Rroxscaffold_7G00164330

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000074
Physical Location & Seq
Reverse (-)
6323345 .. 6327993
4649 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00164330.1

Sequence Viewer

Length: 2115 bp
ATGAAGAGGAATCAATGCCCAAGGGGTAAAAGATATAGCCGAGTTGGATGCATGGCCGCATTTGGAATTCGATACTGCAAGGAAAGGAAGAAGTATTTCGTATCAAAGTTCATAACCAATCACAATCATGATGTTGCTGTTTCGGAAGAGGTTCAGTTCCTTCGTTCTCACCGAGGAGTGAATGACAGCGTCATTGCCCAGGTTGAGGCCCTACAGAAAGCACAAGTGCACATAAGCCAGATATATGAACTCCTTGTTGAGCAAGCAGGTGGGCAACAATTTCTGCCGTTCACCCTCAAAGATTTGTACAATGAACTTGATAAGAGGAAGAAAGCAGCGGGCTTAGATGGGGATGCTCATTCTGCCATCACTTGGATGCAAATCAGGGCATTGGAGGAAAAACAATTCTACTGCAAATATACAATAGATAAAGAGGGAAGGTTGGCAAACTTGTTTTGGCGGGACCGCCAATCTTTGTTGGACTACAATGCATATGGTGATGTACTAATTATGGACAGTACTTACAAAACCAATATATATGGAAAGCCTCTGGTTGTCTTTGTCGGGTGCAATAACCACCGAGCCACTGTTGTTTATGGGTTTTCCCTTATAGGCAATGAGAAGGAAGACACTTATAGTTGGGTATTTCAAAATTTTTTGGCAGCAATGAACCAAAAGCACCCGATATCAGTTTTAACAGATGGGGATGAGGCAATAAGGAATGTTGTGGAAAATCTAATGCCAACAGCCAGACATAGATTATGTGCGTGGCACATTGGGCGAAATATTGGTCAAAATGTGAAGGTTGAGGAAGTGCAGGAGAGCATTGGGAAGCTAATTTATGCTTCTTTAACGGTTCAAGAGTGGGAGGCTGCTTGGCACACACTTGTTCAGACACACGGACTTGCAAACAATGCATGGGTAACTTCTTTGTATAACAAGCGGGAACGGTGGGCTGAGGCGTATTTTCGGAATCATTTTTTTGGAGGAATGTGCAGCACACAAAGATGTGAGGGGATGCATGTGAAGCTTAAAAAACAGATTGGGAGATATACTAGGATTTGTGATGTGATGCCTAGGTTGGAGAGGACACTTGGGCGGATTCGTAATCGTGTATTGCAAGACAATTTCTTAGGTAAAACTTGTTCCCCTGTTTTAGAGACACACATGCGTGGTTTGGAGGAAGAGGCTGCCAAAATCTTCACCCATGATATATTTGTGATGATTAAGTCACAAATTCTATTTGAGAGGAGGTTTGTCGTACGCCATAGTTTTTCGTTTCCTCATTCTGACTCTATCATGTTCTACCTGACCCAATATGAGAGGACTGAACGCAGATGGTGTGTAGAATTTAGAGTCAATGAAGGGAATCCACAATGGCTATGCTCCTGCAAGCAGTTTGAATGTGATGGAATCCCTTGTGGTCACATATTTTGTGTGCTGAAGTATGAAATGGTTTCGACATATCCGAAGAGCCTGATAAGGCATAGGTGGAGCAGAGCTATTGCGGAGTCAACCATGGCACCAAATATACCGGGCAAGTTTAGTGATAAGGCTGCCCAAGTTGAAAGATATTCTGCTCTGATAGTAGAGGCCACAAAAGTATGTGTAAACTACTCTTTCAGCCGTGAAGGATTCGGTATTGGGATGATCCAATTCCAAAAGCTAAAAAAGGCTTCGATGCAATACAATATGGGTGACAAACAGCGAAATATGAATGTGGGAAACTCTCCCAACGTGGTAAGGGACCCTCCCATTGCAAGAACAAAGGGAAGCCAGAAGCAGAGACCGAGCAATACAAACCCAACCATACCTGGTCCGAAAGGGTGTGGATTATGTGGTCAACCTGGGCACAACCGTCGAATCTGTCCTAGTCTTGAGGGAGAAGAACAGAACTGCTCAGGAAATCCAGTTGTTGACCGAACAGAAGCTCAAACGGTGCCGAAGAAGAAATTTAATGAAGCTGATCTGACATGTCAACTGGCTCCTATTTTCCCATTCAATGATTCTCAGGCATATACCAATCCTCTCTGTCCATCTTTGTCGTTTGACTTGAACGAGGTCGCCTGCGCTGACATAGATGCCTCAATGTCAATACGGAGCTTTTGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

