Rh4DG338900

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000074
Physical Location & Seq
Reverse (-)
56130209 .. 56135083
4875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG338900.1

Sequence Viewer

Length: 2418 bp
ATGGATGGGAGCGGCATGCGATTCAGTGAACCGAATTACCATGGTTGGTCTGTAGATGAGGATGACTTTTCAGATGAGTACGAAGAGTTATTCTCGGATGAGGAAGCTTCGCAGAGTGCAAATATGGATGAGAATCTGGATTGTCTACACTTCAATGGCAAGAAGTATGAAGATCTTAGATCCTCTGATATGATTGGTGTTGAGTTTAGCAGCGTCAAGGCAGTGGACACATTCTATGCTTACTATTCACTTGCCATGGGCTTCAGTTTCCGAAAGGAAAAGTTGTGTCGAAATGCAGCACAAGTGGTGGTGAGAAGACAGTTAGTGTGTTCAAAGGAGGGTGAGAGAAAAAAAAGGGGCAAGTCTGATCCTAGTTTTGCATCAGAAATCATTTCATGCGCCAAAAATCTTAGTCCACCTCATGGGACAAAACCGGTCTGCAAGAGGAAGACAGTTAACCAGAAACCAATCGTGGAAGATGCTGATACAAGAAGTATGAAACGTTCTGGGAAGCAGTTTGGTGATGGTGAACATGAAAAAAAAAGGCAGCGCCCTCCACAAAGAAATATTACCAGAGGTAATTGTCAAGCCCGTATCACAGCACGCCGATGCAAGGAAAATGGTGTCTTCCGTGTGGTCCAATTCATCACCGAACATAACCACGACCTTGCTACAACAGAGTTTGTTCCCTTCCTCCGATCCCACCGCAAGGTTCGGGACCATGACGTTGCTCAGGTAACAGCACTTAAGAAAGTCTCTGTTGGTACTTGCCGGGCTTATGAGTTGTTGGTCCACCAAGCCGGTGGCCATGAATTTGTTGGTTTCCTCATAAAAGATTTGTATAACAAGATGGACTCTGAAAGGAAGGAACTCATGGTTGATGGTGACGCCCAGTCCACAATCAGTTTCATGAATTTGAAAGCATCTAAAGAGGCGGAGTTTTTCTGTTTGTTCAGTGTTGATGCCGAAGGCCGGCTGGTGTTGCCACGCATGGACAAGACAATTGAACGCATCAGGTTTAATGGGCTTAACGATGACTTCAAATCAATGAACTCGCACCCGGTTATTGGCAGCCACATGCGGTGTATTCAACAGCAGGTTAGTGTAAGGTTTACCCACGACGTATTCCTCCTCATAAAAGATCAAATTCTTTTTGAGTCAAAGTTTCTCGTTGCTGACCGTGTTCGTTATGAGAATCAAGGATCAACACTTCATCTTGTAACCCAATATGGTAAACCTGAAAGGACATGGCATGTGACACATTATCAAGGTAAGCCCGACCTTTCTTTCGTATGCTCATGTCACCTCTTTGAGTCGGATGGTATTCCTTGCTGCCACATCTTCACAGTCATGAAGACAATGAATATGACTACCCTTCCAGAATCTTTGGTTAATCAGAGGTGGACAAAACAGGCTTGTACCAAAGATACCAGCACCCTCAGTAGTGGAATAATGCCCGCCAAGGATTTGCAGCTTGCCCGTTATGGGCAAATGATGGGTGATTGTGCTCAAATCTGTCATTCAGCTTCATTCTCAGATGAGGCATATGAAGAAATCACTAACTGTCTTAGTCAACTAATGGTTAGGTCCAAAACATTCAAGAGATGCAAAGATAGTCAGCCACCAGAAACTGTTGATGGTCTACACCCTAATGTGATTAGGGATCCGAACGTGTGCAAAACCAAGGGCACTCATTCCAGGCATTCCACCAGTGTTGAGGTTGAGAGGGATCAGCCAGGAGGGAGGGGTTGTGGATTTTGCAGCCGGCCAGGTCATAATGTACGCACTTGTGCACTGCTAGCTGCACAAAATGCGGGGGAAAAGGATGAACCTCGTCTCCAAAAAGCACGGAACAGCTCCATTGATGCTAGCTTGCAGTCTACTCCGGGTTCCAATAGATACAAGGGTCCAGCTGGTTTCACAAACATTGGTCAGGATGATGGTTTCACAACATGTTGCATCATGTTGAAGAATCTAGGACGTTTGACTTTTTTACCGGTTGTGATGCTTGGACTAGATGCGGCTGGTAAAACAACCATCCTTTACAAACTGCATATTGGAGAAGTCTTGTCAACTGTTCCTACAATAGGTTTTAATGTGGAAAAAGTTCAGTACAAGAATGTGATGTTCACAGTTTGGGATGTTGGTGGGCAAGAGAAACTAAGGCCGCTCTGGAGGCATTACTTTAATAATACGGATGGACTGCCTGCTGGAGGTCAGAGTAAAATCTTGGTCTGTGAACATGTTCTCAAGACTTCCAAGAAAATTCATTACCAGAAGTTTGCAGGACTGACAGGCAATGAAATAGTTGTGGTTGGCAATGGCCCAAGGCAGCAATACTGCAAACAACTTCATGAATTGCAGAGTCCTAGCCATCAAGCAACCATCTTCTTCACCATTGAGGATCAACAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

