Rw5G047260

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000074
Physical Location & Seq
Reverse (-)
81766579 .. 81767562
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G047260.1

Sequence Viewer

Length: 984 bp
ATGTACGGCAAAAAACCAATTTCTGTAATCACTGATAGTGATGAAGCTGTGCGTAATGCAGTGACTAATCTCATACCGGAGGCAAGACACCGTCTTTGTGCATGGCATATTGTGAGAAACGTGTGTCAGCATTTGAAAAACCCAAAAACCCAGACAGATTTCTTTCATTTGATATTTGCTGGTCTTACTGTTGAGCAATGGGAATCTGCATGGCAGTATTTTGTGGCGATGAATCGGCTTGAGAACAACACATGGGTGGCTGGTATGTACAACAAACGTCATAGATGGGGGGAAGCCTTTTTTCGAGACCATTTTTTTGCGGGAATTTGCAGCACCCAACGATGTGAGGGGATGCACAAAAATCTGAAAGGAGGTATTGGCCGTTGTATGAGGTTGTACGAGGTGTTACCTAGGATGGAAAAAACAGTTCAGCGGATCAGACAACAGGTTCTATATGATGATTATCGCTCGGAGAACTGTGAACCAGTGTATGTAAGTCACATGCGTGGTTTGCAAGAGGACATTGGGAGAAGATTCACCCATGACATCTTTCTCTTAATCAAGGATCAGATTCGATATGAGTCCAAGTTCATTCTTGACCCAAATAGACTTGTTGATCCACACACTCATTCCGTGTTGATATCATTGAGTCAATATGGAAAGCCTGAGCGGAGATGGACTGTGTTGTACCAGCCTGATGAGAACAATCCTTCTTTTGTTTGTTCTTGCAAACTATTCGAGTCTGATGGAATTCCTTGTTGTCACATTTTTGCTGTCATAAAAAATGAGCAGATTACAACATTACCAGAATCCTTGGTGAACAAGAGGTGGACTAAAGAGGCCATGGTTAGGAAGACCTTGTCAACTTTTAAGGAGGTTCCTGACAAATATGTGCAGATTGCACGGTATGGTGAATTGATGTCCCAATGTGCTAAATTCTCTGCCATCGTGCATCCTATAGCGATGAGGGCTATGATGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

327

Amino Acids

38.46

Weight (kDa)

