Rroxscaffold_1G00004080

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
5514152 .. 5518947
4796 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00004080.1

Sequence Viewer

Length: 861 bp
ATGAAGAGGAATCAATGCCCAAGGGGTAAAAGATATAGCCGAGTTGGATGCATGGCCGCATTTGGAATTCGATACTGCAAGGAAAGGAAGAAGTATTTCGTATCAAAGTTCATAACCAATCACAATCATGATGTTGCTGTTTCGGAAGAGGTTCAGTTCCTTCGTTCTCACCGAGGAGTGAATGACAGCGTCATTGCCCAGGTTGAGGCTCTACAGAAAGCACAAGTACACATAAGCCAGATATATGAACTCCTTGTTGAGCAAGCAGGTGGGCAACAATTTCTGCAGTTCACCCTCAAAGATTTGTACAATGAACTTGATAAGAGGAAGAAAGCAGCGGGCTTAGATGGGGATGCTCATTCTACCATCACTTGGATGCAAATCAGGGCATTGGAGGAAAAACAATTCTACTGCAAGCATACATTAGATAAAGAGGGAAGGTTGGCAAACTTGTTTTGGCGGGACCGGCAATCTCTGTTGGACTACAATGCATATGGTGATGTACTAATTATGGATAGTACTTACAAAACCAATATATATGGAAAGCCTCTGGTTGTTTTTGTCTGGTGCAATAGCCACCGAGCCACTGTTGTTTATGGGTTTTCCCTTTTAGGCGATGAGAAGGAGGACACTTATAGTTGGGTATTTCAAAAAATTTTAGCAGCAATGAACCAAAAGCACCCGATATCAATTTTAACAGATGGGGACGAGGCAATAAGGAATGTTGTGGAAAATTTAATGCCAACAGCCAGACATAGATTATGTGCGTGGCACATTGGGCGAAATATTGGTCAAAATGTGAAGGTTGAGGAAGTGCAGGAGAGCATTGGGAAGTTGATTTATGCTTCTTTAATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

286

Amino Acids

33.03

Weight (kDa)

8.99

Isoelectric Point (pI)