805

Amino Acids

90.82

Weight (kDa)

8.62

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 77 - 122 1.3e-06 FAR1 DNA-binding domain
FAR1 PF03101 172 - 224 2.2e-07 FAR1 DNA-binding domain
Arf PF00025 666 - 735 5.4e-32 ADP-ribosylation factor family
Roc PF08477 667 - 734 3.3e-07 Ras of Complex, Roc, domain of DAPkinase
DUF4057 PF13266 735 - 770 5.6e-06 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1087
AccB7I CCANNNNNTGG 1 cut(s) 422
AccBSI CCGCTC 2 cut(s) 12, 2170
AccI GTMKAC 3 cut(s) 145, 1642, 1880
AciI CCGC 8 cut(s) 12, 706, 935, 1081, 1458, 1814, 2021, 2168
AclI AACGTT 1 cut(s) 502
AclWI GGATC 8 cut(s) 174, 362, 693, 1210, 1658, 1671, 1737, 2412
AcoI YGGCCR 2 cut(s) 805, 1766
AcsI RAATTY 4 cut(s) 812, 913, 1146, 2265
AcuI CTGAAG 1 cut(s) 247
AcyI GRCGYC 1 cut(s) 888
AfaI GTAC 5 cut(s) 80, 766, 1420, 1782, 2114
AfiI CCNNNNNNNGG 8 cut(s) 422, 613, 709, 972, 1067, 1485, 2087, 2213
AflII CTTAAG 1 cut(s) 746
AflIII ACRYGT 3 cut(s) 1671, 1952, 2242
AgeI ACCGGT 2 cut(s) 433, 1996
AgsI TTSAA 8 cut(s) 154, 333, 919, 1007, 1042, 1091, 1600, 1969
AhdI GACNNNNNGTC 1 cut(s) 892
AjnI CCWGG 3 cut(s) 1697, 1735, 1768
AloI GAACNNNNNNTCC 2 cut(s) 1821, 1853
AluBI AGCT 7 cut(s) 107, 1474, 1526, 1802, 1857, 1872, 1913
AluI AGCT 7 cut(s) 107, 1474, 1526, 1802, 1857, 1872, 1913
Alw21I GWGCWC 2 cut(s) 1510, 1795
Alw26I GTCTC 2 cut(s) 760, 1841
Alw44I GTGCAC 1 cut(s) 1791
AlwI GGATC 8 cut(s) 174, 362, 693, 1210, 1658, 1671, 1737, 2412
AlwNI CAGNNNCTG 1 cut(s) 1631
AoxI GGCC 5 cut(s) 805, 970, 1766, 2165, 2323
ApaLI GTGCAC 1 cut(s) 1791
ApeKI GCWGC 9 cut(s) 210, 296, 547, 1071, 1332, 1471, 1761, 1802, 2332
ApoI RAATTY 4 cut(s) 812, 913, 1146, 2265
ArsI GACNNNNNNTTYG 2 cut(s) 1271, 1303
AsiGI ACCGGT 2 cut(s) 433, 1996
Asp700I GAANNNNTTC 2 cut(s) 2106, 2244
AspLEI GCGC 2 cut(s) 401, 552
AspS9I GGNCC 6 cut(s) 637, 718, 790, 1587, 1907, 2324
AsuC2I CCSGG 3 cut(s) 773, 1061, 1887
AsuHPI GGTGA 9 cut(s) 322, 353, 533, 539, 640, 896, 1295, 1511, 2386
AsuNHI GCTAGC 2 cut(s) 1798, 1868
