Rorug05G0103100

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000074
Physical Location & Seq
Forward (+)
9077578 .. 9082494
4917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0103100.1

Sequence Viewer

Length: 3207 bp
ATGGCTGGTTCTTGTTCTTCGTCTACACATATATATAGGTATGATGTCTTCATTAGTTTCAGAGGGGAGGACACCCGCAAGACTTTTATCAGCCATCTTCTTAAGGCTTTAGATGGGAAGAAAATCGATACCTACATCGATTACAAACTTAAGAGCGGAGATGAAATTGGACCTGCCCTTTTGAAAGCAATCGAGGAATCAAAGATTTCATTGATTGTTTTCTCCGAAAACTATGCTTCTTCCCGATGGTGCTTGGATGAGATGATTCATATAAATGAATGCAAGGAAAGATATCAACAATCTGTTATACCTATTTTTTACAGAATAGATCCATCGCATGTGCGTTACCAGAGGGAGTCTTATGCAGCTGCATTCGCTAAACATGAAGAACGTTTCGAGGACAAGAGGGAAAGGGTGCTTAAGTGGAGGCATGCTTTAACAACAATAGCCAACCTATCAGGGTTTGACTCACTCACCACTAGTAATGATTCTGAATTAGTTGAGAGAATCGTCAAAGCTATTTTGATGCAGTTGGATCGTGAACTCTCTACTGATTTAACAGGATTGGTTGGAGTAGAAAGTCGCATTCAGAAAATTGAATCCTTATTATGCATTGACGGCATTGTCCCGCCAGAAGTTTGCCTTCGTACAGTAGGTATTTGGGGTATGGGTGGTATCGGTAAGACCACACTTGCTGGTGCTGTATTTAACCGACTCTCTTCTCAATTTGAAGCATCATGTTTTCTTGCAAATGTTAGGGAAGAATCAAAGAGATGTGGACTAAATCATCTCCGAGATGAACTTCTTCGTGAGTTATTAAAGGAAGAACGTTTAAGGATTGGCACTCCATCTGTAGGATCAACTTCGGTCAGAAAGAGGTTGTCCCATACAAAGGTCCTGGTTGTGCTTGACGATGTGAATGACTTCAGCCAATTGGAGCATTTAGTTGGAGAAGAAGTTCAGTTTGGTCGAGGAAGTCGAATCATTATCACAACTAGAGATAAGCAACTACTCAGAGATATGCGACTACTGAGGAAGGAAGCTAAAAATGATGTAAGGATATACGAAGTTCAGGAATTAAATGGTAATGAAGCCCTACAGCTCTTCCATTTGAATGCTTCCACTGAGATGTGTTCTAGAGGAAACTTTATTTTTTTAAGAGGGCTGGTAGATTATGCTTCAGGCATTCCGTTGGCACTTAAAATTTGGGGTTCCTTATTCCGTAGATGCAAGAACATGAAAGAAAGGGAAAATTTTTTGGTTAAATTGAAAACGTATCCCAACGAAAAGCTTCAGAATGTATATAGAGTTAGTTATGATGTATTAGAAGAAAACGAGAGGGAGATATTTCTTAGTATTGCATGTTTTCATAAAAACGATTTTATCCATGATGCAAAAAGACAACTAGATGCATGTGGTTTGTTTGCGGATAGTGGAATCGAAGCTCTCATTGATATGTCTCTCATATCAATCAAAAGTGGTCTACTTTGGATGCATGATGTGATACAAGAAATGGGTTGGGAAATTGTTCGCAAGGAATGTCCTGAAGAGCCTGGAAAGCGCAGTAGGTTGTATACTCCTAATGATGTCCATCATGTGTTGGAAAAGAACACGGGAACTGAAAAAGTTCAAGGCATATCCGTAAGACTGAATAGCGCCGAGGAGCAAACCTGGACTCAACTCACTCAAGCCTTGGTGAAGATGTATAATCTTAAATTCCTGAACTTTTACGGATATTTTTCACAGTACTGGAATCTTCAAGATCTTGAGTCCCTTCCTAATGCACTTAGATATCTCTGCTGGCCCGAATACCCTTTAAAATCTTTGCCATCAAAGTTCTCTTTGGACAATCTTGTTGAGCTTCTAATGCCCCATAGCCAACTGCAGAGACTTTGGAATGAAAGCCAACAGATTCTTAAGAACTTAAAAAGGATCGATCTTAGTGACTCCAAGCAGCTAGTTGAAGTTCCAGATCTCTCTAAGAGTGTAAATATTAAGAGTATAGATCTTCGAGGCTGTACACGGTTGGTTGAAGTTCCCCCTTATTTTCAAAATCTTCCCAAGCTTACCTCTCTGAATCTGGGTCATTGCTCGAGTCTTAAGATTTGTTCAGAGATCCCAAGAAATATGAAATTCTTAGTGTTAGAAAGTACTGCAATAGAAGAATTGCCTTCATCAATATGGTCTCATAAAAATCTTGTTCAGTTGAATCTTGAAAGGTGTGAGGGCTTGAAGAATCTTCCAAACAGCATTTGGAAGCTTAACTCCCTCACATCTTTTAATTTGTGTTGGACAGGTATAGAAGGATTGCCCTCATCAATCGAGTGTTTCTCGAACAGCGTCGTTTCAATTCAACTGTACTATTGCAGAAGGTTGGTGAGTCTCCCAACCAGCATTTGTAAGTTGAATTGTCTCTCGAGACTTTCTCTTGAAGGTTGCTCTAGCTTCAAAAACTTCCCAGAAATCTTGGAGCCTCTGGAAAGTCTTAAGTATCTTAATTTAGTAGGAACAGATATTAAAGAGCTACCCTCTTCGATCCAAAATTTAGTTGGGCTTAAAACTTTAACCTTATCCAGGTGCCAGAGCCTCGAGTCTGTCCCAAATAGCATCTACTATCTAAGCCTTTTGAATTTCCAAGTTGATGGCTGCTGCAGTCTAAAAGCGTTGCCTCACTCGTCCATCATTTTGTGGTCTTTGGTACATTGTCTAGATTTCAAAGGCTGCAATATATTTGAAGAAATCCCTGACTGCATCTGTAGCTCAACCTCGTTGATTGAACTAGATCTGAGGGATAGCATGATCAAGAGTATTCCTTCAACCATCAAACAACCGTCTAGGCTGAGGGTCCTAAACGTAAGCAATTGCAAGCGCCTTGAATCTTTACCGGACCTTCCTTGTCTTAGACAGTTAAACGCAAGTGGCTGCACGAAACTGAAAACAGTGTCATTCTCGATGACTGCACTCACACAAGGCCTGGATCAAGTATGTGAAGATGCAAGGCTATACCTTGATGAGAGACATGAGTTATACAATTGCGTAAATTTGGATGAGAATGCAAGGAGCAACATAATGGATGATGCACATCTTCGAATTATACACATGGCAACTGCTAATTATCATGTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACAGACACAGAAAAACACAAGCACACTCCCTTACTTCTGTTAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

1068

Amino Acids

121.99

Weight (kDa)

6.98

Isoelectric Point (pI)

45.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 14 - 190 1.1e-53 TIR domain
TIR_2 PF13676 16 - 138 1.6e-14 TIR domain
NB-ARC PF00931 217 - 371 4.4e-16 NB-ARC domain
WHD_ROQ1 PF23282 443 - 512 1.2e-19 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 797 - 877 1.5e-09 Leucine-rich repeat region
LRR_13 PF23286 803 - 983 4e-13 Disease resistance protein RPS4B-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 623
Acc36I ACCTGC 1 cut(s) 181
AccB1I GGYRCC 1 cut(s) 2577
AccBSI CCGCTC 1 cut(s) 156
AccI GTMKAC 3 cut(s) 23, 1483, 1574
