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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 5 |
| Acc36I | ACCTGC | 1 cut(s) | 210 |
| AccB1I | GGYRCC | 1 cut(s) | 266 |
| AciI | CCGC | 2 cut(s) | 77, 169 |
| AcuI | CTGAAG | 2 cut(s) | 105, 173 |
| AgsI | TTSAA | 3 cut(s) | 17, 146, 253 |
| AluBI | AGCT | 2 cut(s) | 187, 459 |
| AluI | AGCT | 2 cut(s) | 187, 459 |
| AoxI | GGCC | 2 cut(s) | 92, 401 |
| ApeKI | GCWGC | 1 cut(s) | 477 |
| AspLEI | GCGC | 1 cut(s) | 6 |
| AspS9I | GGNCC | 3 cut(s) | 92, 223, 546 |
| AsuC2I | CCSGG | 1 cut(s) | 271 |
| AvaII | GGWCC | 2 cut(s) | 223, 546 |
| BanI | GGYRCC | 1 cut(s) | 266 |
| BanII | GRGCYC | 1 cut(s) | 450 |
| BauI | CACGAG | 1 cut(s) | 530 |
| BbvI | GCAGC | 1 cut(s) | 489 |
| BccI | CCATC | 1 cut(s) | 41 |
| BciVI | GTATCC | 1 cut(s) | 64 |
| BcnI | CCSGG | 1 cut(s) | 271 |
| BfuAI | ACCTGC | 1 cut(s) | 210 |
| BfuI | GTATCC | 1 cut(s) | 64 |
| BisI | GCNGC | 1 cut(s) | 478 |
| BlsI | GCNGC | 1 cut(s) | 479 |
| Bme1390I | CCNGG | 1 cut(s) | 271 |
| Bme18I | GGWCC | 2 cut(s) | 223, 546 |
| BmgT120I | GGNCC | 3 cut(s) | 92, 223, 546 |
| BmiI | GGNNCC | 3 cut(s) | 224, 225, 268 |
| BmrFI | CCNGG | 1 cut(s) | 271 |
| BmsI | GCATC | 1 cut(s) | 346 |
| BpuMI | CCSGG | 1 cut(s) | 271 |
| BsaJI | CCNNGG | 1 cut(s) | 21 |
| Bse1I | ACTGG | 2 cut(s) | 95, 268 |
| Bse3DI | GCAATG | 1 cut(s) | 72 |
| BseDI | CCNNGG | 1 cut(s) | 21 |
| BseGI | GGATG | 1 cut(s) | 433 |
| BseMI | GCAATG | 1 cut(s) | 72 |
| BseNI | ACTGG | 2 cut(s) | 95, 268 |
| BseRI | GAGGAG | 2 cut(s) | 437, 548 |
| BseXI | GCAGC | 1 cut(s) | 489 |
| BshFI | GGCC | 2 cut(s) | 94, 403 |
| BshNI | GGYRCC | 1 cut(s) | 266 |
| BsiSI | CCGG | 1 cut(s) | 270 |
| BslFI | GGGAC | 1 cut(s) | 236 |
| BsmFI | GGGAC | 1 cut(s) | 236 |
| BsnI | GGCC | 2 cut(s) | 94, 403 |
| Bsp1286I | GDGCHC | 1 cut(s) | 450 |
| Bsp143I | GATC | 1 cut(s) | 39 |
| Bsp19I | CCATGG | 1 cut(s) | 21 |
| BspACI | CCGC | 2 cut(s) | 77, 169 |
| BspANI | GGCC | 2 cut(s) | 94, 403 |
| BspLI | GGNNCC | 3 cut(s) | 224, 225, 268 |
| BspMI | ACCTGC | 1 cut(s) | 210 |
| BspT107I | GGYRCC | 1 cut(s) | 266 |
| BsrDI | GCAATG | 1 cut(s) | 72 |
| BsrI | ACTGG | 2 cut(s) | 95, 268 |
| BssECI | CCNNGG | 1 cut(s) | 21 |
| BssMI | GATC | 1 cut(s) | 39 |
| BssSI | CACGAG | 1 cut(s) | 530 |
| BssT1I | CCWWGG | 1 cut(s) | 21 |
| Bst2BI | CACGAG | 1 cut(s) | 530 |
| Bst4CI | ACNGT | 4 cut(s) | 160, 295, 419, 522 |
| BstDEI | CTNAG | 1 cut(s) | 570 |