AvaII GGWCC 5 cut(s) 637, 718, 790, 1587, 1907
BaeGI GKGCMC 2 cut(s) 1691, 1795
BaeI ACNNNNGTAYC 2 cut(s) 1891, 1924
BalI TGGCCA 1 cut(s) 807
BamHI GGATCC 1 cut(s) 1663
BbsI GAAGAC 4 cut(s) 322, 455, 619, 1361
Bbv12I GWGCWC 2 cut(s) 1510, 1795
BbvI GCAGC 9 cut(s) 222, 308, 559, 1083, 1319, 1483, 1773, 1789, 2344
BciT130I CCWGG 3 cut(s) 1699, 1737, 1770
BcnI CCSGG 3 cut(s) 773, 1061, 1887
BcoDI GTCTC 2 cut(s) 760, 1841
BfaI CTAG 7 cut(s) 372, 1799, 1869, 1976, 2015, 2370, 2416
BfmI CTRYAG 1 cut(s) 51
BfoI RGCGCY 1 cut(s) 553
BfrI CTTAAG 1 cut(s) 746
BfuAI ACCTGC 1 cut(s) 1087
BglII AGATCT 1 cut(s) 172
Bme1390I CCNGG 6 cut(s) 773, 1061, 1699, 1737, 1770, 1887
Bme18I GGWCC 5 cut(s) 637, 718, 790, 1587, 1907
BmeRI GACNNNNNGTC 1 cut(s) 892
BmgT120I GGNCC 6 cut(s) 637, 718, 790, 1587, 1907, 2324
BmiI GGNNCC 4 cut(s) 719, 1665, 1891, 1908
BmrFI CCNGG 6 cut(s) 773, 1061, 1699, 1737, 1770, 1887
BmrI ACTGGG 1 cut(s) 886
BmtI GCTAGC 2 cut(s) 1802, 1872
BmuI ACTGGG 1 cut(s) 886
BpiI GAAGAC 4 cut(s) 322, 455, 619, 1361
BplI GAGNNNNNCTC 2 cut(s) 77, 109
BpmI CTGGAG 2 cut(s) 2194, 2232
Bpu10I CCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 2234
BpuMI CCSGG 3 cut(s) 773, 1061, 1887
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 888
BsaJI CCNNGG 5 cut(s) 40, 255, 1461, 1683, 2327
BsaWI WCCGGW 2 cut(s) 433, 1996
BsaXI ACNNNNNCTCC 4 cut(s) 1735, 1765, 1821, 1851
Bsc4I CCNNNNNNNGG 8 cut(s) 422, 613, 709, 972, 1067, 1485, 2087, 2213
Bse118I RCCGGY 5 cut(s) 433, 800, 972, 1764, 1996
Bse1I ACTGG 2 cut(s) 892, 1710
Bse3DI GCAATG 2 cut(s) 2305, 2326
Bse8I GATNNNNATC 1 cut(s) 132
BseBI CCWGG 3 cut(s) 1699, 1737, 1770
BseDI CCNNGG 5 cut(s) 40, 255, 1461, 1683, 2327
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 8 cut(s) 422, 613, 709, 972, 1067, 1485, 2087, 2213
BseMI GCAATG 2 cut(s) 2305, 2326
BseMII CTCAG 3 cut(s) 746, 1453, 1548
BseNI ACTGG 2 cut(s) 892, 1710
BseRI GAGGAG 1 cut(s) 1121
BseSI GKGCMC 2 cut(s) 1691, 1795
BseXI GCAGC 9 cut(s) 222, 308, 559, 1083, 1319, 1483, 1773, 1789, 2344
BsgI GTGCAG 1 cut(s) 1788
BshFI GGCC 5 cut(s) 807, 972, 1768, 2167, 2325
BshTI ACCGGT 2 cut(s) 433, 1996
BsiHKAI GWGCWC 2 cut(s) 1510, 1795
BsiSI CCGG 8 cut(s) 434, 772, 801, 973, 1061, 1765, 1886, 1997
BslFI GGGAC 2 cut(s) 439, 731
BslI CCNNNNNNNGG 8 cut(s) 422, 613, 709, 972, 1067, 1485, 2087, 2213
BsmAI GTCTC 2 cut(s) 760, 1841
BsmBI CGTCTC 1 cut(s) 1841
BsmFI GGGAC 2 cut(s) 439, 731
BsmI GAATGC 1 cut(s) 1702
BsnI GGCC 5 cut(s) 807, 972, 1768, 2167, 2325
Bsp1286I GDGCHC 3 cut(s) 1510, 1691, 1795
Bsp143I GATC 9 cut(s) 172, 179, 367, 698, 1141, 1202, 1663, 1729, 2404
Bsp19I CCATGG 2 cut(s) 40, 255
BspACI CCGC 8 cut(s) 12, 706, 935, 1081, 1458, 1814, 2021, 2168
BspANI GGCC 5 cut(s) 807, 972, 1768, 2167, 2325
BspCNI CTCAG 3 cut(s) 745, 1452, 1547
BspHI TCATGA 3 cut(s) 909, 1350, 2353
BspLI GGNNCC 4 cut(s) 719, 1665, 1891, 1908
BspMI ACCTGC 1 cut(s) 1087
BspOI GCTAGC 2 cut(s) 1802, 1872
BspPI GGATC 8 cut(s) 174, 362, 693, 1210, 1658, 1671, 1737, 2412
BspTI CTTAAG 1 cut(s) 746
BsrBI CCGCTC 2 cut(s) 12, 2170
BsrDI GCAATG 2 cut(s) 2305, 2326
BsrFI RCCGGY 5 cut(s) 433, 800, 972, 1764, 1996
BsrI ACTGG 2 cut(s) 892, 1710
BssAI RCCGGY 5 cut(s) 433, 800, 972, 1764, 1996
BssECI CCNNGG 5 cut(s) 40, 255, 1461, 1683, 2327
BssMI GATC 9 cut(s) 172, 179, 367, 698, 1141, 1202, 1663, 1729, 2404
BssNI GRCGYC 1 cut(s) 888
BssT1I CCWWGG 5 cut(s) 40, 255, 1461, 1683, 2327
Bst2UI CCWGG 3 cut(s) 1699, 1737, 1770
Bst4CI ACNGT 8 cut(s) 321, 454, 1181, 1348, 1565, 1633, 2077, 2134
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 888
BstAFI CTTAAG 1 cut(s) 746
BstAPI GCANNNNNTGC 1 cut(s) 1811
BstDEI CTNAG 7 cut(s) 176, 410, 732, 1439, 1534, 1568, 2162
BstDSI CCRYGG 2 cut(s) 40, 255
BstENI CCTNNNNNAGG 2 cut(s) 2085, 2211
BstH2I RGCGCY 1 cut(s) 553
BstHHI GCGC 2 cut(s) 401, 552
BstKTI GATC 9 cut(s) 175, 182, 370, 701, 1144, 1205, 1666, 1732, 2407
BstMAI GTCTC 2 cut(s) 760, 1841
BstMBI GATC 9 cut(s) 172, 179, 367, 698, 1141, 1202, 1663, 1729, 2404
BstMWI GCNNNNNNNGC 4 cut(s) 982, 1799, 1811, 2176
BstNI CCWGG 3 cut(s) 1699, 1737, 1770
BstNSI RCATGY 5 cut(s) 19, 1081, 1256, 1956, 2246
BstSCI CCNGG 6 cut(s) 771, 1059, 1697, 1735, 1768, 1885
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 2 cut(s) 1691, 1795
BstV1I GCAGC 9 cut(s) 222, 308, 559, 1083, 1319, 1483, 1773, 1789, 2344
BstV2I GAAGAC 4 cut(s) 322, 455, 619, 1361
BstX2I RGATCY 3 cut(s) 172, 179, 1663
BstXI CCANNNNNNTGG 1 cut(s) 803
BstYI RGATCY 3 cut(s) 172, 179, 1663
BsuRI GGCC 5 cut(s) 807, 972, 1768, 2167, 2325
BtgI CCRYGG 2 cut(s) 40, 255
BtsI GCAGTG 2 cut(s) 228, 1793
BtsIMutI CAGTG 5 cut(s) 31, 228, 961, 1717, 1793
BveI ACCTGC 1 cut(s) 1087
CaiI CAGNNNCTG 1 cut(s) 1631
