RLG00000018444

protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
29849182 .. 29849931
750 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018444

Sequence Viewer

Length: 618 bp
ATGGCAGGATTGCTATCATGGGCCGCAGACTTAGTCGGAGCCGGCAGCGGTCAAGGCGACGATGACAAGAATCCCAATCCAATTCCACTGATATTCAGATTGGAGCAGCGTTTAACTTGTCCCATGGACCTTCAAGTTGAAGGAAGACCGGTAGATGCACCTAATTGTACACTCTCTGATGCGGGTTCGAACCACCACAATTCCAATGATCAACCCAAAGTTGGTGGAAAATGCACAAAATGTCAACAACGGGGACACAACAAGCGAACTTGTGGGAGGGAAAACAAATTGGGTGCTTCTGATGCCAAGAGTCCCACACCAACTAAGGTTGTATCTGATACATTTAGTGAAGGTTTAGAGGATGATGTTTATAATGATGGCACAAGTGACGTCAATGAAGATGAATTCAAAGACGGCGAATTCACTAAAAGACAGTCCTCGAATTTGATGCGTCACTTGGAAGAAGTTCGCCCATTCGAGTTTTTTGCTGGGTATGATATAAGTGAAAATGAAGATTCTAACCCAAACTGTACCAGAGTTCCCAATTTCTTTCAACATTTCAGGCCCTTCCCCAACGATGAGGGCTACGACGGTGCGTCACATAGTGATGACAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

206

Amino Acids

22.64

Weight (kDa)

4.69

Isoelectric Point (pI)