AciI CCGC 4 cut(s) 76, 156, 629, 1427
AclI AACGTT 2 cut(s) 391, 829
AclWI GGATC 7 cut(s) 323, 543, 865, 1940, 2110, 2530, 2985
AcsI RAATTY 7 cut(s) 1203, 1252, 1715, 2132, 2542, 2629, 3040
AcuI CTGAAG 4 cut(s) 910, 1164, 1277, 1566
AfaI GTAC 6 cut(s) 649, 1748, 2020, 2152, 2360, 2700
AfiI CCNNNNNNNGG 3 cut(s) 854, 892, 2574
AflII CTTAAG 6 cut(s) 101, 149, 419, 1916, 2099, 2486
AhlI ACTAGT 1 cut(s) 479
AjnI CCWGG 5 cut(s) 897, 1552, 1670, 2573, 2973
AjuI GAANNNNNNNTTGG 2 cut(s) 948, 980
AloI GAACNNNNNNTCC 2 cut(s) 942, 974
Alw26I GTCTC 8 cut(s) 1464, 1882, 2190, 2387, 2413, 2417, 3010, 3127
AlwI GGATC 7 cut(s) 323, 543, 865, 1940, 2110, 2530, 2985
Ama87I CYCGRG 3 cut(s) 2092, 2416, 2588
AoxI GGCC 2 cut(s) 1802, 2971
ApeKI GCWGC 7 cut(s) 365, 368, 1954, 2646, 2649, 2721, 2922
ApoI RAATTY 7 cut(s) 1203, 1252, 1715, 2132, 2542, 2629, 3040
Asp700I GAANNNNTTC 6 cut(s) 804, 923, 957, 1290, 1527, 1626
AspLEI GCGC 3 cut(s) 1563, 1658, 2871
AspS9I GGNCC 5 cut(s) 170, 895, 1803, 2845, 2887
AsuHPI GGTGA 3 cut(s) 466, 1708, 2389
AsuII TTCGAA 1 cut(s) 3088
AvaI CYCGRG 3 cut(s) 2092, 2416, 2588
AvaII GGWCC 4 cut(s) 170, 895, 2845, 2887
BanI GGYRCC 1 cut(s) 2577
BarI GAAGNNNNNNTAC 2 cut(s) 32, 64
BbsI GAAGAC 1 cut(s) 40
BbvCI CCTCAGC 1 cut(s) 2840
BbvI GCAGC 7 cut(s) 355, 377, 1966, 2633, 2636, 2708, 2909
BceAI ACGGC 1 cut(s) 634
BcgI CGANNNNNNTGC 4 cut(s) 215, 249, 518, 552
BciT130I CCWGG 5 cut(s) 899, 1554, 1672, 2575, 2975
BciVI GTATCC 1 cut(s) 1287
BclI TGATCA 1 cut(s) 2799
BcoDI GTCTC 8 cut(s) 1464, 1882, 2190, 2387, 2413, 2417, 3010, 3127
BcuI ACTAGT 1 cut(s) 479
BfaI CTAG 9 cut(s) 480, 996, 1137, 1406, 1958, 2442, 2708, 2780, 2835
BfmI CTRYAG 5 cut(s) 852, 1097, 1883, 2650, 2755
BfoI RGCGCY 2 cut(s) 1659, 2872
BfrI CTTAAG 6 cut(s) 101, 149, 419, 1916, 2099, 2486
BfuAI ACCTGC 1 cut(s) 181
BfuI GTATCC 1 cut(s) 1287
BglII AGATCT 4 cut(s) 1762, 1972, 2005, 2782
BisI GCNGC 7 cut(s) 366, 369, 1955, 2647, 2650, 2722, 2923
BlsI GCNGC 7 cut(s) 367, 370, 1956, 2648, 2651, 2723, 2924
BmcAI AGTACT 2 cut(s) 1748, 2152
Bme1390I CCNGG 5 cut(s) 899, 1554, 1672, 2575, 2975