704

Amino Acids

80.79

Weight (kDa)

9.06

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 140 - 251 1.7e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 168 - 261 2.2e-25 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 257
Acc36I ACCTGC 1 cut(s) 257
AccB1I GGYRCC 2 cut(s) 1522, 1939
AccB7I CCANNNNNTGG 1 cut(s) 372
AciI CCGC 7 cut(s) 57, 338, 460, 466, 943, 1099, 1508
AclWI GGATC 1 cut(s) 1645
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 5 cut(s) 66, 652, 1236, 1349, 1952
AcuI CTGAAG 1 cut(s) 1463
AfaI GTAC 4 cut(s) 308, 504, 520, 1263
AfiI CCNNNNNNNGG 2 cut(s) 205, 372
AflIII ACRYGT 1 cut(s) 1973
AgsI TTSAA 6 cut(s) 650, 860, 1403, 1568, 2002, 2056
AjnI CCWGG 3 cut(s) 198, 1813, 1846
AleI CACNNNNGTG 1 cut(s) 1170
AluBI AGCT 7 cut(s) 835, 1030, 1502, 1666, 1931, 1964, 2103
AluI AGCT 7 cut(s) 835, 1030, 1502, 1666, 1931, 1964, 2103
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 1154, 1780
Alw44I GTGCAC 1 cut(s) 227
AlwI GGATC 1 cut(s) 1645
AoxI GGCC 3 cut(s) 54, 207, 1593
ApaLI GTGCAC 1 cut(s) 227
ApeKI GCWGC 6 cut(s) 335, 662, 872, 996, 1190, 1556
ApoI RAATTY 5 cut(s) 66, 652, 1236, 1349, 1952
ArsI GACNNNNNNTTYG 2 cut(s) 775, 807
Asp700I GAANNNNTTC 2 cut(s) 95, 150
AspA2I CCTAGG 1 cut(s) 1076
AspLEI GCGC 1 cut(s) 2072
AspS9I GGNCC 4 cut(s) 208, 463, 1747, 1817
AsuC2I CCSGG 1 cut(s) 1536
AsuHPI GGTGA 5 cut(s) 161, 283, 509, 1195, 1709
AvaII GGWCC 3 cut(s) 463, 1747, 1817
AvrII CCTAGG 1 cut(s) 1076
BaeGI GKGCMC 2 cut(s) 231, 1854
BanI GGYRCC 2 cut(s) 1522, 1939
BbsI GAAGAC 1 cut(s) 633
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 957
BbvI GCAGC 6 cut(s) 347, 674, 859, 1008, 1177, 1543
BccI CCATC 6 cut(s) 341, 374, 695, 1332, 1403, 2044
BceAI ACGGC 2 cut(s) 271, 1611
BcgI CGANNNNNNTGC 4 cut(s) 30, 64, 1841, 1875
BciT130I CCWGG 3 cut(s) 200, 1815, 1848
BcnI CCSGG 1 cut(s) 1536
BcoDI GTCTC 2 cut(s) 1154, 1780
BfaI CTAG 3 cut(s) 1056, 1077, 1872
BfmI CTRYAG 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 7 cut(s) 57, 336, 663, 873, 997, 1191, 1557
BlnI CCTAGG 1 cut(s) 1076
BlsI GCNGC 7 cut(s) 58, 337, 664, 874, 998, 1192, 1558
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 4 cut(s) 200, 1536, 1815, 1848
Bme18I GGWCC 3 cut(s) 463, 1747, 1817
BmgT120I GGNCC 4 cut(s) 208, 463, 1747, 1817
BmiI GGNNCC 6 cut(s) 464, 1524, 1748, 1749, 1941, 1986
BmrFI CCNGG 4 cut(s) 200, 1536, 1815, 1848
