Rroxscaffold_1G00040580

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000074
Physical Location & Seq
Forward (+)
58312725 .. 58318560
5836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040580.1

Sequence Viewer

Length: 2265 bp
ATGGACCCAAACGCTGAAGAAGGATCCAGTACTGACAATTCGGATGAGGAGATTGAATACACAAATTTGATGGAAGAGGCAGAAATGCAAGATTGTACACGATACAGAGGGAAGCTGTATAAGGATTTGAAATTAGAGGATTTGAAGGAAGTTGAGTTTAATAGCATCGAGGAAGTGGACAAGTTCTACTCTTACTATTCTCTAGCAAAGGGGTTCAGTGTAAGGAAGCAGAAGCTCGACAAGAACCGTGCGGGACTAGTCATTAGAAGACAGTTGGTTTGCTCGAAGCAAGGGAAGCGAAGAGCCCCAAAAGATACTATTAGTCATCAGAAGGGGAAGCAGGAAAATTGTCAGCTAAGTTCAATTGGGAATTGTCAACAGAACTCGACAAATATCAGTGGGCAGAACCCTCACAAAAAGCAGTGCACTGAAACCCGACGAGCAACAAGAGTTAATTGTCCAGCAAGTTTTGTTGTTAGGTTTTGTACCAAAAGGAGGGTGTACTATGCCTCAGAATTCATAACTGAACACAACCATGCTTTGGGTAGACCTGAGCATCGTCAGTTTCGAAGATCACACCTCAGGGACCACAACCTTGCTCAGCTTAATGCATCAAGGAAAGTTTTAGTGAGAACATGCCATGCTTACGAGTTCTTGGTACACCAAGCTGGAGGCTACGAGTTTGTTGGATTATACAACAAACCACAGGGTGAAAGGAAAGAAGTAGTGATGGATGGGGATGCACAGTCTTTGGTAACTTGGATGAATTTCAAGGCAATGCGGGACCCCCATTTTTATTGCATATTCAGTGTTGATAAGGAGGGGAGGCTTGCAAATGTGTTTTGGCGAGATGGGCAGTCGTTAACCGATTACAATGCTTTTGGTGAGGTTCTGATTTTCGACAGCAGTGAAAAATGCAACATATATGGCAAGCCCTTGGCTGTATTCGTCGGGTGTAATAACCACAGAGCCACAGTCCTTTTTGGTTATGCATTGTTAGTAGATGAAACAAAGGAAACATATGATTGGGTGATTACATGCTTTCTGACCTCCATGCATGGGAAAAAACCAATTTCAGTGATCACAAATAGTGATGATGCGATATGCAATGTGGTAAAGAATTTGATACCAAGGGCTAGACACCGACTTTGTGCATGGCATGTCGGGAAAAATGTGTGTCAGCATTTGAAAGACGTGGATACACAGAGACACTTTTTCCATTTGATTTTTGCTGGACTTACTATTGAGGAATGGGAAATGGCTTGGCAGTACTTTGTGGCAATGAACCGGCTGGAAAACAATGAATGGGTGACTAGTATGTACAATAAACGTGAAAGGTGGGCGGAGGCCTTTTTTCGAGACCATTTTTTTGGAGGAATCTGCAGCACCCAACGATGTGACAGGATGCATAGAAATCTTGAAGAAGGTATTGACCGTTATATGAGGCTGTATGAGGTCTTGCCCCGGATGGAGAAAACAATTGAGCGGATAAGAAATCAGGTCCTACAGGATGATTACCAATCACAGAACTATGACCCTGTGTATGGGAGCCACATGCGTTGTTTGCAGGAGGAGATTGGGAAAAGGTTCACCCATGACATCTTTCTCTTAATCAAGGAGCAGATTAATTTTGAGTCCAAGTTTGTTATTGGGCCAAGAAGTGTTCATCCAAAAACTGGTGCGTCATTGATTTCGCTGATGCAATATGGAAGGCCTGAGCGGAGGTGGATTGTGTCGTACCAGCCTGATGAAAGCAATCCAACATTAGTGTGTTCTTGCAAACTGTTCGAGTCTGATGGAATTCCCTGTTGTCACATTTTTGCTGTCATGAAATTTGAGATGCTCACAACATTCCCAGAATCGTTGGTGAATAAACGGTGGACAAAAGAAGCCACTGTTAAGACAGCAATATCGAGTTCCGGTTTGGTTAGTAACATGTCTGTGCAGATTGCACGGTATGGTGAATTGATGGCACAATGTGCTAAAATCTGCCATATTGCTTCCTATCGTGAGGAGGGGTACAATGAGATCAGAGAAGCTCTGAGCCAGCTGACCATACGATCCCAAAAGTACAGCGGTGAGAGTGAGTTTGAAAATGGTGTCCGTAGCCAAAGCCAGCCCATGAATTTGACTCATCACCTCGAAGAAGCCCGGGCATTTGAGTTTTTTGCTGGGTATGAGAAAAGTAAAAATGCCGCTTTGGACTCCCAAATTACTGGACTTCCAGATTTCTTTCAAAAGTTCAGGCCCTTTCCCAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

754

Amino Acids

87.73

Weight (kDa)

8.36

Isoelectric Point (pI)

46.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 61 - 118 6.6e-08 FAR1 DNA-binding domain
MULE PF10551 297 - 391 8.1e-19 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 541, 1676
AccBSI CCGCTC 2 cut(s) 1486, 1720
AccI GTMKAC 1 cut(s) 547
AciI CCGC 7 cut(s) 251, 781, 1343, 1486, 1720, 2076, 2196
AclWI GGATC 3 cut(s) 18, 31, 2055
AcsI RAATTY 7 cut(s) 64, 515, 766, 1120, 1800, 1832, 2125
AcuI CTGAAG 1 cut(s) 36
AdeI CACNNNGTG 2 cut(s) 710, 1979
AfiI CCNNNNNNNGG 5 cut(s) 495, 541, 1059, 1544, 1676
AflIII ACRYGT 1 cut(s) 1935
AgsI TTSAA 9 cut(s) 56, 130, 145, 363, 772, 1189, 1421, 2093, 2237
AhlI ACTAGT 2 cut(s) 256, 1313
AjiI CACGTC 1 cut(s) 1195
AluBI AGCT 7 cut(s) 115, 235, 355, 604, 668, 2039, 2050
AluI AGCT 7 cut(s) 115, 235, 355, 604, 668, 2039, 2050
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 2 cut(s) 1201, 1353
Alw44I GTGCAC 1 cut(s) 424
AlwI GGATC 3 cut(s) 18, 31, 2055
Ama87I CYCGRG 1 cut(s) 2151
AoxI GGCC 4 cut(s) 1347, 1652, 1712, 2246
ApaLI GTGCAC 1 cut(s) 424
ApeKI GCWGC 1 cut(s) 1383
ApoI RAATTY 7 cut(s) 64, 515, 766, 1120, 1800, 1832, 2125
ArsI GACNNNNNNTTYG 6 cut(s) 261, 293, 1131, 1163, 1352, 1384
AseI ATTAAT 1 cut(s) 1626
Asp700I GAANNNNTTC 1 cut(s) 1586
AspS9I GGNCC 6 cut(s) 4, 586, 784, 1501, 1652, 2247
AsuC2I CCSGG 3 cut(s) 1465, 2152, 2153
AsuHPI GGTGA 9 cut(s) 722, 896, 1042, 1321, 1582, 1879, 1973, 2090, 2129
AsuII TTCGAA 1 cut(s) 568
AvaI CYCGRG 1 cut(s) 2151
AvaII GGWCC 4 cut(s) 4, 586, 784, 1501
AxyI CCTNAGG 1 cut(s) 581
BaeGI GKGCMC 1 cut(s) 428
BamHI GGATCC 1 cut(s) 23
BanII GRGCYC 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 428