Bme18I GGWCC 4 cut(s) 170, 895, 2845, 2887
BmeT110I CYCGRG 3 cut(s) 2092, 2416, 2588
BmgT120I GGNCC 5 cut(s) 170, 895, 1803, 2845, 2887
BmiI GGNNCC 4 cut(s) 1213, 2472, 2579, 2846
BmrFI CCNGG 5 cut(s) 899, 1554, 1672, 2575, 2975
BpiI GAAGAC 1 cut(s) 40
BplI GAGNNNNNCTC 6 cut(s) 2315, 2347, 2410, 2442, 2513, 2545
Bpu10I CCTNAGC 1 cut(s) 2840
Bpu14I TTCGAA 1 cut(s) 3088
BpuEI CTTGAG 2 cut(s) 1671, 1787
Bsa29I ATCGAT 3 cut(s) 126, 138, 1935
BsaBI GATNNNNATC 2 cut(s) 1590, 3081
BsaI GGTCTC 1 cut(s) 2190
BsaJI CCNNGG 2 cut(s) 1659, 1692
BsaWI WCCGGW 1 cut(s) 2884
BsaXI ACNNNNNCTCC 2 cut(s) 942, 972
Bsc4I CCNNNNNNNGG 3 cut(s) 854, 892, 2574
Bse1I ACTGG 1 cut(s) 1754
Bse3DI GCAATG 1 cut(s) 2086
Bse8I GATNNNNATC 2 cut(s) 1590, 3081
BseBI CCWGG 5 cut(s) 899, 1554, 1672, 2575, 2975
BseCI ATCGAT 3 cut(s) 126, 138, 1935
BseDI CCNNGG 2 cut(s) 1659, 1692
BseGI GGATG 4 cut(s) 262, 1497, 3052, 3079
BseJI GATNNNNATC 2 cut(s) 1590, 3081
BseLI CCNNNNNNNGG 3 cut(s) 854, 892, 2574
BseMI GCAATG 1 cut(s) 2086
BseMII CTCAG 5 cut(s) 1022, 1027, 1116, 2777, 2831
BseNI ACTGG 1 cut(s) 1754
BseRI GAGGAG 1 cut(s) 1676
BseXI GCAGC 7 cut(s) 355, 377, 1966, 2633, 2636, 2708, 2909
BsgI GTGCAG 2 cut(s) 2908, 2943
BshFI GGCC 2 cut(s) 1804, 2973
BshNI GGYRCC 1 cut(s) 2577
BshVI ATCGAT 3 cut(s) 126, 138, 1935
BsiHKCI CYCGRG 3 cut(s) 2092, 2416, 2588
BsiSI CCGG 1 cut(s) 2885
BslFI GGGAC 4 cut(s) 611, 868, 1756, 2582
BslI CCNNNNNNNGG 3 cut(s) 854, 892, 2574
BsmAI GTCTC 8 cut(s) 1464, 1882, 2190, 2387, 2413, 2417, 3010, 3127
BsmFI GGGAC 4 cut(s) 611, 868, 1756, 2582
BsmI GAATGC 6 cut(s) 284, 371, 585, 1120, 1185, 3058
BsnI GGCC 2 cut(s) 1804, 2973
Bso31I GGTCTC 1 cut(s) 2190
BsoBI CYCGRG 3 cut(s) 2092, 2416, 2588
Bsp119I TTCGAA 1 cut(s) 3088
Bsp1407I TGTACA 1 cut(s) 2018
BspACI CCGC 4 cut(s) 76, 156, 629, 1427
BspANI GGCC 2 cut(s) 1804, 2973
BspCNI CTCAG 5 cut(s) 1023, 1026, 1117, 2778, 2832
BspDI ATCGAT 3 cut(s) 126, 138, 1935
BspLI GGNNCC 4 cut(s) 1213, 2472, 2579, 2846
BspMAI CTGCAG 2 cut(s) 1887, 2654
BspMI ACCTGC 1 cut(s) 181
