ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Exo_endo_phos | PF03372 | 5 - 140 | 3.3e-12 | Endonuclease/Exonuclease/phosphatase family |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 462 |
| Acc36I | ACCTGC | 1 cut(s) | 662 |
| AccI | GTMKAC | 2 cut(s) | 676, 888 |
| AciI | CCGC | 3 cut(s) | 361, 475, 485 |
| AclWI | GGATC | 1 cut(s) | 33 |
| AcsI | RAATTY | 5 cut(s) | 146, 154, 217, 280, 1045 |
| AfaI | GTAC | 1 cut(s) | 166 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 72, 524 |
| AgsI | TTSAA | 3 cut(s) | 154, 566, 919 |
| AjnI | CCWGG | 1 cut(s) | 347 |
| AluBI | AGCT | 4 cut(s) | 35, 355, 965, 1034 |
| AluI | AGCT | 4 cut(s) | 35, 355, 965, 1034 |
| Alw26I | GTCTC | 2 cut(s) | 101, 848 |
| AlwI | GGATC | 1 cut(s) | 33 |
| Ama87I | CYCGRG | 1 cut(s) | 42 |
| AoxI | GGCC | 1 cut(s) | 75 |
| ApaI | GGGCCC | 1 cut(s) | 79 |
| ApeKI | GCWGC | 1 cut(s) | 472 |
| ApoI | RAATTY | 5 cut(s) | 146, 154, 217, 280, 1045 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 8 |
| AspS9I | GGNCC | 2 cut(s) | 75, 76 |
| AsuC2I | CCSGG | 3 cut(s) | 26, 43, 44 |
| AsuHPI | GGTGA | 1 cut(s) | 890 |
| AvaI | CYCGRG | 1 cut(s) | 42 |
| BaeGI | GKGCMC | 2 cut(s) | 49, 79 |
| BanII | GRGCYC | 1 cut(s) | 79 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 660, 692 |
| BauI | CACGAG | 1 cut(s) | 990 |
| BbvI | GCAGC | 1 cut(s) | 459 |
| BccI | CCATC | 6 cut(s) | 97, 260, 699, 721, 779, 838 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 254, 288 |
| BciT130I | CCWGG | 1 cut(s) | 349 |
| BciVI | GTATCC | 1 cut(s) | 540 |
| BcnI | CCSGG | 3 cut(s) | 26, 43, 44 |
| BcoDI | GTCTC | 2 cut(s) | 101, 848 |
| BfaI | CTAG | 1 cut(s) | 32 |
| BfmI | CTRYAG | 1 cut(s) | 375 |
| BfuAI | ACCTGC | 1 cut(s) | 662 |
| BfuI | GTATCC | 1 cut(s) | 540 |
| BisI | GCNGC | 1 cut(s) | 473 |
| BlsI | GCNGC | 1 cut(s) | 474 |
| Bme1390I | CCNGG | 4 cut(s) | 26, 43, 44, 349 |
| BmeT110I | CYCGRG | 1 cut(s) | 42 |
| BmgT120I | GGNCC | 2 cut(s) | 75, 76 |
| BmiI | GGNNCC | 2 cut(s) | 64, 77 |
| BmrFI | CCNGG | 4 cut(s) | 26, 43, 44, 349 |
| BmrI | ACTGGG | 1 cut(s) | 450 |
| BmuI | ACTGGG | 1 cut(s) | 450 |
| BpmI | CTGGAG | 1 cut(s) | 210 |
| BpuMI | CCSGG | 3 cut(s) | 26, 43, 44 |
| Bsa29I | ATCGAT | 1 cut(s) | 264 |
| BsaJI | CCNNGG | 4 cut(s) | 25, 42, 252, 348 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 261, 291, 544, 574 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 72, 524 |
| Bse1I | ACTGG | 3 cut(s) | 193, 310, 445 |
| BseBI | CCWGG | 1 cut(s) | 349 |