| BstDSI | CCRYGG | 1 cut(s) | 21 |
| BstF5I | GGATG | 1 cut(s) | 433 |
| BstHHI | GCGC | 1 cut(s) | 6 |
| BstKTI | GATC | 1 cut(s) | 42 |
| BstMBI | GATC | 1 cut(s) | 39 |
| BstSCI | CCNGG | 1 cut(s) | 269 |
| BstV1I | GCAGC | 1 cut(s) | 489 |
| BsuI | GTATCC | 1 cut(s) | 64 |
| BsuRI | GGCC | 2 cut(s) | 94, 403 |
| BtgI | CCRYGG | 1 cut(s) | 21 |
| BtsCI | GGATG | 1 cut(s) | 433 |
| BtsIMutI | CAGTG | 3 cut(s) | 102, 424, 518 |
| BveI | ACCTGC | 1 cut(s) | 210 |
| CfoI | GCGC | 1 cut(s) | 6 |
| Cfr13I | GGNCC | 3 cut(s) | 92, 223, 546 |
| CviAII | CATG | 3 cut(s) | 22, 331, 433 |
| CviJI | RGCY | 8 cut(s) | 83, 94, 187, 324, 347, 403, 448, 459 |
| CviKI_1 | RGCY | 8 cut(s) | 83, 94, 187, 324, 347, 403, 448, 459 |
| DdeI | CTNAG | 1 cut(s) | 570 |
| DpnI | GATC | 1 cut(s) | 41 |
| DpnII | GATC | 1 cut(s) | 39 |
| Eco130I | CCWWGG | 1 cut(s) | 21 |
| Eco24I | GRGCYC | 1 cut(s) | 450 |
| Eco47I | GGWCC | 2 cut(s) | 223, 546 |
| Eco57I | CTGAAG | 2 cut(s) | 105, 173 |
| EcoO109I | RGGNCCY | 2 cut(s) | 223, 546 |
| EcoT14I | CCWWGG | 1 cut(s) | 21 |
| EcoT38I | GRGCYC | 1 cut(s) | 450 |
| ErhI | CCWWGG | 1 cut(s) | 21 |
| FaeI | CATG | 3 cut(s) | 25, 334, 436 |
| FaiI | YATR | 5 cut(s) | 23, 237, 332, 434, 558 |
| FaqI | GGGAC | 1 cut(s) | 236 |
| FatI | CATG | 3 cut(s) | 21, 330, 432 |
| FauI | CCCGC | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 1 cut(s) | 478 |
| FokI | GGATG | 1 cut(s) | 440 |
| FriOI | GRGCYC | 1 cut(s) | 450 |
| Fsp4HI | GCNGC | 1 cut(s) | 478 |
| FspI | TGCGCA | 1 cut(s) | 5 |
| GlaI | GCGC | 1 cut(s) | 5 |
| GluI | GCNGC | 1 cut(s) | 478 |
| HaeIII | GGCC | 2 cut(s) | 94, 403 |
| HapII | CCGG | 1 cut(s) | 270 |
| HhaI | GCGC | 1 cut(s) | 6 |
| Hin1II | CATG | 3 cut(s) | 25, 334, 436 |
| Hin6I | GCGC | 1 cut(s) | 4 |
| HinP1I | GCGC | 1 cut(s) | 4 |
| HincII | GTYRAC | 1 cut(s) | 472 |
| HindII | GTYRAC | 1 cut(s) | 472 |
| HinfI | GANTC | 3 cut(s) | 17, 28, 119 |
| HpaII | CCGG | 1 cut(s) | 270 |
| Hpy166II | GTNNAC | 1 cut(s) | 472 |
| Hpy188I | TCNGA | 3 cut(s) | 33, 66, 192 |
| Hpy188III | TCNNGA | 2 cut(s) | 314, 530 |
| Hpy8I | GTNNAC | 1 cut(s) | 472 |
| Hpy99I | CGWCG | 1 cut(s) | 47 |
| HpyAV | CCTTC | 3 cut(s) | 83, 140, 355 |
| HpyCH4III | ACNGT | 4 cut(s) | 160, 295, 419, 522 |
| HpyCH4IV | ACGT | 1 cut(s) | 493 |
| HpyCH4V | TGCA | 3 cut(s) | 205, 303, 515 |
| HpyF3I | CTNAG | 1 cut(s) | 570 |
| HpySE526I | ACGT | 1 cut(s) | 493 |