36.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 140 - 251 2.1e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 168 - 261 9.5e-25 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 257
Acc36I ACCTGC 1 cut(s) 257
AccB7I CCANNNNNTGG 1 cut(s) 372
AciI CCGC 3 cut(s) 57, 338, 460
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 3 cut(s) 66, 654, 733
AfaI GTAC 4 cut(s) 228, 308, 504, 520
AfiI CCNNNNNNNGG 2 cut(s) 205, 372
AgsI TTSAA 1 cut(s) 650
AjnI CCWGG 1 cut(s) 198
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 335, 662
ApoI RAATTY 3 cut(s) 66, 654, 733
ArsI GACNNNNNNTTYG 2 cut(s) 775, 807
Asp700I GAANNNNTTC 2 cut(s) 95, 150
AspS9I GGNCC 1 cut(s) 463
AsuHPI GGTGA 3 cut(s) 161, 283, 509
AvaII GGWCC 1 cut(s) 463
BbvI GCAGC 2 cut(s) 347, 674
BccI CCATC 3 cut(s) 341, 374, 695
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BciT130I CCWGG 1 cut(s) 200
BfmI CTRYAG 2 cut(s) 212, 284
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 3 cut(s) 57, 336, 663
BlsI GCNGC 3 cut(s) 58, 337, 664
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 1 cut(s) 200
Bme18I GGWCC 1 cut(s) 463
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 3 cut(s) 38, 343, 366
BsaBI GATNNNNATC 1 cut(s) 380
BsaJI CCNNGG 3 cut(s) 20, 172, 198
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 372
Bse118I RCCGGY 1 cut(s) 465
Bse3DI GCAATG 2 cut(s) 192, 672
Bse8I GATNNNNATC 1 cut(s) 380
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 20, 172, 198
BseGI GGATG 3 cut(s) 53, 358, 381
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 2 cut(s) 205, 372
BseMI GCAATG 2 cut(s) 192, 672
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 347, 674
BsgI GTGCAG 1 cut(s) 836
BshFI GGCC 1 cut(s) 56
BsiSI CCGG 1 cut(s) 466
BslFI GGGAC 2 cut(s) 476, 719
BslI CCNNNNNNNGG 2 cut(s) 205, 372
BsmFI GGGAC 2 cut(s) 476, 719
BsnI GGCC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 306
BspACI CCGC 3 cut(s) 57, 338, 460
BspANI GGCC 1 cut(s) 56
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 1 cut(s) 464
BspMAI CTGCAG 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 257
BsrDI GCAATG 2 cut(s) 192, 672
BsrFI RCCGGY 1 cut(s) 465
BsrGI TGTACA 1 cut(s) 306
BssAI RCCGGY 1 cut(s) 465
BssECI CCNNGG 3 cut(s) 20, 172, 198
BssT1I CCWWGG 1 cut(s) 20
Bst2UI CCWGG 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 589
Bst6I CTCTTC 1 cut(s) 141
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 3 cut(s) 264, 340, 416
BstDEI CTNAG 1 cut(s) 343
BstF5I GGATG 3 cut(s) 53, 358, 381
BstMWI GCNNNNNNNGC 2 cut(s) 466, 778
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstSFI CTRYAG 2 cut(s) 212, 284
BstV1I GCAGC 2 cut(s) 347, 674
BsuRI GGCC 1 cut(s) 56
BtgZI GCGATG 1 cut(s) 630
BtsCI GGATG 3 cut(s) 53, 358, 381
BtsIMutI CAGTG 1 cut(s) 585
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 3 cut(s) 264, 340, 416
CciI TCATGA 1 cut(s) 127
Cfr10I RCCGGY 1 cut(s) 465
Cfr13I GGNCC 1 cut(s) 463
CseI GACGC 1 cut(s) 178
Csp6I GTAC 4 cut(s) 227, 307, 503, 519
CviAII CATG 2 cut(s) 52, 128
CviJI RGCY 9 cut(s) 39, 56, 209, 237, 342, 547, 576, 584, 749
CviKI_1 RGCY 9 cut(s) 39, 56, 209, 237, 342, 547, 576, 584, 749
CviQI GTAC 4 cut(s) 227, 307, 503, 519
DdeI CTNAG 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
Eco130I CCWWGG 1 cut(s) 20
Eco32I GATATC 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 463
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 198
EcoRV GATATC 1 cut(s) 687
EcoT14I CCWWGG 1 cut(s) 20
EcoT22I ATGCAT 2 cut(s) 53, 493
ErhI CCWWGG 1 cut(s) 20
FaeI CATG 2 cut(s) 55, 131
FaqI GGGAC 2 cut(s) 476, 719
FatI CATG 2 cut(s) 51, 127
FauI CCCGC 2 cut(s) 331, 453
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 3 cut(s) 57, 336, 663
FokI GGATG 3 cut(s) 60, 365, 388
Fsp4HI GCNGC 3 cut(s) 57, 336, 663
GluI GCNGC 3 cut(s) 57, 336, 663
HaeIII GGCC 1 cut(s) 56
HapII CCGG 1 cut(s) 466
HgaI GACGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 55, 131
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 466
HphI GGTGA 3 cut(s) 161, 283, 509
Hpy166II GTNNAC 2 cut(s) 229, 291
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 2 cut(s) 229, 291
HpyAV CCTTC 4 cut(s) 170, 432, 616, 796
HpyCH4III ACNGT 1 cut(s) 589
HpyCH4V TGCA 8 cut(s) 51, 78, 286, 379, 414, 491, 570, 817
HpyF10VI GCNNNNNNNGC 2 cut(s) 466, 778
HpyF3I CTNAG 1 cut(s) 343
Hsp92II CATG 2 cut(s) 55, 131
Lsp1109I GCAGC 2 cut(s) 347, 674
LweI GCATC 3 cut(s) 38, 343, 366
MboII GAAGA 4 cut(s) 16, 100, 158, 340
MluCI AATT 7 cut(s) 66, 278, 404, 507, 654, 690, 733
MmeI TCCRAC 2 cut(s) 25, 459
Mph1103I ATGCAT 2 cut(s) 53, 493
MroXI GAANNNNTTC 2 cut(s) 95, 150
MseI TTAA 3 cut(s) 695, 737, 851
MslI CAYNNNNRTG 2 cut(s) 126, 374
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 466
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 466, 778
NdeI CATATG 1 cut(s) 493
NlaIII CATG 2 cut(s) 55, 131
NlaIV GGNNCC 1 cut(s) 464
NmeAIII GCCGAG 1 cut(s) 65
NsiI ATGCAT 2 cut(s) 53, 493
PagI TCATGA 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 257
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 95, 150
PfeI GAWTC 1 cut(s) 10
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 372
PkrI GCNGC 3 cut(s) 58, 337, 664
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 464
PspPI GGNCC 1 cut(s) 463
PstI CTGCAG 1 cut(s) 288
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 4 cut(s) 228, 308, 504, 520
RsaNI GTAC 4 cut(s) 227, 307, 503, 519
RseI CAYNNNNRTG 2 cut(s) 126, 374
SaqAI TTAA 3 cut(s) 695, 737, 851
SatI GCNGC 3 cut(s) 57, 336, 663
Sau96I GGNCC 1 cut(s) 463
ScaI AGTACT 1 cut(s) 520
ScrFI CCNGG 1 cut(s) 200
SetI ASST 5 cut(s) 153, 204, 271, 443, 807
SfaNI GCATC 3 cut(s) 38, 343, 366
SfcI CTRYAG 2 cut(s) 212, 284
SinI GGWCC 1 cut(s) 463
SmiMI CAYNNNNRTG 2 cut(s) 126, 374
Sse9I AATT 7 cut(s) 66, 278, 404, 507, 654, 690, 733
SsiI CCGC 3 cut(s) 57, 338, 460
SspI AATATT 1 cut(s) 787
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 20
TaaI ACNGT 1 cut(s) 589
TaqI TCGA 1 cut(s) 70
TasI AATT 7 cut(s) 66, 278, 404, 507, 654, 690, 733
TatI WGTACW 4 cut(s) 226, 306, 502, 518
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 3 cut(s) 695, 737, 851
Tru9I TTAA 3 cut(s) 695, 737, 851
TscAI CASTG 1 cut(s) 592
TseI GCWGC 2 cut(s) 335, 662
TspDTI ATGAA 5 cut(s) 17, 100, 261, 327, 683
TspRI CASTG 1 cut(s) 592
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 372
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 3 cut(s) 66, 654, 733
XmnI GAANNNNTTC 2 cut(s) 95, 150
ZrmI AGTACT 1 cut(s) 520
Zsp2I ATGCAT 2 cut(s) 53, 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.