BbvI GCAGC 1 cut(s) 1395
BccI CCATC 7 cut(s) 64, 724, 728, 845, 1462, 1790, 1963
BcgI CGANNNNNNTGC 4 cut(s) 857, 891, 1768, 1802
BciVI GTATCC 1 cut(s) 1192
BclI TGATCA 1 cut(s) 1080
BcnI CCSGG 3 cut(s) 1465, 2152, 2153
BcoDI GTCTC 2 cut(s) 1201, 1353
BcuI ACTAGT 2 cut(s) 256, 1313
BfaI CTAG 4 cut(s) 203, 257, 1137, 1314
BfmI CTRYAG 2 cut(s) 1381, 1505
BfuI GTATCC 1 cut(s) 1192
BisI GCNGC 2 cut(s) 1384, 2196
BlpI GCTNAGC 1 cut(s) 600
BlsI GCNGC 2 cut(s) 1385, 2197
BmcAI AGTACT 2 cut(s) 31, 1271
Bme1390I CCNGG 3 cut(s) 1465, 2152, 2153
Bme18I GGWCC 4 cut(s) 4, 586, 784, 1501
BmeT110I CYCGRG 1 cut(s) 2151
BmgBI CACGTC 1 cut(s) 1195
BmgT120I GGNCC 6 cut(s) 4, 586, 784, 1501, 1652, 2247
BmiI GGNNCC 6 cut(s) 6, 25, 587, 785, 786, 1550
BmrFI CCNGG 3 cut(s) 1465, 2152, 2153
BmsI GCATC 8 cut(s) 174, 565, 620, 730, 1087, 1395, 1689, 1830
BpiI GAAGAC 1 cut(s) 274
BpmI CTGGAG 1 cut(s) 690
Bpu10I CCTNAGC 2 cut(s) 552, 1716
Bpu1102I GCTNAGC 1 cut(s) 600
Bpu14I TTCGAA 1 cut(s) 568
BpuMI CCSGG 3 cut(s) 1465, 2152, 2153
BsaI GGTCTC 1 cut(s) 1353
BsaJI CCNNGG 4 cut(s) 936, 1130, 1463, 2151
BsaWI WCCGGW 1 cut(s) 1919
Bsc4I CCNNNNNNNGG 5 cut(s) 495, 541, 1059, 1544, 1676
Bse118I RCCGGY 1 cut(s) 1287
Bse1I ACTGG 3 cut(s) 27, 1681, 2221
Bse21I CCTNAGG 1 cut(s) 581
Bse3DI GCAATG 3 cut(s) 783, 1114, 1287
BseDI CCNNGG 4 cut(s) 936, 1130, 1463, 2151
BseGI GGATG 8 cut(s) 49, 739, 745, 768, 1410, 1473, 1516, 1666
BseLI CCNNNNNNNGG 5 cut(s) 495, 541, 1059, 1544, 1676
BseMI GCAATG 3 cut(s) 783, 1114, 1287
BseMII CTCAG 6 cut(s) 525, 543, 595, 614, 1707, 2033
BseNI ACTGG 3 cut(s) 27, 1681, 2221
BseRI GAGGAG 3 cut(s) 62, 1586, 2027
BseSI GKGCMC 1 cut(s) 428
BseXI GCAGC 1 cut(s) 1395
BseYI CCCAGC 1 cut(s) 2171
BsgI GTGCAG 1 cut(s) 1964
BshFI GGCC 4 cut(s) 1349, 1654, 1714, 2248
BsiHKAI GWGCWC 1 cut(s) 428
BsiHKCI CYCGRG 1 cut(s) 2151
BsiSI CCGG 4 cut(s) 1288, 1465, 1920, 2152
BslFI GGGAC 3 cut(s) 267, 599, 797
BslI CCNNNNNNNGG 5 cut(s) 495, 541, 1059, 1544, 1676
BsmAI GTCTC 2 cut(s) 1201, 1353
BsmFI GGGAC 3 cut(s) 267, 599, 797
BsnI GGCC 4 cut(s) 1349, 1654, 1714, 2248
Bso31I GGTCTC 1 cut(s) 1353