BspPI GGATC 7 cut(s) 323, 543, 865, 1940, 2110, 2530, 2985
BspQI GCTCTTC 2 cut(s) 1109, 1542
BspT104I TTCGAA 1 cut(s) 3088
BspT107I GGYRCC 1 cut(s) 2577
BspTI CTTAAG 6 cut(s) 101, 149, 419, 1916, 2099, 2486
BspTNI GGTCTC 1 cut(s) 2190
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 2086
BsrGI TGTACA 1 cut(s) 2018
BsrI ACTGG 1 cut(s) 1754
BssECI CCNNGG 2 cut(s) 1659, 1692
BssNAI GTATAC 1 cut(s) 1575
BssT1I CCWWGG 1 cut(s) 1692
Bst1107I GTATAC 1 cut(s) 1575
Bst2UI CCWGG 5 cut(s) 899, 1554, 1672, 2575, 2975
Bst4CI ACNGT 7 cut(s) 652, 1746, 2025, 2358, 2832, 2907, 2941
Bst6I CTCTTC 4 cut(s) 724, 1109, 1542, 2536
BstAFI CTTAAG 6 cut(s) 101, 149, 419, 1916, 2099, 2486
BstAUI TGTACA 1 cut(s) 2018
BstBI TTCGAA 1 cut(s) 3088
BstC8I GCNNGC 3 cut(s) 432, 1802, 2867
BstENI CCTNNNNNAGG 1 cut(s) 2572
BstF5I GGATG 4 cut(s) 262, 1497, 3052, 3079
BstH2I RGCGCY 2 cut(s) 1659, 2872
BstHHI GCGC 3 cut(s) 1563, 1658, 2871
BstMAI GTCTC 8 cut(s) 1464, 1882, 2190, 2387, 2413, 2417, 3010, 3127
BstMWI GCNNNNNNNGC 5 cut(s) 374, 618, 1558, 1867, 2757
BstNI CCWGG 5 cut(s) 899, 1554, 1672, 2575, 2975
BstNSI RCATGY 4 cut(s) 341, 434, 1365, 1416
BstSCI CCNGG 5 cut(s) 897, 1552, 1670, 2573, 2973
BstSFI CTRYAG 5 cut(s) 852, 1097, 1883, 2650, 2755
BstV1I GCAGC 7 cut(s) 355, 377, 1966, 2633, 2636, 2708, 2909
BstV2I GAAGAC 1 cut(s) 40
BstX2I RGATCY 6 cut(s) 328, 1762, 1972, 2005, 2115, 2782
BstXI CCANNNNNNTGG 1 cut(s) 2642
BstYI RGATCY 6 cut(s) 328, 1762, 1972, 2005, 2115, 2782
BstZ17I GTATAC 1 cut(s) 1575
Bsu15I ATCGAT 3 cut(s) 126, 138, 1935
BsuI GTATCC 1 cut(s) 1287
BsuRI GGCC 2 cut(s) 1804, 2973
BsuTUI ATCGAT 3 cut(s) 126, 138, 1935
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 4 cut(s) 262, 1497, 3052, 3079
BtsIMutI CAGTG 2 cut(s) 1122, 2946
BveI ACCTGC 1 cut(s) 181
Cac8I GCNNGC 3 cut(s) 432, 1802, 2867
CfoI GCGC 3 cut(s) 1563, 1658, 2871
Cfr13I GGNCC 5 cut(s) 170, 895, 1803, 2845, 2887
ClaI ATCGAT 3 cut(s) 126, 138, 1935
CseI GACGC 1 cut(s) 2329
Csp6I GTAC 6 cut(s) 648, 1747, 2019, 2151, 2359, 2699
CviQI GTAC 6 cut(s) 648, 1747, 2019, 2151, 2359, 2699
