386, 2427
FspBI CTAG 3 cut(s) 372, 1010, 2423
GlaI GCGC 4 cut(s) 400, 551, 603, 605
GluI GCNGC 9 cut(s) 13, 211, 548, 1461, 1696, 1957, 2096, 2386, 2427
GsaI CCCAGC 1 cut(s) 980
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 5 cut(s) 807, 972, 1187, 1283, 2392
HapII CCGG 7 cut(s) 772, 801, 973, 1277, 1380, 1685, 2389
HgaI GACGC 2 cut(s) 202, 896
HhaI GCGC 4 cut(s) 401, 552, 604, 606
Hin1I GRCGYC 1 cut(s) 888
Hin6I GCGC 4 cut(s) 399, 550, 602, 604
HinP1I GCGC 4 cut(s) 399, 550, 602, 604
HincII GTYRAC 2 cut(s) 457, 2198
HindII GTYRAC 2 cut(s) 457, 2198
HindIII AAGCTT 2 cut(s) 105, 1494
HinfI GANTC 9 cut(s) 21, 133, 854, 1267, 1383, 1781, 1819, 1937, 2006
HpaI GTTAAC 1 cut(s) 457
HpaII CCGG 7 cut(s) 772, 801, 973, 1277, 1380, 1685, 2389
HphI GGTGA 8 cut(s) 322, 353, 533, 640, 896, 1435, 1919, 2135
Hpy188III TCNNGA 7 cut(s) 137, 716, 910, 1277, 1442, 2003, 2224
Hpy99I CGWCG 2 cut(s) 218, 1748
HpyAV CCTTC 4 cut(s) 700, 859, 962, 2009
HpyCH4III ACNGT 7 cut(s) 321, 454, 1123, 1805, 1972, 2189, 2257
HpyCH4IV ACGT 4 cut(s) 502, 726, 1746, 2295
HpyF10VI GCNNNNNNNGC 2 cut(s) 1145, 2423
HpyF3I CTNAG 7 cut(s) 176, 410, 732, 1314, 2063, 2158, 2192
HpySE526I ACGT 4 cut(s) 502, 726, 1746, 2295
Hsp92I GRCGYC 1 cut(s) 888
HspAI GCGC 4 cut(s) 399, 550, 602, 604
Kpn2I TCCGGA 1 cut(s) 1276
KroI GCCGGC 2 cut(s) 972, 2388
KroNI GCCGGC 2 cut(s) 974, 2390
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
Lsp1109I GCAGC 8 cut(s) 222, 559, 1447, 1707, 1943, 2107, 2397, 2413
LweI GCATC 9 cut(s) 389, 469, 599, 932, 952, 1330, 1532, 1644, 2219
MaeI CTAG 3 cut(s) 372, 1010, 2423
MaeII ACGT 4 cut(s) 502, 726, 1746, 2295
MaeIII GTNAC 9 cut(s) 670, 736, 884, 1180, 1423, 1583, 1843, 1879, 1925
MalI GATC 8 cut(s) 174, 181, 369, 700, 1767, 1828, 2289, 2355
MbiI CCGCTC 1 cut(s) 12
MboI GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
MfeI CAATTG 2 cut(s) 1171, 1626
MflI RGATCY 3 cut(s) 172, 179, 2287
MhlI GDGCHC 3 cut(s) 2134, 2315, 2419
MlsI TGGCCA 1 cut(s) 807
MluNI TGGCCA 1 cut(s) 807
MlyI GAGTC 4 cut(s) 848, 1377, 1790, 1946
MmeI TCCRAC 1 cut(s) 1920
Mox20I TGGCCA 1 cut(s) 807
Mph1103I ATGCAT 2 cut(s) 1557, 1637
MroI TCCGGA 1 cut(s) 1276
MroNI GCCGGC 2 cut(s) 972, 2388
MroXI GAANNNNTTC 1 cut(s) 1511
MscI TGGCCA 1 cut(s) 807
MseI TTAA 6 cut(s) 456, 747, 1565, 1644, 1653, 2016
Msp20I TGGCCA 1 cut(s) 807
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 7 cut(s) 772, 801, 973, 1277, 1380, 1685, 2389
MspR9I CCNGG 5 cut(s) 773, 1685, 2323, 2361, 2394
MunI CAATTG 2 cut(s) 1171, 1626
Mva1269I GAATGC 2 cut(s) 1637, 2326
MvaI CCWGG 3 cut(s) 2323, 2361, 2394
MvnI CGCG 1 cut(s) 604
MwoI GCNNNNNNNGC 2 cut(s) 1145, 2423
NaeI GCCGGC 2 cut(s) 974, 2390
NciI CCSGG 2 cut(s) 773, 1685
NcoI CCATGG 2 cut(s) 40, 255
NdeI CATATG 1 cut(s) 2170
NdeII GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
NgoMIV GCCGGC 2 cut(s) 972, 2388
NheI GCTAGC 1 cut(s) 2422
NlaIV GGNNCC 3 cut(s) 719, 1508, 2289
NmuCI GTSAC 4 cut(s) 884, 1423, 1879, 1925