BsoBI CYCGRG 1 cut(s) 2151
Bsp119I TTCGAA 1 cut(s) 568
Bsp1286I GDGCHC 2 cut(s) 307, 428
Bsp1407I TGTACA 2 cut(s) 95, 1320
Bsp143I GATC 5 cut(s) 23, 572, 1080, 2028, 2060
Bsp1720I GCTNAGC 1 cut(s) 600
BspACI CCGC 7 cut(s) 251, 781, 1343, 1486, 1720, 2076, 2196
BspANI GGCC 4 cut(s) 1349, 1654, 1714, 2248
BspCNI CTCAG 6 cut(s) 524, 544, 594, 613, 1708, 2034
BspHI TCATGA 1 cut(s) 1827
BspLI GGNNCC 6 cut(s) 6, 25, 587, 785, 786, 1550
BspMAI CTGCAG 1 cut(s) 1385
BspPI GGATC 3 cut(s) 18, 31, 2055
BspQI GCTCTTC 1 cut(s) 295
BspT104I TTCGAA 1 cut(s) 568
BspTNI GGTCTC 1 cut(s) 1353
BsrBI CCGCTC 2 cut(s) 1486, 1720
BsrDI GCAATG 3 cut(s) 783, 1114, 1287
BsrFI RCCGGY 1 cut(s) 1287
BsrGI TGTACA 2 cut(s) 95, 1320
BsrI ACTGG 3 cut(s) 27, 1681, 2221
BssAI RCCGGY 1 cut(s) 1287
BssECI CCNNGG 4 cut(s) 936, 1130, 1463, 2151
BssMI GATC 5 cut(s) 23, 572, 1080, 2028, 2060
BssT1I CCWWGG 2 cut(s) 936, 1130
Bst4CI ACNGT 9 cut(s) 248, 273, 747, 976, 1436, 1785, 1878, 1897, 1956
Bst6I CTCTTC 2 cut(s) 69, 295
BstAPI GCANNNNNTGC 1 cut(s) 1979
BstAUI TGTACA 2 cut(s) 95, 1320
BstBI TTCGAA 1 cut(s) 568
BstC8I GCNNGC 4 cut(s) 831, 932, 2048, 2117
BstDEI CTNAG 7 cut(s) 356, 511, 552, 581, 600, 1716, 2042
BstF5I GGATG 8 cut(s) 49, 739, 745, 768, 1410, 1473, 1516, 1666
BstKTI GATC 5 cut(s) 26, 575, 1083, 2031, 2063
BstMAI GTCTC 2 cut(s) 1201, 1353
BstMBI GATC 5 cut(s) 23, 572, 1080, 2028, 2060
BstMWI GCNNNNNNNGC 4 cut(s) 295, 853, 1564, 1979
BstNSI RCATGY 5 cut(s) 639, 1041, 1163, 1558, 1939
BstSCI CCNGG 3 cut(s) 1463, 2150, 2151
BstSFI CTRYAG 2 cut(s) 1381, 1505
BstSLI GKGCMC 1 cut(s) 428
BstV1I GCAGC 1 cut(s) 1395
BstV2I GAAGAC 1 cut(s) 274
BstX2I RGATCY 1 cut(s) 23
BstXI CCANNNNNNTGG 2 cut(s) 1370, 2216
BstYI RGATCY 1 cut(s) 23
Bsu36I CCTNAGG 1 cut(s) 581
BsuI GTATCC 1 cut(s) 1192
BsuRI GGCC 4 cut(s) 1349, 1654, 1714, 2248
BtrI CACGTC 1 cut(s) 1195
BtsCI GGATG 8 cut(s) 49, 739, 745, 768, 1410, 1473, 1516, 1666
BtsI GCAGTG 2 cut(s) 428, 913
BtsIMutI CAGTG 8 cut(s) 223, 403, 426, 428, 814, 913, 1083, 1893
Cac8I GCNNGC 4 cut(s) 831, 932, 2048, 2117
CciI TCATGA 1 cut(s) 1827
Cfr10I RCCGGY 1 cut(s) 1287