| BseCI | ATCGAT | 1 cut(s) | 264 |
| BseDI | CCNNGG | 4 cut(s) | 25, 42, 252, 348 |
| BseGI | GGATG | 5 cut(s) | 248, 391, 853, 931, 943 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 72, 524 |
| BseNI | ACTGG | 3 cut(s) | 193, 310, 445 |
| BseRI | GAGGAG | 2 cut(s) | 361, 804 |
| BseSI | GKGCMC | 2 cut(s) | 49, 79 |
| BseXI | GCAGC | 1 cut(s) | 459 |
| BshFI | GGCC | 1 cut(s) | 77 |
| BshVI | ATCGAT | 1 cut(s) | 264 |
| BsiHKCI | CYCGRG | 1 cut(s) | 42 |
| BsiSI | CCGG | 2 cut(s) | 25, 43 |
| BslFI | GGGAC | 1 cut(s) | 1031 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 72, 524 |
| BsmAI | GTCTC | 2 cut(s) | 101, 848 |
| BsmBI | CGTCTC | 1 cut(s) | 848 |
| BsmFI | GGGAC | 1 cut(s) | 1031 |
| BsnI | GGCC | 1 cut(s) | 77 |
| BsoBI | CYCGRG | 1 cut(s) | 42 |
| Bsp120I | GGGCCC | 1 cut(s) | 75 |
| Bsp1286I | GDGCHC | 2 cut(s) | 49, 79 |
| Bsp1407I | TGTACA | 1 cut(s) | 164 |
| Bsp143I | GATC | 3 cut(s) | 38, 502, 586 |
| BspACI | CCGC | 3 cut(s) | 361, 475, 485 |
| BspANI | GGCC | 1 cut(s) | 77 |
| BspDI | ATCGAT | 1 cut(s) | 264 |
| BspLI | GGNNCC | 2 cut(s) | 64, 77 |
| BspMI | ACCTGC | 1 cut(s) | 662 |
| BspPI | GGATC | 1 cut(s) | 33 |
| BsrGI | TGTACA | 1 cut(s) | 164 |
| BsrI | ACTGG | 3 cut(s) | 193, 310, 445 |
| BssECI | CCNNGG | 4 cut(s) | 25, 42, 252, 348 |
| BssMI | GATC | 3 cut(s) | 38, 502, 586 |
| BssSI | CACGAG | 1 cut(s) | 990 |
| Bst2BI | CACGAG | 1 cut(s) | 990 |
| Bst2UI | CCWGG | 1 cut(s) | 349 |
| Bst4CI | ACNGT | 3 cut(s) | 169, 379, 607 |
| BstAUI | TGTACA | 1 cut(s) | 164 |
| BstDEI | CTNAG | 2 cut(s) | 71, 506 |
| BstDSI | CCRYGG | 1 cut(s) | 252 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 70 |
| BstF5I | GGATG | 5 cut(s) | 248, 391, 853, 931, 943 |
| BstKTI | GATC | 3 cut(s) | 41, 505, 589 |
| BstMAI | GTCTC | 2 cut(s) | 101, 848 |
| BstMBI | GATC | 3 cut(s) | 38, 502, 586 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 306 |
| BstNI | CCWGG | 1 cut(s) | 349 |
| BstSCI | CCNGG | 4 cut(s) | 24, 41, 42, 347 |
| BstSFI | CTRYAG | 1 cut(s) | 375 |
| BstSLI | GKGCMC | 2 cut(s) | 49, 79 |
| BstV1I | GCAGC | 1 cut(s) | 459 |
| Bsu15I | ATCGAT | 1 cut(s) | 264 |
| BsuI | GTATCC | 1 cut(s) | 540 |
| BsuRI | GGCC | 1 cut(s) | 77 |
| BsuTUI | ATCGAT | 1 cut(s) | 264 |
| BtgI | CCRYGG | 1 cut(s) | 252 |
| BtsCI | GGATG | 5 cut(s) | 248, 391, 853, 931, 943 |
| BtsIMutI | CAGTG | 2 cut(s) | 186, 684 |
| BveI | ACCTGC | 1 cut(s) | 662 |
| Cfr13I | GGNCC | 2 cut(s) | 75, 76 |
| Cfr9I | CCCGGG | 1 cut(s) | 42 |