BmsI GCATC 7 cut(s) 38, 343, 366, 1008, 1062, 1671, 2071
BpiI GAAGAC 1 cut(s) 633
Bpu10I CCTNAGC 2 cut(s) 957, 1900
BpuEI CTTGAG 1 cut(s) 1898
BpuMI CCSGG 1 cut(s) 1536
BsaBI GATNNNNATC 1 cut(s) 380
BsaI GGTCTC 1 cut(s) 1780
BsaJI CCNNGG 6 cut(s) 20, 172, 198, 1076, 1518, 1847
Bsc4I CCNNNNNNNGG 2 cut(s) 205, 372
Bse1I ACTGG 2 cut(s) 1910, 1986
Bse3DI GCAATG 4 cut(s) 192, 622, 672, 1755
Bse8I GATNNNNATC 1 cut(s) 380
BseBI CCWGG 3 cut(s) 200, 1815, 1848
BseDI CCNNGG 6 cut(s) 20, 172, 198, 1076, 1518, 1847
BseGI GGATG 6 cut(s) 53, 358, 381, 712, 1023, 1653
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 2 cut(s) 205, 372
BseMI GCAATG 4 cut(s) 192, 622, 672, 1755
BseMII CTCAG 3 cut(s) 948, 1914, 2024
BseNI ACTGG 2 cut(s) 1910, 1986
BseRI GAGGAG 2 cut(s) 189, 1264
BseSI GKGCMC 2 cut(s) 231, 1854
BseXI GCAGC 6 cut(s) 347, 674, 859, 1008, 1177, 1543
BsgI GTGCAG 2 cut(s) 836, 1015
BshFI GGCC 3 cut(s) 56, 209, 1595
BshNI GGYRCC 2 cut(s) 1522, 1939
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 1535
BsiWI CGTACG 1 cut(s) 1261
BslFI GGGAC 2 cut(s) 476, 1760
BslI CCNNNNNNNGG 2 cut(s) 205, 372
BsmAI GTCTC 2 cut(s) 1154, 1780
BsmFI GGGAC 2 cut(s) 476, 1760
BsnI GGCC 3 cut(s) 56, 209, 1595
Bso31I GGTCTC 1 cut(s) 1780
Bsp1286I GDGCHC 2 cut(s) 231, 1854
Bsp1407I TGTACA 1 cut(s) 306
Bsp143I GATC 2 cut(s) 1650, 1966
Bsp19I CCATGG 1 cut(s) 1518
BspACI CCGC 7 cut(s) 57, 338, 460, 466, 943, 1099, 1508
BspANI GGCC 3 cut(s) 56, 209, 1595
BspCNI CTCAG 3 cut(s) 949, 1913, 2023
BspHI TCATGA 1 cut(s) 127
BspLI GGNNCC 6 cut(s) 464, 1524, 1748, 1749, 1941, 1986
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 1 cut(s) 1645
BspQI GCTCTTC 1 cut(s) 1466
BspT107I GGYRCC 2 cut(s) 1522, 1939
BspTNI GGTCTC 1 cut(s) 1780
BsrDI GCAATG 4 cut(s) 192, 622, 672, 1755
BsrGI TGTACA 1 cut(s) 306
BsrI ACTGG 2 cut(s) 1910, 1986
BssECI CCNNGG 6 cut(s) 20, 172, 198, 1076, 1518, 1847
BssMI GATC 2 cut(s) 1650, 1966
BssT1I CCWWGG 3 cut(s) 20, 1076, 1518
Bst2UI CCWGG 3 cut(s) 200, 1815, 1848
Bst4CI ACNGT 6 cut(s) 518, 589, 856, 951, 1859, 1939
Bst6I CTCTTC 3 cut(s) 141, 1179, 1466
BstAPI GCANNNNNTGC 1 cut(s) 914
BstAUI TGTACA 1 cut(s) 306
BstC8I GCNNGC 4 cut(s) 264, 340, 1394, 2068
BstDEI CTNAG 5 cut(s) 343, 957, 1132, 1900, 2010
BstDSI CCRYGG 1 cut(s) 1518
BstF5I GGATG 6 cut(s) 53, 358, 381, 712, 1023, 1653
BstHHI GCGC 1 cut(s) 2072
BstKTI GATC 2 cut(s) 1653, 1969
BstMAI GTCTC 2 cut(s) 1154, 1780