DraI TTTAAA 1 cut(s) 1818
DrdI GACNNNNNNGTC 1 cut(s) 623
DseDI GACNNNNNNGTC 1 cut(s) 623
Eam1104I CTCTTC 4 cut(s) 724, 1109, 1542, 2536
EarI CTCTTC 4 cut(s) 724, 1109, 1542, 2536
Eco130I CCWWGG 1 cut(s) 1692
Eco147I AGGCCT 1 cut(s) 2973
Eco31I GGTCTC 1 cut(s) 2190
Eco32I GATATC 2 cut(s) 293, 1793
Eco47I GGWCC 4 cut(s) 170, 895, 2845, 2887
Eco57I CTGAAG 4 cut(s) 910, 1164, 1277, 1566
Eco88I CYCGRG 3 cut(s) 2092, 2416, 2588
EcoNI CCTNNNNNAGG 1 cut(s) 2572
EcoO109I RGGNCCY 2 cut(s) 895, 2845
EcoRII CCWGG 5 cut(s) 897, 1552, 1670, 2573, 2973
EcoRV GATATC 2 cut(s) 293, 1793
EcoT14I CCWWGG 1 cut(s) 1692
EcoT22I ATGCAT 3 cut(s) 614, 1414, 1497
ErhI CCWWGG 1 cut(s) 1692
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 4 cut(s) 611, 868, 1756, 2582
FauI CCCGC 2 cut(s) 83, 636
FbaI TGATCA 1 cut(s) 2799
FblI GTMKAC 3 cut(s) 23, 1483, 1574
Fnu4HI GCNGC 7 cut(s) 366, 369, 1955, 2647, 2650, 2722, 2923
FokI GGATG 4 cut(s) 269, 1504, 3059, 3086
Fsp4HI GCNGC 7 cut(s) 366, 369, 1955, 2647, 2650, 2722, 2923
FspBI CTAG 9 cut(s) 480, 996, 1137, 1406, 1958, 2442, 2708, 2780, 2835
GlaI GCGC 3 cut(s) 1562, 1657, 2870
GluI GCNGC 7 cut(s) 366, 369, 1955, 2647, 2650, 2722, 2923
HaeII RGCGCY 2 cut(s) 1659, 2872
HaeIII GGCC 2 cut(s) 1804, 2973
HapII CCGG 1 cut(s) 2885
HgaI GACGC 1 cut(s) 2329
HhaI GCGC 3 cut(s) 1563, 1658, 2871
Hin6I GCGC 3 cut(s) 1561, 1656, 2869
HinP1I GCGC 3 cut(s) 1561, 1656, 2869
HindIII AAGCTT 3 cut(s) 1289, 2063, 2258
HpaII CCGG 1 cut(s) 2885
HphI GGTGA 3 cut(s) 466, 1708, 2389
Hpy166II GTNNAC 6 cut(s) 24, 542, 779, 1484, 1575, 2021
Hpy8I GTNNAC 6 cut(s) 24, 542, 779, 1484, 1575, 2021
Hpy99I CGWCG 1 cut(s) 2345
HpyAV CCTTC 9 cut(s) 653, 1030, 1784, 2181, 2297, 2364, 2426, 2823, 2900
HpyCH4III ACNGT 7 cut(s) 652, 1746, 2025, 2358, 2832, 2907, 2941
HpyCH4IV ACGT 4 cut(s) 391, 829, 1274, 2853
HpyF10VI GCNNNNNNNGC 5 cut(s) 374, 618, 1558, 1867, 2757
HpySE526I ACGT 4 cut(s) 391, 829, 1274, 2853
HspAI GCGC 3 cut(s) 1561, 1656, 2869
Ksp22I TGATCA 1 cut(s) 2799
LguI GCTCTTC 2 cut(s) 1109, 1542
LmnI GCTCC 4 cut(s) 937, 1663, 2470, 3060