CciI TCATGA 3 cut(s) 909, 1350, 2353
CfoI GCGC 2 cut(s) 401, 552
Cfr10I RCCGGY 5 cut(s) 433, 800, 972, 1764, 1996
Cfr13I GGNCC 6 cut(s) 637, 718, 790, 1587, 1907, 2324
CseI GACGC 2 cut(s) 202, 896
Csp6I GTAC 5 cut(s) 79, 765, 1419, 1781, 2113
CspAI ACCGGT 2 cut(s) 433, 1996
CspCI CAANNNNNGTGG 2 cut(s) 1696, 1731
CviQI GTAC 5 cut(s) 79, 765, 1419, 1781, 2113
DdeI CTNAG 7 cut(s) 176, 410, 732, 1439, 1534, 1568, 2162
DpnI GATC 9 cut(s) 174, 181, 369, 700, 1143, 1204, 1665, 1731, 2406
DpnII GATC 9 cut(s) 172, 179, 367, 698, 1141, 1202, 1663, 1729, 2404
DriI GACNNNNNGTC 1 cut(s) 892
EaeI YGGCCR 2 cut(s) 805, 1766
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 892
EarI CTCTTC 1 cut(s) 78
EciI GGCGGA 1 cut(s) 950
Eco130I CCWWGG 5 cut(s) 40, 255, 1461, 1683, 2327
Eco47I GGWCC 5 cut(s) 637, 718, 790, 1587, 1907
Eco57I CTGAAG 1 cut(s) 247
EcoNI CCTNNNNNAGG 2 cut(s) 2085, 2211
EcoRII CCWGG 3 cut(s) 1697, 1735, 1768
EcoT14I CCWWGG 5 cut(s) 40, 255, 1461, 1683, 2327
ErhI CCWWGG 5 cut(s) 40, 255, 1461, 1683, 2327
Esp3I CGTCTC 1 cut(s) 1841
FaqI GGGAC 2 cut(s) 439, 731
FauI CCCGC 2 cut(s) 1465, 1807
FauNDI CATATG 1 cut(s) 1546
FblI GTMKAC 3 cut(s) 145, 1642, 1880
FspBI CTAG 7 cut(s) 372, 1799, 1869, 1976, 2015, 2370, 2416
GlaI GCGC 2 cut(s) 400, 551
GsuI CTGGAG 2 cut(s) 2194, 2232
HaeII RGCGCY 1 cut(s) 553
HaeIII GGCC 5 cut(s) 807, 972, 1768, 2167, 2325
HapII CCGG 8 cut(s) 434, 772, 801, 973, 1061, 1765, 1886, 1997
HgaI GACGC 2 cut(s) 202, 896
HhaI GCGC 2 cut(s) 401, 552
Hin1I GRCGYC 1 cut(s) 888
Hin6I GCGC 2 cut(s) 399, 550
HinP1I GCGC 2 cut(s) 399, 550
HincII GTYRAC 3 cut(s) 457, 1574, 2073
HindII GTYRAC 3 cut(s) 457, 1574, 2073
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 9 cut(s) 21, 133, 854, 1157, 1195, 1313, 1382, 1972, 2365
HpaI GTTAAC 1 cut(s) 457
HpaII CCGG 8 cut(s) 434, 772, 801, 973, 1061, 1765, 1886, 1997
HphI GGTGA 9 cut(s) 322, 353, 533, 539, 640, 896, 1295, 1511, 2386
Hpy99I CGWCG 1 cut(s) 1124
HpyAV CCTTC 4 cut(s) 700, 859, 962, 1385
HpyCH4III ACNGT 8 cut(s) 321, 454, 1181, 1348, 1565, 1633, 2077, 2134
HpyCH4IV ACGT 5 cut(s) 502, 726, 1122, 1671, 1981
HpyF10VI GCNNNNNNNGC 4 cut(s) 982, 1799, 1811, 2176
HpyF3I CTNAG 7 cut(s) 176, 410, 732, 1439, 1534, 1568, 2162
HpySE526I ACGT 5 cut(s) 502, 726, 1122, 1671, 1981
Hsp92I GRCGYC 1 cut(s) 888
HspAI GCGC 2 cut(s) 399, 550
KroI GCCGGC 2 cut(s) 972, 1764