9.13

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 1 - 40 2.7e-08 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 670
AciI CCGC 3 cut(s) 320, 433, 670
AclWI GGATC 3 cut(s) 443, 573, 611
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 3 cut(s) 324, 750, 935
AfaI GTAC 4 cut(s) 5, 269, 398, 689
AfiI CCNNNNNNNGG 1 cut(s) 849
AflIII ACRYGT 1 cut(s) 120
AgsI TTSAA 1 cut(s) 136
AleI CACNNNNGTG 2 cut(s) 254, 504
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
Alw26I GTCTC 1 cut(s) 300
AlwI GGATC 3 cut(s) 443, 573, 611
AoxI GGCC 2 cut(s) 379, 840
ApeKI GCWGC 1 cut(s) 330
ApoI RAATTY 3 cut(s) 324, 750, 935
ArsI GACNNNNNNTTYG 4 cut(s) 78, 110, 299, 331
AspA2I CCTAGG 1 cut(s) 410
AsuHPI GGTGA 3 cut(s) 529, 829, 923
AvrII CCTAGG 1 cut(s) 410
BbsI GAAGAC 1 cut(s) 860
BbvI GCAGC 1 cut(s) 342
BccI CCATC 5 cut(s) 279, 409, 669, 740, 953
BceAI ACGGC 2 cut(s) 22, 366
BcgI CGANNNNNNTGC 2 cut(s) 718, 752
BcoDI GTCTC 1 cut(s) 300
BfaI CTAG 1 cut(s) 411
BfmI CTRYAG 1 cut(s) 957
BisI GCNGC 1 cut(s) 331
BlnI CCTAGG 1 cut(s) 410
BlsI GCNGC 1 cut(s) 332
BmiI GGNNCC 1 cut(s) 879
BmsI GCATC 2 cut(s) 342, 961
BpiI GAAGAC 1 cut(s) 860
Bpu10I CCTNAGC 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 260
BsaBI GATNNNNATC 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 3 cut(s) 410, 813, 843
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 849
Bse1I ACTGG 1 cut(s) 485
Bse3DI GCAATG 1 cut(s) 203
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 3 cut(s) 410, 813, 843
BseGI GGATG 3 cut(s) 357, 420, 952
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 1 cut(s) 849
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 1 cut(s) 485
BseXI GCAGC 1 cut(s) 342
BsgI GTGCAG 1 cut(s) 914
BshFI GGCC 2 cut(s) 381, 842
BsiSI CCGG 1 cut(s) 77
BslFI GGGAC 1 cut(s) 907
BslI CCNNNNNNNGG 1 cut(s) 849
BsmAI GTCTC 1 cut(s) 300
BsmFI GGGAC 1 cut(s) 907
BsnI GGCC 2 cut(s) 381, 842
Bso31I GGTCTC 1 cut(s) 300
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 3 cut(s) 435, 565, 616
Bsp19I CCATGG 1 cut(s) 843
BspACI CCGC 3 cut(s) 320, 433, 670
BspANI GGCC 2 cut(s) 381, 842
BspCNI CTCAG 1 cut(s) 658
BspLI GGNNCC 1 cut(s) 879
BspPI GGATC 3 cut(s) 443, 573, 611
BspTNI GGTCTC 1 cut(s) 300
BsrBI CCGCTC 1 cut(s) 670
BsrDI GCAATG 1 cut(s) 203
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 1 cut(s) 485
BssECI CCNNGG 3 cut(s) 410, 813, 843
BssMI GATC 3 cut(s) 435, 565, 616
BssT1I CCWWGG 3 cut(s) 410, 813, 843
Bst4CI ACNGT 6 cut(s) 92, 190, 427, 479, 682, 906
BstAUI TGTACA 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 666
BstDSI CCRYGG 1 cut(s) 843
BstF5I GGATG 3 cut(s) 357, 420, 952
BstKTI GATC 3 cut(s) 438, 568, 619
BstMAI GTCTC 1 cut(s) 300
BstMBI GATC 3 cut(s) 435, 565, 616
BstMWI GCNNNNNNNGC 2 cut(s) 511, 968
BstNSI RCATGY 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 957
BstV1I GCAGC 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 860
BsuRI GGCC 2 cut(s) 381, 842
BtgI CCRYGG 1 cut(s) 843
BtgZI GCGATG 2 cut(s) 242, 977
BtsCI GGATG 3 cut(s) 357, 420, 952
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 3 cut(s) 30, 66, 492
Csp6I GTAC 4 cut(s) 4, 268, 397, 688
CviAII CATG 6 cut(s) 102, 210, 252, 502, 542, 844
CviJI RGCY 9 cut(s) 47, 238, 260, 296, 381, 664, 694, 842, 971
CviKI_1 RGCY 9 cut(s) 47, 238, 260, 296, 381, 664, 694, 842, 971
CviQI GTAC 4 cut(s) 4, 268, 397, 688
DdeI CTNAG 1 cut(s) 666
DpnI GATC 3 cut(s) 437, 567, 618
DpnII GATC 3 cut(s) 435, 565, 616