BstMBI GATC 2 cut(s) 1650, 1966
BstMWI GCNNNNNNNGC 4 cut(s) 362, 778, 914, 1027
BstNI CCWGG 3 cut(s) 200, 1815, 1848
BstNSI RCATGY 3 cut(s) 1025, 1171, 1977
BstSCI CCNGG 4 cut(s) 198, 1534, 1813, 1846
BstSFI CTRYAG 1 cut(s) 212
BstSLI GKGCMC 2 cut(s) 231, 1854
BstV1I GCAGC 6 cut(s) 347, 674, 859, 1008, 1177, 1543
BstV2I GAAGAC 1 cut(s) 633
BsuRI GGCC 3 cut(s) 56, 209, 1595
BtgI CCRYGG 1 cut(s) 1518
BtsCI GGATG 6 cut(s) 53, 358, 381, 712, 1023, 1653
BtsIMutI CAGTG 1 cut(s) 585
BveI ACCTGC 1 cut(s) 257
Cac8I GCNNGC 4 cut(s) 264, 340, 1394, 2068
CciI TCATGA 1 cut(s) 127
CfoI GCGC 1 cut(s) 2072
Cfr13I GGNCC 4 cut(s) 208, 463, 1747, 1817
CseI GACGC 1 cut(s) 178
CsiI ACCWGGT 1 cut(s) 1813
Csp6I GTAC 4 cut(s) 307, 503, 519, 1262
CviAII CATG 9 cut(s) 52, 128, 918, 1022, 1168, 1208, 1300, 1519, 1974
CviQI GTAC 4 cut(s) 307, 503, 519, 1262
DdeI CTNAG 5 cut(s) 343, 957, 1132, 1900, 2010
DpnI GATC 2 cut(s) 1652, 1968
DpnII GATC 2 cut(s) 1650, 1966
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 3 cut(s) 141, 1179, 1466
EarI CTCTTC 3 cut(s) 141, 1179, 1466
EciI GGCGGA 1 cut(s) 1114
Eco130I CCWWGG 3 cut(s) 20, 1076, 1518
Eco31I GGTCTC 1 cut(s) 1780
Eco32I GATATC 1 cut(s) 687
Eco47I GGWCC 3 cut(s) 463, 1747, 1817
Eco57I CTGAAG 1 cut(s) 1463
EcoO109I RGGNCCY 2 cut(s) 208, 1747
EcoRI GAATTC 1 cut(s) 66
EcoRII CCWGG 3 cut(s) 198, 1813, 1846
EcoRV GATATC 1 cut(s) 687
EcoT14I CCWWGG 3 cut(s) 20, 1076, 1518
EcoT22I ATGCAT 4 cut(s) 53, 493, 919, 1023
ErhI CCWWGG 3 cut(s) 20, 1076, 1518
FaeI CATG 9 cut(s) 55, 131, 921, 1025, 1171, 1211, 1303, 1522, 1977
FaqI GGGAC 2 cut(s) 476, 1760
FatI CATG 9 cut(s) 51, 127, 917, 1021, 1167, 1207, 1299, 1518, 1973
FauI CCCGC 3 cut(s) 331, 453, 936
FauNDI CATATG 1 cut(s) 493
Fnu4HI GCNGC 7 cut(s) 57, 336, 663, 873, 997, 1191, 1557
FokI GGATG 6 cut(s) 60, 365, 388, 719, 1030, 1660
Fsp4HI GCNGC 7 cut(s) 57, 336, 663, 873, 997, 1191, 1557
FspBI CTAG 3 cut(s) 1056, 1077, 1872
GlaI GCGC 1 cut(s) 2071
GluI GCNGC 7 cut(s) 57, 336, 663, 873, 997, 1191, 1557
HaeIII GGCC 3 cut(s) 56, 209, 1595
HapII CCGG 1 cut(s) 1535
HgaI GACGC 1 cut(s) 178
HhaI GCGC 1 cut(s) 2072
Hin1II CATG 9 cut(s) 55, 131, 921, 1025, 1171, 1211, 1303, 1522, 1977
Hin6I GCGC 1 cut(s) 2070
HinP1I GCGC 1 cut(s) 2070
HincII GTYRAC 4 cut(s) 1515, 1844, 1918, 1979
HindII GTYRAC 4 cut(s) 1515, 1844, 1918, 1979
HindIII AAGCTT 1 cut(s) 1028
HpaII CCGG 1 cut(s) 1535