Cfr13I GGNCC 6 cut(s) 4, 586, 784, 1501, 1652, 2247
Cfr9I CCCGGG 1 cut(s) 2151
CseI GACGC 1 cut(s) 1671
CspCI CAANNNNNGTGG 2 cut(s) 1541, 1576
DdeI CTNAG 7 cut(s) 356, 511, 552, 581, 600, 1716, 2042
DpnI GATC 5 cut(s) 25, 574, 1082, 2030, 2062
DpnII GATC 5 cut(s) 23, 572, 1080, 2028, 2060
DraIII CACNNNGTG 2 cut(s) 710, 1979
Eam1104I CTCTTC 2 cut(s) 69, 295
EarI CTCTTC 2 cut(s) 69, 295
EciI GGCGGA 1 cut(s) 1358
Eco130I CCWWGG 2 cut(s) 936, 1130
Eco147I AGGCCT 2 cut(s) 1349, 1714
Eco24I GRGCYC 1 cut(s) 307
Eco31I GGTCTC 1 cut(s) 1353
Eco47I GGWCC 4 cut(s) 4, 586, 784, 1501
Eco57I CTGAAG 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 2151
EcoO109I RGGNCCY 3 cut(s) 784, 1501, 2247
EcoRI GAATTC 2 cut(s) 515, 1800
EcoT14I CCWWGG 2 cut(s) 936, 1130
EcoT22I ATGCAT 4 cut(s) 613, 994, 1059, 1410
EcoT38I GRGCYC 1 cut(s) 307
ErhI CCWWGG 2 cut(s) 936, 1130
FaqI GGGAC 3 cut(s) 267, 599, 797
FauI CCCGC 2 cut(s) 244, 774
FauNDI CATATG 1 cut(s) 1021
FbaI TGATCA 1 cut(s) 1080
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 2 cut(s) 1384, 2196
FokI GGATG 8 cut(s) 56, 746, 752, 775, 1417, 1480, 1523, 1653
FriOI GRGCYC 1 cut(s) 307
Fsp4HI GCNGC 2 cut(s) 1384, 2196
FspBI CTAG 4 cut(s) 203, 257, 1137, 1314
GluI GCNGC 2 cut(s) 1384, 2196
GsaI CCCAGC 1 cut(s) 2175
GsuI CTGGAG 1 cut(s) 690
HaeIII GGCC 4 cut(s) 1349, 1654, 1714, 2248
HapII CCGG 4 cut(s) 1288, 1465, 1920, 2152
HgaI GACGC 1 cut(s) 1671
HincII GTYRAC 2 cut(s) 377, 864
HindII GTYRAC 2 cut(s) 377, 864
HinfI GANTC 6 cut(s) 1377, 1634, 1790, 1859, 2131, 2204
HpaI GTTAAC 1 cut(s) 864
HpaII CCGG 4 cut(s) 1288, 1465, 1920, 2152
HphI GGTGA 9 cut(s) 722, 896, 1042, 1321, 1582, 1879, 1973, 2090, 2129
Hpy188I TCNGA 8 cut(s) 43, 330, 514, 894, 1047, 1795, 2033, 2043
Hpy188III TCNNGA 6 cut(s) 1165, 1358, 1418, 1828, 2009, 2225
Hpy99I CGWCG 2 cut(s) 441, 953
HpyAV CCTTC 5 cut(s) 14, 139, 325, 1418, 1704
HpyCH4III ACNGT 9 cut(s) 248, 273, 747, 976, 1436, 1785, 1878, 1897, 1956
HpyCH4IV ACGT 2 cut(s) 1194, 1330
HpyF10VI GCNNNNNNNGC 4 cut(s) 295, 853, 1564, 1979
HpyF3I CTNAG 7 cut(s) 356, 511, 552, 581, 600, 1716, 2042
HpySE526I ACGT 2 cut(s) 1194, 1330