41.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
AatII GACGTC 1 cut(s) 393
AciI CCGC 3 cut(s) 24, 48, 182
AcsI RAATTY 3 cut(s) 404, 419, 442
AcyI GRCGYC 1 cut(s) 390
AdeI CACNNNGTG 1 cut(s) 605
AfaI GTAC 2 cut(s) 169, 532
AfiI CCNNNNNNNGG 1 cut(s) 221
AgeI ACCGGT 1 cut(s) 148
AgsI TTSAA 4 cut(s) 134, 140, 409, 554
AhdI GACNNNNNGTC 1 cut(s) 595
AoxI GGCC 2 cut(s) 21, 563
ApeKI GCWGC 2 cut(s) 45, 106
ApoI RAATTY 3 cut(s) 404, 419, 442
AsiGI ACCGGT 1 cut(s) 148
Asp700I GAANNNNTTC 1 cut(s) 465
AspS9I GGNCC 3 cut(s) 21, 127, 564
AsuII TTCGAA 1 cut(s) 188
AvaII GGWCC 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 151
BbvI GCAGC 2 cut(s) 57, 118
BccI CCATC 1 cut(s) 371
BceAI ACGGC 1 cut(s) 430
BcgI CGANNNNNNTGC 4 cut(s) 430, 464, 467, 501
BclI TGATCA 1 cut(s) 208
BisI GCNGC 3 cut(s) 24, 46, 107
BlsI GCNGC 3 cut(s) 25, 47, 108
Bme18I GGWCC 1 cut(s) 127
BmeRI GACNNNNNGTC 1 cut(s) 595
BmgT120I GGNCC 3 cut(s) 21, 127, 564
BmiI GGNNCC 1 cut(s) 40
BmsI GCATC 4 cut(s) 145, 169, 292, 438
BpiI GAAGAC 1 cut(s) 151
Bpu14I TTCGAA 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 13
BsaHI GRCGYC 1 cut(s) 390
BsaJI CCNNGG 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse118I RCCGGY 2 cut(s) 41, 148
Bse8I GATNNNNATC 1 cut(s) 13
BseDI CCNNGG 1 cut(s) 123
BseGI GGATG 1 cut(s) 367
BseJI GATNNNNATC 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 221
BseXI GCAGC 2 cut(s) 57, 118
BseYI CCCAGC 1 cut(s) 488
BshFI GGCC 2 cut(s) 23, 565
BshTI ACCGGT 1 cut(s) 148
BsiSI CCGG 2 cut(s) 42, 149
BslFI GGGAC 3 cut(s) 105, 267, 297
BslI CCNNNNNNNGG 1 cut(s) 221
BsmFI GGGAC 3 cut(s) 105, 267, 297
BsnI GGCC 2 cut(s) 23, 565
Bsp119I TTCGAA 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 167
Bsp143I GATC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 123
BspACI CCGC 3 cut(s) 24, 48, 182
BspANI GGCC 2 cut(s) 23, 565
BspLI GGNNCC 1 cut(s) 40
BspT104I TTCGAA 1 cut(s) 188
BsrFI RCCGGY 2 cut(s) 41, 148
BsrGI TGTACA 1 cut(s) 167
BssAI RCCGGY 2 cut(s) 41, 148
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 3 cut(s) 435, 530, 593
BstACI GRCGYC 1 cut(s) 390
BstAUI TGTACA 1 cut(s) 167
BstBI TTCGAA 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 2 cut(s) 31, 324
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 367
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 54, 302
BstV1I GCAGC 2 cut(s) 57, 118
BstV2I GAAGAC 1 cut(s) 151
BsuRI GGCC 2 cut(s) 23, 565
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 43
Cfr10I RCCGGY 2 cut(s) 41, 148
Cfr13I GGNCC 3 cut(s) 21, 127, 564
CseI GACGC 2 cut(s) 440, 585
Csp6I GTAC 2 cut(s) 168, 531
CspAI ACCGGT 1 cut(s) 148
CspCI CAANNNNNGTGG 2 cut(s) 205, 240
CviAII CATG 2 cut(s) 18, 124
CviJI RGCY 4 cut(s) 23, 41, 565, 585
CviKI_1 RGCY 4 cut(s) 23, 41, 565, 585
CviQI GTAC 2 cut(s) 168, 531
DdeI CTNAG 2 cut(s) 31, 324
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DraIII CACNNNGTG 1 cut(s) 605
DriI GACNNNNNGTC 1 cut(s) 595
Eam1105I GACNNNNNGTC 1 cut(s) 595
Eco130I CCWWGG 1 cut(s) 123
Eco47I GGWCC 1 cut(s) 127
EcoO109I RGGNCCY 1 cut(s) 564
EcoRI GAATTC 2 cut(s) 404, 419
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 2 cut(s) 21, 127
FaiI YATR 6 cut(s) 19, 125, 372, 495, 500, 603
FaqI GGGAC 3 cut(s) 105, 267, 297
FatI CATG 2 cut(s) 17, 123
FauI CCCGC 1 cut(s) 175
FbaI TGATCA 1 cut(s) 208
Fnu4HI GCNGC 3 cut(s) 24, 46, 107
FokI GGATG 1 cut(s) 374