| ClaI | ATCGAT | 1 cut(s) | 264 |
| Csp6I | GTAC | 1 cut(s) | 165 |
| CviAII | CATG | 1 cut(s) | 931 |
| CviJI | RGCY | 8 cut(s) | 35, 77, 309, 355, 617, 802, 965, 1034 |
| CviKI_1 | RGCY | 8 cut(s) | 35, 77, 309, 355, 617, 802, 965, 1034 |
| CviQI | GTAC | 1 cut(s) | 165 |
| DdeI | CTNAG | 2 cut(s) | 71, 506 |
| DpnI | GATC | 3 cut(s) | 40, 504, 588 |
| DpnII | GATC | 3 cut(s) | 38, 502, 586 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 462 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 462 |
| EciI | GGCGGA | 1 cut(s) | 350 |
| Eco24I | GRGCYC | 1 cut(s) | 79 |
| Eco88I | CYCGRG | 1 cut(s) | 42 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 70 |
| EcoO109I | RGGNCCY | 1 cut(s) | 75 |
| EcoRI | GAATTC | 2 cut(s) | 217, 280 |
| EcoRII | CCWGG | 1 cut(s) | 347 |
| EcoT38I | GRGCYC | 1 cut(s) | 79 |
| Esp3I | CGTCTC | 1 cut(s) | 848 |
| FaeI | CATG | 1 cut(s) | 934 |
| FaqI | GGGAC | 1 cut(s) | 1031 |
| FatI | CATG | 1 cut(s) | 930 |
| FblI | GTMKAC | 2 cut(s) | 676, 888 |
| Fnu4HI | GCNGC | 1 cut(s) | 473 |
| FokI | GGATG | 5 cut(s) | 235, 398, 860, 938, 950 |
| FriOI | GRGCYC | 1 cut(s) | 79 |
| Fsp4HI | GCNGC | 1 cut(s) | 473 |
| FspBI | CTAG | 1 cut(s) | 32 |
| GluI | GCNGC | 1 cut(s) | 473 |
| GsuI | CTGGAG | 1 cut(s) | 210 |
| HaeIII | GGCC | 1 cut(s) | 77 |
| HapII | CCGG | 2 cut(s) | 25, 43 |
| Hin1II | CATG | 1 cut(s) | 934 |
| HinfI | GANTC | 3 cut(s) | 109, 366, 1002 |
| HpaII | CCGG | 2 cut(s) | 25, 43 |
| HphI | GGTGA | 1 cut(s) | 890 |
| Hpy166II | GTNNAC | 2 cut(s) | 677, 889 |
| Hpy188I | TCNGA | 7 cut(s) | 102, 223, 286, 385, 718, 817, 1044 |
| Hpy8I | GTNNAC | 2 cut(s) | 677, 889 |
| Hpy99I | CGWCG | 2 cut(s) | 54, 331 |
| HpyAV | CCTTC | 4 cut(s) | 333, 857, 928, 1018 |
| HpyCH4III | ACNGT | 3 cut(s) | 169, 379, 607 |
| HpyCH4IV | ACGT | 1 cut(s) | 857 |
| HpyCH4V | TGCA | 2 cut(s) | 599, 639 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 306 |
| HpyF3I | CTNAG | 2 cut(s) | 71, 506 |
| HpySE526I | ACGT | 1 cut(s) | 857 |
| Hsp92II | CATG | 1 cut(s) | 934 |
| Kzo9I | GATC | 3 cut(s) | 38, 502, 586 |
| LmnI | GCTCC | 1 cut(s) | 352 |
| Lsp1109I | GCAGC | 1 cut(s) | 459 |
| MaeI | CTAG | 1 cut(s) | 32 |
| MaeII | ACGT | 1 cut(s) | 857 |
| MaeIII | GTNAC | 2 cut(s) | 182, 708 |
| MalI | GATC | 3 cut(s) | 40, 504, 588 |
| MboI | GATC | 3 cut(s) | 38, 502, 586 |
| MboII | GAAGA | 7 cut(s) | 16, 131, 134, 237, 506, 734, 773 |
| MfeI | CAATTG | 1 cut(s) | 113 |
| MhlI | GDGCHC | 2 cut(s) | 49, 79 |