KroNI GCCGGC 2 cut(s) 974, 1766
KspAI GTTAAC 1 cut(s) 457
Kzo9I GATC 9 cut(s) 172, 179, 367, 698, 1141, 1202, 1663, 1729, 2404
LmnI GCTCC 2 cut(s) 9, 1862
Lsp1109I GCAGC 9 cut(s) 222, 308, 559, 1083, 1319, 1483, 1773, 1789, 2344
MaeI CTAG 7 cut(s) 372, 1799, 1869, 1976, 2015, 2370, 2416
MaeII ACGT 5 cut(s) 502, 726, 1122, 1671, 1981
MaeIII GTNAC 5 cut(s) 736, 884, 1219, 1255, 1301
MalI GATC 9 cut(s) 174, 181, 369, 700, 1143, 1204, 1665, 1731, 2406
MbiI CCGCTC 2 cut(s) 12, 2170
MboI GATC 9 cut(s) 172, 179, 367, 698, 1141, 1202, 1663, 1729, 2404
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 3 cut(s) 172, 179, 1663
MhlI GDGCHC 3 cut(s) 1510, 1691, 1795
MlsI TGGCCA 1 cut(s) 807
MluCI AATT 9 cut(s) 34, 580, 641, 812, 913, 1002, 1146, 2265, 2357
MluNI TGGCCA 1 cut(s) 807
MlyI GAGTC 4 cut(s) 848, 1166, 1322, 2374
MmeI TCCRAC 1 cut(s) 1296
Mox20I TGGCCA 1 cut(s) 807
MroNI GCCGGC 2 cut(s) 972, 1764
MroXI GAANNNNTTC 2 cut(s) 2106, 2244
MscI TGGCCA 1 cut(s) 807
MseI TTAA 7 cut(s) 456, 747, 1020, 1029, 1392, 2094, 2187
MslI CAYNNNNRTG 4 cut(s) 153, 607, 1349, 1650
Msp20I TGGCCA 1 cut(s) 807
MspA1I CMGCKG 1 cut(s) 1913
MspCI CTTAAG 1 cut(s) 746
MspI CCGG 8 cut(s) 434, 772, 801, 973, 1061, 1765, 1886, 1997
MspR9I CCNGG 6 cut(s) 773, 1061, 1699, 1737, 1770, 1887
MunI CAATTG 1 cut(s) 1002
Mva1269I GAATGC 1 cut(s) 1702
MvaI CCWGG 3 cut(s) 1699, 1737, 1770
MwoI GCNNNNNNNGC 4 cut(s) 982, 1799, 1811, 2176
NaeI GCCGGC 2 cut(s) 974, 1766
NciI CCSGG 3 cut(s) 773, 1061, 1887
NcoI CCATGG 2 cut(s) 40, 255
NdeI CATATG 1 cut(s) 1546
NdeII GATC 9 cut(s) 172, 179, 367, 698, 1141, 1202, 1663, 1729, 2404
NgoMIV GCCGGC 2 cut(s) 972, 1764
NheI GCTAGC 2 cut(s) 1798, 1868
NlaIV GGNNCC 4 cut(s) 719, 1665, 1891, 1908
NmuCI GTSAC 3 cut(s) 884, 1255, 1301
NspI RCATGY 5 cut(s) 19, 1081, 1256, 1956, 2246
PaeI GCATGC 1 cut(s) 19
PagI TCATGA 3 cut(s) 909, 1350, 2353
PciI ACATGT 2 cut(s) 1952, 2242
PctI GAATGC 1 cut(s) 1702
PdiI GCCGGC 2 cut(s) 974, 1766
PdmI GAANNNNTTC 2 cut(s) 2106, 2244
PfeI GAWTC 5 cut(s) 21, 133, 1195, 1382, 1972
PflMI CCANNNNNTGG 1 cut(s) 422
PinAI ACCGGT 2 cut(s) 433, 1996
PleI GAGTC 4 cut(s) 848, 1165, 1321, 2373
PpsI GAGTC 4 cut(s) 848, 1165, 1321, 2373
PscI ACATGT 2 cut(s) 1952, 2242
Psp1406I AACGTT 1 cut(s) 502
Psp6I CCWGG 3 cut(s) 1697, 1735, 1768
PspGI CCWGG 3 cut(s) 1697, 1735, 1768
PspN4I GGNNCC 4 cut(s) 719, 1665, 1891, 1908