Fsp4HI GCNGC 3 cut(s) 24, 46, 107
GluI GCNGC 3 cut(s) 24, 46, 107
GsaI CCCAGC 1 cut(s) 492
HaeIII GGCC 2 cut(s) 23, 565
HapII CCGG 2 cut(s) 42, 149
HgaI GACGC 2 cut(s) 440, 585
Hin1I GRCGYC 1 cut(s) 390
Hin1II CATG 2 cut(s) 21, 127
HincII GTYRAC 1 cut(s) 245
HindII GTYRAC 1 cut(s) 245
HinfI GANTC 3 cut(s) 70, 310, 515
HpaII CCGG 2 cut(s) 42, 149
Hpy166II GTNNAC 2 cut(s) 170, 245
Hpy188I TCNGA 5 cut(s) 38, 98, 178, 301, 337
Hpy8I GTNNAC 2 cut(s) 170, 245
Hpy99I CGWCG 2 cut(s) 62, 593
HpyAV CCTTC 4 cut(s) 134, 140, 344, 577
HpyCH4III ACNGT 3 cut(s) 435, 530, 593
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 2 cut(s) 158, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 302
HpyF3I CTNAG 2 cut(s) 31, 324
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 1 cut(s) 390
Hsp92II CATG 2 cut(s) 21, 127
KroI GCCGGC 1 cut(s) 41
KroNI GCCGGC 1 cut(s) 43
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 38, 103
LpnPI CCDG 5 cut(s) 55, 162, 474, 547, 547
Lsp1109I GCAGC 2 cut(s) 57, 118
LweI GCATC 4 cut(s) 145, 169, 292, 438
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 3 cut(s) 386, 452, 597
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 4 cut(s) 156, 410, 473, 524
MluCI AATT 9 cut(s) 81, 163, 199, 287, 404, 419, 442, 544, 613
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 16
MnlI CCTC 4 cut(s) 270, 352, 448, 574
MroNI GCCGGC 1 cut(s) 41
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 2 cut(s) 113, 616
MslI CAYNNNNRTG 1 cut(s) 606
MspA1I CMGCKG 1 cut(s) 48
MspI CCGG 2 cut(s) 42, 149
MwoI GCNNNNNNNGC 2 cut(s) 54, 302
NaeI GCCGGC 1 cut(s) 43
NcoI CCATGG 1 cut(s) 123
NdeII GATC 1 cut(s) 208
NgoMIV GCCGGC 1 cut(s) 41
NlaIII CATG 2 cut(s) 21, 127
NlaIV GGNNCC 1 cut(s) 40
NmuCI GTSAC 3 cut(s) 386, 452, 597
NspV TTCGAA 1 cut(s) 188
PdiI GCCGGC 1 cut(s) 43
PdmI GAANNNNTTC 1 cut(s) 465
PfeI GAWTC 2 cut(s) 70, 515
PflFI GACNNNGTC 1 cut(s) 32
PinAI ACCGGT 1 cut(s) 148
PkrI GCNGC 3 cut(s) 25, 47, 108
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PsiI TTATAA 1 cut(s) 372
PspFI CCCAGC 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 40
PspPI GGNCC 3 cut(s) 21, 127, 564
PsyI GACNNNGTC 1 cut(s) 32
RsaI GTAC 2 cut(s) 169, 532
RsaNI GTAC 2 cut(s) 168, 531
RseI CAYNNNNRTG 1 cut(s) 606
SaqAI TTAA 2 cut(s) 113, 616
SatI GCNGC 3 cut(s) 24, 46, 107
Sau3AI GATC 1 cut(s) 208
Sau96I GGNCC 3 cut(s) 21, 127, 564
SchI GAGTC 1 cut(s) 319
SetI ASST 5 cut(s) 132, 163, 330, 355, 393
SfaNI GCATC 4 cut(s) 145, 169, 292, 438
SfuI TTCGAA 1 cut(s) 188
SinI GGWCC 1 cut(s) 127
SmiMI CAYNNNNRTG 1 cut(s) 606
Sse9I AATT 9 cut(s) 81, 163, 199, 287, 404, 419, 442, 544, 613
SsiI CCGC 3 cut(s) 24, 48, 182
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 3 cut(s) 435, 530, 593
TaiI ACGT 1 cut(s) 393
TaqI TCGA 3 cut(s) 188, 440, 477
TasI AATT 9 cut(s) 81, 163, 199, 287, 404, 419, 442, 544, 613
TatI WGTACW 1 cut(s) 167
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 2 cut(s) 70, 515
Tru1I TTAA 2 cut(s) 113, 616
Tru9I TTAA 2 cut(s) 113, 616
TscAI CASTG 1 cut(s) 93
TseFI GTSAC 3 cut(s) 386, 452, 597
TseI GCWGC 2 cut(s) 45, 106
Tsp45I GTSAC 3 cut(s) 386, 452, 597
TspDTI ATGAA 3 cut(s) 411, 417, 525
TspRI CASTG 1 cut(s) 93
Tth111I GACNNNGTC 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 3 cut(s) 404, 419, 442
XmnI GAANNNNTTC 1 cut(s) 465
ZraI GACGTC 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.