HphI GGTGA 5 cut(s) 161, 283, 509, 1195, 1709
Hpy166II GTNNAC 7 cut(s) 229, 291, 1515, 1612, 1844, 1918, 1979
Hpy188I TCNGA 8 cut(s) 145, 894, 972, 1291, 1470, 1584, 1821, 1971
Hpy188III TCNNGA 4 cut(s) 128, 860, 1877, 1902
Hpy8I GTNNAC 7 cut(s) 229, 291, 1515, 1612, 1844, 1918, 1979
Hpy99I CGWCG 1 cut(s) 1863
HpyAV CCTTC 6 cut(s) 170, 432, 616, 796, 1358, 1625
HpyCH4III ACNGT 6 cut(s) 518, 589, 856, 951, 1859, 1939
HpyCH4IV ACGT 1 cut(s) 1737
HpyF10VI GCNNNNNNNGC 4 cut(s) 362, 778, 914, 1027
HpyF3I CTNAG 5 cut(s) 343, 957, 1132, 1900, 2010
HpySE526I ACGT 1 cut(s) 1737
Hsp92II CATG 9 cut(s) 55, 131, 921, 1025, 1171, 1211, 1303, 1522, 1977
HspAI GCGC 1 cut(s) 2070
KflI GGGWCCC 1 cut(s) 1747
Kzo9I GATC 2 cut(s) 1650, 1966
LguI GCTCTTC 1 cut(s) 1466
LmnI GCTCC 4 cut(s) 1391, 1494, 1990, 2100
Lsp1109I GCAGC 6 cut(s) 347, 674, 859, 1008, 1177, 1543
LweI GCATC 7 cut(s) 38, 343, 366, 1008, 1062, 1671, 2071
MabI ACCWGGT 1 cut(s) 1813
MaeI CTAG 3 cut(s) 1056, 1077, 1872
MaeII ACGT 1 cut(s) 1737
MaeIII GTNAC 4 cut(s) 922, 1230, 1424, 1697
MalI GATC 2 cut(s) 1652, 1968
MboI GATC 2 cut(s) 1650, 1966
MhlI GDGCHC 2 cut(s) 231, 1854
MlyI GAGTC 3 cut(s) 1286, 1365, 1520
MmeI TCCRAC 3 cut(s) 25, 459, 1062
Mph1103I ATGCAT 4 cut(s) 53, 493, 919, 1023
MroXI GAANNNNTTC 2 cut(s) 95, 150
MseI TTAA 5 cut(s) 695, 851, 1032, 1227, 1956
MslI CAYNNNNRTG 4 cut(s) 126, 374, 1006, 1170
MspA1I CMGCKG 1 cut(s) 338
MspI CCGG 1 cut(s) 1535
MspR9I CCNGG 4 cut(s) 200, 1536, 1815, 1848
MvaI CCWGG 3 cut(s) 200, 1815, 1848
MwoI GCNNNNNNNGC 4 cut(s) 362, 778, 914, 1027
NciI CCSGG 1 cut(s) 1536
NcoI CCATGG 1 cut(s) 1518
NdeI CATATG 1 cut(s) 493
NdeII GATC 2 cut(s) 1650, 1966
NlaIII CATG 9 cut(s) 55, 131, 921, 1025, 1171, 1211, 1303, 1522, 1977
NlaIV GGNNCC 6 cut(s) 464, 1524, 1748, 1749, 1941, 1986
NmeAIII GCCGAG 1 cut(s) 65
NmuCI GTSAC 3 cut(s) 1230, 1424, 1697
NsiI ATGCAT 4 cut(s) 53, 493, 919, 1023
NspI RCATGY 3 cut(s) 1025, 1171, 1977
OliI CACNNNNGTG 1 cut(s) 1170
PagI TCATGA 1 cut(s) 127
PaqCI CACCTGC 1 cut(s) 257
PciI ACATGT 1 cut(s) 1973
PciSI GCTCTTC 1 cut(s) 1466
PcsI WCGNNNNNNNCGW 2 cut(s) 169, 1466
PdmI GAANNNNTTC 2 cut(s) 95, 150
PfeI GAWTC 8 cut(s) 10, 973, 1102, 1369, 1413, 1635, 1863, 2006
Pfl23II CGTACG 1 cut(s) 1261
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 372
PkrI GCNGC 7 cut(s) 58, 337, 664, 874, 998, 1192, 1558
PleI GAGTC 3 cut(s) 1286, 1364, 1519