KflI GGGWCCC 1 cut(s) 784
Ksp22I TGATCA 1 cut(s) 1080
KspAI GTTAAC 1 cut(s) 864
Kzo9I GATC 5 cut(s) 23, 572, 1080, 2028, 2060
LguI GCTCTTC 1 cut(s) 295
LmnI GCTCC 2 cut(s) 1548, 1618
Lsp1109I GCAGC 1 cut(s) 1395
LweI GCATC 8 cut(s) 174, 565, 620, 730, 1087, 1395, 1689, 1830
MaeI CTAG 4 cut(s) 203, 257, 1137, 1314
MaeII ACGT 2 cut(s) 1194, 1330
MaeIII GTNAC 5 cut(s) 754, 1309, 1397, 1811, 1931
MalI GATC 5 cut(s) 25, 574, 1082, 2030, 2062
MbiI CCGCTC 2 cut(s) 1486, 1720
MboI GATC 5 cut(s) 23, 572, 1080, 2028, 2060
MboII GAAGA 7 cut(s) 29, 86, 279, 312, 582, 1433, 2156
MfeI CAATTG 2 cut(s) 363, 1479
MflI RGATCY 1 cut(s) 23
MhlI GDGCHC 2 cut(s) 307, 428
MlyI GAGTC 4 cut(s) 1643, 1799, 2125, 2198
MmeI TCCRAC 2 cut(s) 667, 1784
Mph1103I ATGCAT 4 cut(s) 613, 994, 1059, 1410
MroXI GAANNNNTTC 1 cut(s) 1586
MseI TTAA 7 cut(s) 159, 453, 606, 863, 1610, 1626, 1899
MslI CAYNNNNRTG 3 cut(s) 534, 1768, 1940
MspA1I CMGCKG 2 cut(s) 2050, 2076
MspI CCGG 4 cut(s) 1288, 1465, 1920, 2152
MspR9I CCNGG 3 cut(s) 1465, 2152, 2153
MunI CAATTG 2 cut(s) 363, 1479
MwoI GCNNNNNNNGC 4 cut(s) 295, 853, 1564, 1979
NciI CCSGG 3 cut(s) 1465, 2152, 2153
NdeI CATATG 1 cut(s) 1021
NdeII GATC 5 cut(s) 23, 572, 1080, 2028, 2060
NlaIV GGNNCC 6 cut(s) 6, 25, 587, 785, 786, 1550
NmuCI GTSAC 3 cut(s) 1309, 1397, 1811
NsiI ATGCAT 4 cut(s) 613, 994, 1059, 1410
NspI RCATGY 5 cut(s) 639, 1041, 1163, 1558, 1939
NspV TTCGAA 1 cut(s) 568
PagI TCATGA 1 cut(s) 1827
PceI AGGCCT 2 cut(s) 1349, 1714
PciI ACATGT 1 cut(s) 1935
PciSI GCTCTTC 1 cut(s) 295
PcsI WCGNNNNNNNCGW 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 1586
PfeI GAWTC 2 cut(s) 1377, 1859
PflMI CCANNNNNTGG 2 cut(s) 541, 1676
PkrI GCNGC 2 cut(s) 1385, 2197
PleI GAGTC 4 cut(s) 1642, 1798, 2125, 2198
PpsI GAGTC 4 cut(s) 1642, 1798, 2125, 2198
PpuMI RGGWCCY 2 cut(s) 784, 1501
PscI ACATGT 1 cut(s) 1935
PshBI ATTAAT 1 cut(s) 1626
Psp5II RGGWCCY 2 cut(s) 784, 1501
PspFI CCCAGC 1 cut(s) 2171
PspN4I GGNNCC 6 cut(s) 6, 25, 587, 785, 786, 1550
PspPI GGNCC 6 cut(s) 4, 586, 784, 1501, 1652, 2247
PspPPI RGGWCCY 2 cut(s) 784, 1501
PstI CTGCAG 1 cut(s) 1385
PsuI RGATCY 1 cut(s) 23