Lsp1109I GCAGC 7 cut(s) 355, 377, 1966, 2633, 2636, 2708, 2909
MaeI CTAG 9 cut(s) 480, 996, 1137, 1406, 1958, 2442, 2708, 2780, 2835
MaeII ACGT 4 cut(s) 391, 829, 1274, 2853
MaeIII GTNAC 2 cut(s) 344, 1943
MbiI CCGCTC 1 cut(s) 156
MfeI CAATTG 3 cut(s) 932, 2860, 3031
MflI RGATCY 6 cut(s) 328, 1762, 1972, 2005, 2115, 2782
MlyI GAGTC 9 cut(s) 365, 461, 708, 1669, 1778, 1940, 2104, 2389, 2600
MmeI TCCRAC 5 cut(s) 513, 550, 928, 1581, 2270
Mph1103I ATGCAT 3 cut(s) 614, 1414, 1497
MroXI GAANNNNTTC 6 cut(s) 804, 923, 957, 1290, 1527, 1626
MslI CAYNNNNRTG 5 cut(s) 273, 1113, 1127, 1454, 2179
MspA1I CMGCKG 1 cut(s) 368
MspCI CTTAAG 6 cut(s) 101, 149, 419, 1916, 2099, 2486
MspI CCGG 1 cut(s) 2885
MspR9I CCNGG 5 cut(s) 899, 1554, 1672, 2575, 2975
MunI CAATTG 3 cut(s) 932, 2860, 3031
Mva1269I GAATGC 6 cut(s) 284, 371, 585, 1120, 1185, 3058
MvaI CCWGG 5 cut(s) 899, 1554, 1672, 2575, 2975
MwoI GCNNNNNNNGC 5 cut(s) 374, 618, 1558, 1867, 2757
NlaIV GGNNCC 4 cut(s) 1213, 2472, 2579, 2846
NmeAIII GCCGAG 1 cut(s) 1684
NmuCI GTSAC 1 cut(s) 1943
NsiI ATGCAT 3 cut(s) 614, 1414, 1497
NspI RCATGY 4 cut(s) 341, 434, 1365, 1416
NspV TTCGAA 1 cut(s) 3088
PaeI GCATGC 1 cut(s) 434
PaeR7I CTCGAG 3 cut(s) 2092, 2416, 2588
PceI AGGCCT 1 cut(s) 2973
PciSI GCTCTTC 2 cut(s) 1109, 1542
PcsI WCGNNNNNNNCGW 1 cut(s) 976
PctI GAATGC 6 cut(s) 284, 371, 585, 1120, 1185, 3058
PdmI GAANNNNTTC 6 cut(s) 804, 923, 957, 1290, 1527, 1626
PkrI GCNGC 7 cut(s) 367, 370, 1956, 2648, 2651, 2723, 2924
PleI GAGTC 9 cut(s) 364, 461, 708, 1669, 1777, 1940, 2103, 2388, 2599
PpsI GAGTC 9 cut(s) 364, 461, 708, 1669, 1777, 1940, 2103, 2388, 2599
PpuMI RGGWCCY 2 cut(s) 895, 2845
Psp1406I AACGTT 2 cut(s) 391, 829
Psp5II RGGWCCY 2 cut(s) 895, 2845
Psp6I CCWGG 5 cut(s) 897, 1552, 1670, 2573, 2973
PspGI CCWGG 5 cut(s) 897, 1552, 1670, 2573, 2973
PspN4I GGNNCC 4 cut(s) 1213, 2472, 2579, 2846
PspPI GGNCC 5 cut(s) 170, 895, 1803, 2845, 2887
PspPPI RGGWCCY 2 cut(s) 895, 2845
PspXI VCTCGAGB 2 cut(s) 2092, 2588
PstI CTGCAG 2 cut(s) 1887, 2654
PsuI RGATCY 6 cut(s) 328, 1762, 1972, 2005, 2115, 2782