| MlyI | GAGTC | 1 cut(s) | 103 |
| MroXI | GAANNNNTTC | 1 cut(s) | 8 |
| MseI | TTAA | 7 cut(s) | 203, 234, 411, 446, 611, 651, 893 |
| MslI | CAYNNNNRTG | 1 cut(s) | 264 |
| MspI | CCGG | 2 cut(s) | 25, 43 |
| MspR9I | CCNGG | 4 cut(s) | 26, 43, 44, 349 |
| MunI | CAATTG | 1 cut(s) | 113 |
| MvaI | CCWGG | 1 cut(s) | 349 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 306 |
| NciI | CCSGG | 3 cut(s) | 26, 43, 44 |
| NdeII | GATC | 3 cut(s) | 38, 502, 586 |
| NlaIII | CATG | 1 cut(s) | 934 |
| NlaIV | GGNNCC | 2 cut(s) | 64, 77 |
| NmuCI | GTSAC | 1 cut(s) | 182 |
| PdmI | GAANNNNTTC | 1 cut(s) | 8 |
| PfeI | GAWTC | 2 cut(s) | 366, 1002 |
| PkrI | GCNGC | 1 cut(s) | 474 |
| PleI | GAGTC | 1 cut(s) | 103 |
| PpsI | GAGTC | 1 cut(s) | 103 |
| Psp6I | CCWGG | 1 cut(s) | 347 |
| PspGI | CCWGG | 1 cut(s) | 347 |
| PspN4I | GGNNCC | 2 cut(s) | 64, 77 |
| PspOMI | GGGCCC | 1 cut(s) | 75 |
| PspPI | GGNCC | 2 cut(s) | 75, 76 |
| RsaI | GTAC | 1 cut(s) | 166 |
| RsaNI | GTAC | 1 cut(s) | 165 |
| RseI | CAYNNNNRTG | 1 cut(s) | 264 |
| SaqAI | TTAA | 7 cut(s) | 203, 234, 411, 446, 611, 651, 893 |
| SatI | GCNGC | 1 cut(s) | 473 |
| Sau3AI | GATC | 3 cut(s) | 38, 502, 586 |
| Sau96I | GGNCC | 2 cut(s) | 75, 76 |
| SchI | GAGTC | 1 cut(s) | 103 |
| ScrFI | CCNGG | 4 cut(s) | 26, 43, 44, 349 |
| SduI | GDGCHC | 2 cut(s) | 49, 79 |
| SfcI | CTRYAG | 1 cut(s) | 375 |
| SmaI | CCCGGG | 1 cut(s) | 44 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 264 |
| SsiI | CCGC | 3 cut(s) | 361, 475, 485 |
| SspMI | CTAG | 1 cut(s) | 32 |
| StyD4I | CCNGG | 4 cut(s) | 24, 41, 42, 347 |
| TaaI | ACNGT | 3 cut(s) | 169, 379, 607 |
| TaiI | ACGT | 1 cut(s) | 860 |
| TaqI | TCGA | 3 cut(s) | 37, 264, 326 |
| TatI | WGTACW | 1 cut(s) | 164 |
| TfiI | GAWTC | 2 cut(s) | 366, 1002 |
| Tru1I | TTAA | 7 cut(s) | 203, 234, 411, 446, 611, 651, 893 |
| Tru9I | TTAA | 7 cut(s) | 203, 234, 411, 446, 611, 651, 893 |
| TscAI | CASTG | 2 cut(s) | 193, 691 |
| TseFI | GTSAC | 1 cut(s) | 182 |
| TseI | GCWGC | 1 cut(s) | 472 |
| Tsp45I | GTSAC | 1 cut(s) | 182 |
| TspDTI | ATGAA | 6 cut(s) | 17, 237, 332, 402, 947, 1041 |
| TspGWI | ACGGA | 1 cut(s) | 241 |
| TspMI | CCCGGG | 1 cut(s) | 42 |
| TspRI | CASTG | 2 cut(s) | 193, 691 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 70 |
| XapI | RAATTY | 5 cut(s) | 146, 154, 217, 280, 1045 |
| XmaI | CCCGGG | 1 cut(s) | 42 |
| XmiI | GTMKAC | 2 cut(s) | 676, 888 |
| XmnI | GAANNNNTTC | 1 cut(s) | 8 |
| XspI | CTAG | 1 cut(s) | 32 |