| Hsp92II | CATG | 3 cut(s) | 25, 334, 436 |
| HspAI | GCGC | 1 cut(s) | 4 |
| KflI | GGGWCCC | 1 cut(s) | 223 |
| Kzo9I | GATC | 1 cut(s) | 39 |
| LmnI | GCTCC | 1 cut(s) | 114 |
| LpnPI | CCDG | 9 cut(s) | 71, 108, 215, 240, 249, 283, 333, 378, 549 |
| Lsp1109I | GCAGC | 1 cut(s) | 489 |
| LweI | GCATC | 1 cut(s) | 346 |
| MaeII | ACGT | 1 cut(s) | 493 |
| MaeIII | GTNAC | 2 cut(s) | 176, 295 |
| MalI | GATC | 1 cut(s) | 41 |
| MboI | GATC | 1 cut(s) | 39 |
| MboII | GAAGA | 2 cut(s) | 98, 497 |
| MhlI | GDGCHC | 1 cut(s) | 450 |
| MluCI | AATT | 3 cut(s) | 12, 35, 141 |
| MlyI | GAGTC | 2 cut(s) | 37, 113 |
| MmeI | TCCRAC | 1 cut(s) | 142 |
| MnlI | CCTC | 8 cut(s) | 73, 143, 415, 418, 526, 529, 537, 567 |
| MseI | TTAA | 1 cut(s) | 258 |
| MspI | CCGG | 1 cut(s) | 270 |
| MspR9I | CCNGG | 1 cut(s) | 271 |
| NciI | CCSGG | 1 cut(s) | 271 |
| NcoI | CCATGG | 1 cut(s) | 21 |
| NdeII | GATC | 1 cut(s) | 39 |
| NlaIII | CATG | 3 cut(s) | 25, 334, 436 |
| NlaIV | GGNNCC | 3 cut(s) | 224, 225, 268 |
| NsbI | TGCGCA | 1 cut(s) | 5 |
| PfeI | GAWTC | 1 cut(s) | 17 |
| PkrI | GCNGC | 1 cut(s) | 479 |
| PleI | GAGTC | 2 cut(s) | 36, 113 |
| PpsI | GAGTC | 2 cut(s) | 36, 113 |
| PpuMI | RGGWCCY | 2 cut(s) | 223, 546 |
| Psp5II | RGGWCCY | 2 cut(s) | 223, 546 |
| PspN4I | GGNNCC | 3 cut(s) | 224, 225, 268 |
| PspPI | GGNCC | 3 cut(s) | 92, 223, 546 |
| PspPPI | RGGWCCY | 2 cut(s) | 223, 546 |
| SaqAI | TTAA | 1 cut(s) | 258 |
| SatI | GCNGC | 1 cut(s) | 478 |
| Sau3AI | GATC | 1 cut(s) | 39 |
| Sau96I | GGNCC | 3 cut(s) | 92, 223, 546 |
| SchI | GAGTC | 2 cut(s) | 37, 113 |
| ScrFI | CCNGG | 1 cut(s) | 271 |
| SduI | GDGCHC | 1 cut(s) | 450 |
| SetI | ASST | 6 cut(s) | 178, 189, 204, 461, 496, 551 |
| SfaNI | GCATC | 1 cut(s) | 346 |
| SinI | GGWCC | 2 cut(s) | 223, 546 |
| Sse9I | AATT | 3 cut(s) | 12, 35, 141 |
| SsiI | CCGC | 2 cut(s) | 77, 169 |
| StyD4I | CCNGG | 1 cut(s) | 269 |
| StyI | CCWWGG | 1 cut(s) | 21 |
| TaaI | ACNGT | 4 cut(s) | 160, 295, 419, 522 |
| TaiI | ACGT | 1 cut(s) | 496 |
| TaqI | TCGA | 3 cut(s) | 45, 128, 313 |
| TasI | AATT | 3 cut(s) | 12, 35, 141 |
| TfiI | GAWTC | 1 cut(s) | 17 |
| Tru1I | TTAA | 1 cut(s) | 258 |
| Tru9I | TTAA | 1 cut(s) | 258 |
| TscAI | CASTG | 3 cut(s) | 102, 424, 525 |
| TseI | GCWGC | 1 cut(s) | 477 |
| TspDTI | ATGAA | 4 cut(s) | 91, 449, 504, 515 |
| TspGWI | ACGGA | 2 cut(s) | 153, 169 |
| TspRI | CASTG | 3 cut(s) | 102, 424, 525 |
| VpaK11BI | GGWCC | 2 cut(s) | 223, 546 |