PspPI GGNCC 6 cut(s) 637, 718, 790, 1587, 1907, 2324
PsrI GAACNNNNNNTAC 2 cut(s) 487, 519
PstNI CAGNNNCTG 1 cut(s) 1631
PsuI RGATCY 3 cut(s) 172, 179, 1663
PvuII CAGCTG 1 cut(s) 1913
RsaI GTAC 5 cut(s) 80, 766, 1420, 1782, 2114
RsaNI GTAC 5 cut(s) 79, 765, 1419, 1781, 2113
RseI CAYNNNNRTG 4 cut(s) 153, 607, 1349, 1650
SaqAI TTAA 7 cut(s) 456, 747, 1020, 1029, 1392, 2094, 2187
Sau3AI GATC 9 cut(s) 172, 179, 367, 698, 1141, 1202, 1663, 1729, 2404
Sau96I GGNCC 6 cut(s) 637, 718, 790, 1587, 1907, 2324
SchI GAGTC 4 cut(s) 848, 1166, 1322, 2374
ScrFI CCNGG 6 cut(s) 773, 1061, 1699, 1737, 1770, 1887
SduI GDGCHC 3 cut(s) 1510, 1691, 1795
SfcI CTRYAG 1 cut(s) 51
SinI GGWCC 5 cut(s) 637, 718, 790, 1587, 1907
SmiMI CAYNNNNRTG 4 cut(s) 153, 607, 1349, 1650
SmlI CTYRAG 2 cut(s) 746, 2249
SmoI CTYRAG 2 cut(s) 746, 2249
SphI GCATGC 1 cut(s) 19
Sse9I AATT 9 cut(s) 34, 580, 641, 812, 913, 1002, 1146, 2265, 2357
SsiI CCGC 8 cut(s) 12, 706, 935, 1081, 1458, 1814, 2021, 2168
SspI AATATT 1 cut(s) 568
SspMI CTAG 7 cut(s) 372, 1799, 1869, 1976, 2015, 2370, 2416
StyD4I CCNGG 6 cut(s) 771, 1059, 1697, 1735, 1768, 1885
StyI CCWWGG 5 cut(s) 40, 255, 1461, 1683, 2327
TaaI ACNGT 8 cut(s) 321, 454, 1181, 1348, 1565, 1633, 2077, 2134
TaiI ACGT 5 cut(s) 505, 729, 1125, 1674, 1984
TaqI TCGA 1 cut(s) 289
TasI AATT 9 cut(s) 34, 580, 641, 812, 913, 1002, 1146, 2265, 2357
TatI WGTACW 1 cut(s) 2112
TauI GCSGC 3 cut(s) 15, 2024, 2170
TfiI GAWTC 5 cut(s) 21, 133, 1195, 1382, 1972
Tru1I TTAA 7 cut(s) 456, 747, 1020, 1029, 1392, 2094, 2187
Tru9I TTAA 7 cut(s) 456, 747, 1020, 1029, 1392, 2094, 2187
TscAI CASTG 5 cut(s) 31, 228, 961, 1717, 1800
TseFI GTSAC 3 cut(s) 884, 1255, 1301
TseI GCWGC 9 cut(s) 210, 296, 547, 1071, 1332, 1471, 1761, 1802, 2332
Tsp45I GTSAC 3 cut(s) 884, 1255, 1301
TspGWI ACGGA 3 cut(s) 620, 1864, 2210
TspRI CASTG 5 cut(s) 31, 228, 961, 1717, 1800
Van91I CCANNNNNTGG 1 cut(s) 422
Vha464I CTTAAG 1 cut(s) 746
VneI GTGCAC 1 cut(s) 1791
VpaK11BI GGWCC 5 cut(s) 637, 718, 790, 1587, 1907
XagI CCTNNNNNAGG 2 cut(s) 2085, 2211
XapI RAATTY 4 cut(s) 812, 913, 1146, 2265
XceI RCATGY 5 cut(s) 19, 1081, 1256, 1956, 2246
XcmI CCANNNNNNNNNTGG 2 cut(s) 800, 815
XmiI GTMKAC 3 cut(s) 145, 1642, 1880
XmnI GAANNNNTTC 2 cut(s) 2106, 2244
XspI CTAG 7 cut(s) 372, 1799, 1869, 1976, 2015, 2370, 2416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.