NsiI ATGCAT 2 cut(s) 1557, 1637
NspI RCATGY 4 cut(s) 19, 771, 1705, 1880
PaeI GCATGC 1 cut(s) 19
PagI TCATGA 1 cut(s) 909
PauI GCGCGC 1 cut(s) 602
PctI GAATGC 2 cut(s) 1637, 2326
PdiI GCCGGC 2 cut(s) 974, 2390
PdmI GAANNNNTTC 1 cut(s) 1511
PfeI GAWTC 5 cut(s) 21, 133, 1267, 1819, 2006
PflMI CCANNNNNTGG 1 cut(s) 422
PkrI GCNGC 9 cut(s) 14, 212, 549, 1462, 1697, 1958, 2097, 2387, 2428
Ple19I CGATCG 1 cut(s) 701
PleI GAGTC 4 cut(s) 848, 1377, 1789, 1945
PpsI GAGTC 4 cut(s) 848, 1377, 1789, 1945
Psp1406I AACGTT 1 cut(s) 502
Psp6I CCWGG 3 cut(s) 2321, 2359, 2392
PspFI CCCAGC 1 cut(s) 976
PspGI CCWGG 3 cut(s) 2321, 2359, 2392
PspN4I GGNNCC 3 cut(s) 719, 1508, 2289
PspPI GGNCC 5 cut(s) 637, 718, 790, 1282, 2211
PsrI GAACNNNNNNTAC 2 cut(s) 487, 519
PstNI CAGNNNCTG 1 cut(s) 2255
PsuI RGATCY 3 cut(s) 172, 179, 2287
PteI GCGCGC 1 cut(s) 602
PvuI CGATCG 1 cut(s) 701
RsaI GTAC 7 cut(s) 80, 766, 1125, 1469, 1531, 2044, 2406
RsaNI GTAC 7 cut(s) 79, 765, 1124, 1468, 1530, 2043, 2405
SalI GTCGAC 1 cut(s) 2196
SaqAI TTAA 6 cut(s) 456, 747, 1565, 1644, 1653, 2016
SatI GCNGC 9 cut(s) 13, 211, 548, 1461, 1696, 1957, 2096, 2386, 2427
Sau3AI GATC 8 cut(s) 172, 179, 367, 698, 1765, 1826, 2287, 2353
Sau96I GGNCC 5 cut(s) 637, 718, 790, 1282, 2211
ScaI AGTACT 1 cut(s) 1125
SchI GAGTC 4 cut(s) 848, 1377, 1790, 1946
ScrFI CCNGG 5 cut(s) 773, 1685, 2323, 2361, 2394
SduI GDGCHC 3 cut(s) 2134, 2315, 2419
SfaNI GCATC 9 cut(s) 389, 469, 599, 932, 952, 1330, 1532, 1644, 2219
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 4 cut(s) 637, 718, 790, 2211
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SphI GCATGC 1 cut(s) 19
SsiI CCGC 6 cut(s) 12, 706, 935, 1343, 1705, 2082
SspI AATATT 1 cut(s) 568
SspMI CTAG 3 cut(s) 372, 1010, 2423
StyD4I CCNGG 5 cut(s) 771, 1683, 2321, 2359, 2392
StyI CCWWGG 4 cut(s) 40, 255, 2085, 2307
TaaI ACNGT 7 cut(s) 321, 454, 1123, 1805, 1972, 2189, 2257
TaiI ACGT 4 cut(s) 505, 729, 1749, 2298
TaqI TCGA 4 cut(s) 216, 289, 1291, 2197
TatI WGTACW 2 cut(s) 1123, 1467
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 5 cut(s) 21, 133, 1267, 1819, 2006
Tru1I TTAA 6 cut(s) 456, 747, 1565, 1644, 1653, 2016
Tru9I TTAA 6 cut(s) 456, 747, 1565, 1644, 1653, 2016
TscAI CASTG 7 cut(s) 31, 228, 961, 1237, 1525, 2341, 2424
TseFI GTSAC 4 cut(s) 884, 1423, 1879, 1925
TseI GCWGC 8 cut(s) 210, 547, 1460, 1695, 1956, 2095, 2385, 2426
Tsp45I GTSAC 4 cut(s) 884, 1423, 1879, 1925
TspGWI ACGGA 1 cut(s) 620
TspRI CASTG 7 cut(s) 31, 228, 961, 1237, 1525, 2341, 2424
Van91I CCANNNNNTGG 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 746
VneI GTGCAC 1 cut(s) 2415
VpaK11BI GGWCC 4 cut(s) 637, 718, 790, 2211
XapI RAATTY 5 cut(s) 812, 913, 1561, 1770, 2136
XceI RCATGY 4 cut(s) 19, 771, 1705, 1880
XcmI CCANNNNNNNNNTGG 3 cut(s) 800, 815, 1517
XmiI GTMKAC 4 cut(s) 145, 896, 2197, 2266
XmnI GAANNNNTTC 1 cut(s) 1511
XspI CTAG 3 cut(s) 372, 1010, 2423
ZrmI AGTACT 1 cut(s) 1125
Zsp2I ATGCAT 2 cut(s) 1557, 1637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.