PvuII CAGCTG 1 cut(s) 2050
RseI CAYNNNNRTG 3 cut(s) 534, 1768, 1940
SapI GCTCTTC 1 cut(s) 295
SaqAI TTAA 7 cut(s) 159, 453, 606, 863, 1610, 1626, 1899
SatI GCNGC 2 cut(s) 1384, 2196
Sau3AI GATC 5 cut(s) 23, 572, 1080, 2028, 2060
Sau96I GGNCC 6 cut(s) 4, 586, 784, 1501, 1652, 2247
ScaI AGTACT 2 cut(s) 31, 1271
SchI GAGTC 4 cut(s) 1643, 1799, 2125, 2198
ScrFI CCNGG 3 cut(s) 1465, 2152, 2153
SduI GDGCHC 2 cut(s) 307, 428
SfaNI GCATC 8 cut(s) 174, 565, 620, 730, 1087, 1395, 1689, 1830
SfcI CTRYAG 2 cut(s) 1381, 1505
SfuI TTCGAA 1 cut(s) 568
SinI GGWCC 4 cut(s) 4, 586, 784, 1501
SmaI CCCGGG 1 cut(s) 2153
SmiMI CAYNNNNRTG 3 cut(s) 534, 1768, 1940
SpeI ACTAGT 2 cut(s) 256, 1313
SrfI GCCCGGGC 1 cut(s) 2153
SseBI AGGCCT 2 cut(s) 1349, 1714
SsiI CCGC 7 cut(s) 251, 781, 1343, 1486, 1720, 2076, 2196
SspMI CTAG 4 cut(s) 203, 257, 1137, 1314
StuI AGGCCT 2 cut(s) 1349, 1714
StyD4I CCNGG 3 cut(s) 1463, 2150, 2151
StyI CCWWGG 2 cut(s) 936, 1130
TaaI ACNGT 9 cut(s) 248, 273, 747, 976, 1436, 1785, 1878, 1897, 1956
TaiI ACGT 2 cut(s) 1197, 1333
TatI WGTACW 6 cut(s) 29, 95, 501, 1269, 1320, 2070
TauI GCSGC 1 cut(s) 2198
TfiI GAWTC 2 cut(s) 1377, 1859
Tru1I TTAA 7 cut(s) 159, 453, 606, 863, 1610, 1626, 1899
Tru9I TTAA 7 cut(s) 159, 453, 606, 863, 1610, 1626, 1899
TscAI CASTG 8 cut(s) 223, 403, 428, 433, 814, 913, 1083, 1900
TseFI GTSAC 3 cut(s) 1309, 1397, 1811
TseI GCWGC 1 cut(s) 1383
Tsp45I GTSAC 3 cut(s) 1309, 1397, 1811
TspDTI ATGAA 9 cut(s) 508, 779, 1020, 1298, 1317, 1655, 1764, 1844, 2138
TspGWI ACGGA 1 cut(s) 2093
TspMI CCCGGG 1 cut(s) 2151
TspRI CASTG 8 cut(s) 223, 403, 428, 433, 814, 913, 1083, 1900
Van91I CCANNNNNTGG 2 cut(s) 541, 1676
VneI GTGCAC 1 cut(s) 424
VpaK11BI GGWCC 4 cut(s) 4, 586, 784, 1501
VspI ATTAAT 1 cut(s) 1626
XapI RAATTY 7 cut(s) 64, 515, 766, 1120, 1800, 1832, 2125
XceI RCATGY 5 cut(s) 639, 1041, 1163, 1558, 1939
XmaI CCCGGG 1 cut(s) 2151
XmiI GTMKAC 1 cut(s) 547
XmnI GAANNNNTTC 1 cut(s) 1586
XspI CTAG 4 cut(s) 203, 257, 1137, 1314
ZrmI AGTACT 2 cut(s) 31, 1271
Zsp2I ATGCAT 4 cut(s) 613, 994, 1059, 1410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.