PpsI GAGTC 3 cut(s) 1286, 1364, 1519
PpuMI RGGWCCY 1 cut(s) 1747
PscI ACATGT 1 cut(s) 1973
Psp5II RGGWCCY 1 cut(s) 1747
Psp6I CCWGG 3 cut(s) 198, 1813, 1846
PspGI CCWGG 3 cut(s) 198, 1813, 1846
PspLI CGTACG 1 cut(s) 1261
PspN4I GGNNCC 6 cut(s) 464, 1524, 1748, 1749, 1941, 1986
PspPI GGNCC 4 cut(s) 208, 463, 1747, 1817
PspPPI RGGWCCY 1 cut(s) 1747
PsrI GAACNNNNNNTAC 2 cut(s) 1129, 1161
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 4 cut(s) 308, 504, 520, 1263
RsaNI GTAC 4 cut(s) 307, 503, 519, 1262
RseI CAYNNNNRTG 4 cut(s) 126, 374, 1006, 1170
SapI GCTCTTC 1 cut(s) 1466
SaqAI TTAA 5 cut(s) 695, 851, 1032, 1227, 1956
SatI GCNGC 7 cut(s) 57, 336, 663, 873, 997, 1191, 1557
Sau3AI GATC 2 cut(s) 1650, 1966
Sau96I GGNCC 4 cut(s) 208, 463, 1747, 1817
ScaI AGTACT 1 cut(s) 520
SchI GAGTC 3 cut(s) 1286, 1365, 1520
ScrFI CCNGG 4 cut(s) 200, 1536, 1815, 1848
SduI GDGCHC 2 cut(s) 231, 1854
SexAI ACCWGGT 1 cut(s) 1813
SfaNI GCATC 7 cut(s) 38, 343, 366, 1008, 1062, 1671, 2071
SfcI CTRYAG 1 cut(s) 212
SinI GGWCC 3 cut(s) 463, 1747, 1817
SmiMI CAYNNNNRTG 4 cut(s) 126, 374, 1006, 1170
SmlI CTYRAG 1 cut(s) 1877
SmoI CTYRAG 1 cut(s) 1877
SsiI CCGC 7 cut(s) 57, 338, 460, 466, 943, 1099, 1508
SspI AATATT 1 cut(s) 787
SspMI CTAG 3 cut(s) 1056, 1077, 1872
StyD4I CCNGG 4 cut(s) 198, 1534, 1813, 1846
StyI CCWWGG 3 cut(s) 20, 1076, 1518
TaaI ACNGT 6 cut(s) 518, 589, 856, 951, 1859, 1939
TaiI ACGT 1 cut(s) 1740
TaqI TCGA 4 cut(s) 70, 1460, 1679, 1861
TaqII GACCGA 2 cut(s) 1804, 1935
TatI WGTACW 3 cut(s) 306, 502, 518
TauI GCSGC 1 cut(s) 59
TfiI GAWTC 8 cut(s) 10, 973, 1102, 1369, 1413, 1635, 1863, 2006
Tru1I TTAA 5 cut(s) 695, 851, 1032, 1227, 1956
Tru9I TTAA 5 cut(s) 695, 851, 1032, 1227, 1956
TscAI CASTG 1 cut(s) 592
TseFI GTSAC 3 cut(s) 1230, 1424, 1697
TseI GCWGC 6 cut(s) 335, 662, 872, 996, 1190, 1556
Tsp45I GTSAC 3 cut(s) 1230, 1424, 1697
TspDTI ATGAA 9 cut(s) 17, 100, 261, 327, 683, 1377, 1464, 1730, 1974
TspGWI ACGGA 2 cut(s) 915, 2113
TspRI CASTG 1 cut(s) 592
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 372
VneI GTGCAC 1 cut(s) 227
VpaK11BI GGWCC 3 cut(s) 463, 1747, 1817
XapI RAATTY 5 cut(s) 66, 652, 1236, 1349, 1952
XceI RCATGY 3 cut(s) 1025, 1171, 1977
XmaJI CCTAGG 1 cut(s) 1076
XmnI GAANNNNTTC 2 cut(s) 95, 150
XspI CTAG 3 cut(s) 1056, 1077, 1872
ZrmI AGTACT 1 cut(s) 520
Zsp2I ATGCAT 4 cut(s) 53, 493, 919, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.