PvuII CAGCTG 1 cut(s) 368
RsaI GTAC 6 cut(s) 649, 1748, 2020, 2152, 2360, 2700
RsaNI GTAC 6 cut(s) 648, 1747, 2019, 2151, 2359, 2699
RseI CAYNNNNRTG 5 cut(s) 273, 1113, 1127, 1454, 2179
SapI GCTCTTC 2 cut(s) 1109, 1542
SatI GCNGC 7 cut(s) 366, 369, 1955, 2647, 2650, 2722, 2923
Sau96I GGNCC 5 cut(s) 170, 895, 1803, 2845, 2887
ScaI AGTACT 2 cut(s) 1748, 2152
SchI GAGTC 9 cut(s) 365, 461, 708, 1669, 1778, 1940, 2104, 2389, 2600
ScrFI CCNGG 5 cut(s) 899, 1554, 1672, 2575, 2975
SfcI CTRYAG 5 cut(s) 852, 1097, 1883, 2650, 2755
Sfr274I CTCGAG 3 cut(s) 2092, 2416, 2588
SfuI TTCGAA 1 cut(s) 3088
SinI GGWCC 4 cut(s) 170, 895, 2845, 2887
SlaI CTCGAG 3 cut(s) 2092, 2416, 2588
SmiMI CAYNNNNRTG 5 cut(s) 273, 1113, 1127, 1454, 2179
SpeI ACTAGT 1 cut(s) 479
SphI GCATGC 1 cut(s) 434
SseBI AGGCCT 1 cut(s) 2973
SsiI CCGC 4 cut(s) 76, 156, 629, 1427
SspI AATATT 1 cut(s) 1993
SspMI CTAG 9 cut(s) 480, 996, 1137, 1406, 1958, 2442, 2708, 2780, 2835
StuI AGGCCT 1 cut(s) 2973
StyD4I CCNGG 5 cut(s) 897, 1552, 1670, 2573, 2973
StyI CCWWGG 1 cut(s) 1692
TaaI ACNGT 7 cut(s) 652, 1746, 2025, 2358, 2832, 2907, 2941
TaiI ACGT 4 cut(s) 394, 832, 1277, 2856
TaqII GACCGA 1 cut(s) 856
TatI WGTACW 4 cut(s) 1746, 2018, 2150, 2358
TscAI CASTG 2 cut(s) 1129, 2946
TseFI GTSAC 1 cut(s) 1943
TseI GCWGC 7 cut(s) 365, 368, 1954, 2646, 2649, 2721, 2922
Tsp45I GTSAC 1 cut(s) 1943
TspGWI ACGGA 4 cut(s) 1179, 1211, 1630, 1746
TspRI CASTG 2 cut(s) 1129, 2946
Vha464I CTTAAG 6 cut(s) 101, 149, 419, 1916, 2099, 2486
VpaK11BI GGWCC 4 cut(s) 170, 895, 2845, 2887
XagI CCTNNNNNAGG 1 cut(s) 2572
XapI RAATTY 7 cut(s) 1203, 1252, 1715, 2132, 2542, 2629, 3040
XbaI TCTAGA 2 cut(s) 1136, 2707
XceI RCATGY 4 cut(s) 341, 434, 1365, 1416
XcmI CCANNNNNNNNNTGG 2 cut(s) 2250, 2546
XhoI CTCGAG 3 cut(s) 2092, 2416, 2588
XmiI GTMKAC 3 cut(s) 23, 1483, 1574
XmnI GAANNNNTTC 6 cut(s) 804, 923, 957, 1290, 1527, 1626
XspI CTAG 9 cut(s) 480, 996, 1137, 1406, 1958, 2442, 2708, 2780, 2835
ZrmI AGTACT 2 cut(s) 1748, 2152
Zsp2I ATGCAT 3 cut(s) 614, 1414, 1497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.