EaeI YGGCCR 1 cut(s) 379
Eco130I CCWWGG 3 cut(s) 410, 813, 843
Eco31I GGTCTC 1 cut(s) 300
Eco32I GATATC 1 cut(s) 642
EcoRI GAATTC 1 cut(s) 750
EcoRV GATATC 1 cut(s) 642
EcoT14I CCWWGG 3 cut(s) 410, 813, 843
ErhI CCWWGG 3 cut(s) 410, 813, 843
FaeI CATG 6 cut(s) 105, 213, 255, 505, 545, 847
FaqI GGGAC 1 cut(s) 907
FatI CATG 6 cut(s) 101, 209, 251, 501, 541, 843
FauI CCCGC 1 cut(s) 313
Fnu4HI GCNGC 1 cut(s) 331
FokI GGATG 3 cut(s) 364, 427, 939
Fsp4HI GCNGC 1 cut(s) 331
FspBI CTAG 1 cut(s) 411
GluI GCNGC 1 cut(s) 331
HaeIII GGCC 2 cut(s) 381, 842
HapII CCGG 1 cut(s) 77
Hin1II CATG 6 cut(s) 105, 213, 255, 505, 545, 847
HincII GTYRAC 1 cut(s) 864
HindII GTYRAC 1 cut(s) 864
HinfI GANTC 8 cut(s) 203, 232, 534, 571, 581, 649, 740, 809
HpaII CCGG 1 cut(s) 77
HphI GGTGA 3 cut(s) 529, 829, 923
Hpy166II GTNNAC 4 cut(s) 482, 820, 831, 864
Hpy188I TCNGA 5 cut(s) 366, 440, 472, 570, 745
Hpy188III TCNNGA 3 cut(s) 305, 596, 881
Hpy8I GTNNAC 4 cut(s) 482, 820, 831, 864
HpyAV CCTTC 1 cut(s) 720
HpyCH4III ACNGT 6 cut(s) 92, 190, 427, 479, 682, 906
HpyCH4IV ACGT 2 cut(s) 120, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 511, 968
HpyF3I CTNAG 1 cut(s) 666
HpySE526I ACGT 2 cut(s) 120, 277
Hsp92II CATG 6 cut(s) 105, 213, 255, 505, 545, 847
Kzo9I GATC 3 cut(s) 435, 565, 616
Lsp1109I GCAGC 1 cut(s) 342
LweI GCATC 2 cut(s) 342, 961
MaeI CTAG 1 cut(s) 411
MaeII ACGT 2 cut(s) 120, 277
MaeIII GTNAC 4 cut(s) 61, 405, 497, 761
MalI GATC 3 cut(s) 437, 567, 618
MbiI CCGCTC 1 cut(s) 670
MboI GATC 3 cut(s) 435, 565, 616
MboII GAAGA 2 cut(s) 543, 865
MluCI AATT 5 cut(s) 18, 324, 750, 914, 935
MlyI GAGTC 3 cut(s) 590, 658, 749
MseI TTAA 2 cut(s) 557, 870
MslI CAYNNNNRTG 2 cut(s) 254, 504
MspA1I CMGCKG 1 cut(s) 433
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 2 cut(s) 511, 968
NcoI CCATGG 1 cut(s) 843
NdeII GATC 3 cut(s) 435, 565, 616
NlaIII CATG 6 cut(s) 105, 213, 255, 505, 545, 847
NlaIV GGNNCC 1 cut(s) 879
NmuCI GTSAC 3 cut(s) 61, 497, 761
NspI RCATGY 1 cut(s) 505
OliI CACNNNNGTG 2 cut(s) 254, 504
PfeI GAWTC 5 cut(s) 203, 232, 534, 571, 809
PflFI GACNNNGTC 2 cut(s) 90, 859
PkrI GCNGC 1 cut(s) 332
PleI GAGTC 3 cut(s) 589, 657, 748
PpsI GAGTC 3 cut(s) 589, 657, 748
PspN4I GGNNCC 1 cut(s) 879
PsyI GACNNNGTC 2 cut(s) 90, 859
RsaI GTAC 4 cut(s) 5, 269, 398, 689
RsaNI GTAC 4 cut(s) 4, 268, 397, 688
RseI CAYNNNNRTG 2 cut(s) 254, 504
SaqAI TTAA 2 cut(s) 557, 870
SatI GCNGC 1 cut(s) 331
Sau3AI GATC 3 cut(s) 435, 565, 616
SchI GAGTC 3 cut(s) 590, 658, 749
SfaNI GCATC 2 cut(s) 342, 961
SfcI CTRYAG 1 cut(s) 957
SmiMI CAYNNNNRTG 2 cut(s) 254, 504
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 5 cut(s) 18, 324, 750, 914, 935
SsiI CCGC 3 cut(s) 320, 433, 670
SspMI CTAG 1 cut(s) 411
StyI CCWWGG 3 cut(s) 410, 813, 843
TaaI ACNGT 6 cut(s) 92, 190, 427, 479, 682, 906
TaiI ACGT 2 cut(s) 123, 280
TaqI TCGA 3 cut(s) 304, 574, 738
TasI AATT 5 cut(s) 18, 324, 750, 914, 935
TatI WGTACW 1 cut(s) 267
TfiI GAWTC 5 cut(s) 203, 232, 534, 571, 809
Tru1I TTAA 2 cut(s) 557, 870
Tru9I TTAA 2 cut(s) 557, 870
TscAI CASTG 3 cut(s) 37, 66, 492
TseFI GTSAC 3 cut(s) 61, 497, 761
TseI GCWGC 1 cut(s) 330
Tsp45I GTSAC 3 cut(s) 61, 497, 761
TspDTI ATGAA 4 cut(s) 57, 155, 245, 580
TspGWI ACGGA 1 cut(s) 622
TspRI CASTG 3 cut(s) 37, 66, 492
Tth111I GACNNNGTC 2 cut(s) 90, 859
XapI RAATTY 3 cut(s) 324, 750, 935
XceI RCATGY 1 cut(s) 505
XmaJI CCTAGG 1 cut(s) 410
XspI CTAG 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.