FvH4_4g04121

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
3570698 .. 3571390
693 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g04121.t1

Sequence Viewer

Length: 693 bp
ATGGATGATAATGGCTTGCGGTTTTCAGAATCTAATTATTACGATTCAGTGGAAAATGAAGAGGTCCAATCTGAGGAAGAAGATTTGGAGGATGAACCGGAAGAGACTCTTGTATCAAACTCGGTTGATACGCAAAACTGCTTACACTATAAGGGGAAGCGGTATGAAGATCTTAGATATGAAGATTTGAAAGAAGTTGACTTCGAATCTGTGGAAGAAGTGGACACATTCTATTCTTTTTATTCACTTGCAATGGGTTTTAGCTTTCGAAAGGAGAAGTTGGACAAAAATATATATGGGATTGTGGTCAGAAGGCAGTTGGTTTGTTCTAAGGAAGGCACTAGAAAGAAAAATGGTCCTCCTAAGGATAATCCAGTATCACACAACCTAGGCTCGAGAACATCCTTTATGAAATCTGTTGGCATACCTGAAAAAGGGAAGCAGAGAAATTCTCAAGACATGCAAGCTGAGGAGGAGGGCGGTAACCCCAACAAAAGAAAGTGTCCACATTCTCACAGAGAAACAAGAGGGGATTGTCTTGCCCGCCTAACTGTTAAGAGATGCAATAAAACAGGTAAGTTCCGAGCTGCTGAATTCATTACAGAACACAATCATGCTCTCACTCCAACTGAGATGAAATCGTTTGTTTGGAGGCTTGCTCTCTGTTTGGAGGCTAGTTGGTGTTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

231

Amino Acids

26.66

Weight (kDa)

5.53

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 76 - 119 2.9e-06 FAR1 DNA-binding domain
FAR1 PF03101 151 - 208 4.6e-06 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 19, 160, 480, 544
AcsI RAATTY 2 cut(s) 448, 593
AfiI CCNNNNNNNGG 2 cut(s) 73, 434
AgsI TTSAA 1 cut(s) 190
AluBI AGCT 3 cut(s) 264, 467, 587
AluI AGCT 3 cut(s) 264, 467, 587
Alw26I GTCTC 1 cut(s) 98
Ama87I CYCGRG 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 2 cut(s) 448, 593
AspA2I CCTAGG 1 cut(s) 388
AspS9I GGNCC 2 cut(s) 64, 356
AsuII TTCGAA 2 cut(s) 204, 268
AvaI CYCGRG 1 cut(s) 394
AvaII GGWCC 2 cut(s) 64, 356
AvrII CCTAGG 1 cut(s) 388
AxyI CCTNAGG 1 cut(s) 363
BaeI ACNNNNGTAYC 2 cut(s) 96, 129
BbvCI CCTCAGC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 574
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 3 cut(s) 342, 389, 675
BglII AGATCT 1 cut(s) 169
BisI GCNGC 1 cut(s) 588
BlnI CCTAGG 1 cut(s) 388
BlsI GCNGC 1 cut(s) 589
Bme18I GGWCC 2 cut(s) 64, 356
BmeT110I CYCGRG 1 cut(s) 394
BmgT120I GGNCC 2 cut(s) 64, 356
BmsI GCATC 1 cut(s) 551
BplI GAGNNNNNCTC 4 cut(s) 436, 468, 643, 675
Bpu10I CCTNAGC 1 cut(s) 468
Bpu14I TTCGAA 2 cut(s) 204, 268
BpuEI CTTGAG 1 cut(s) 438
BsaJI CCNNGG 1 cut(s) 388
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 434
Bse1I ACTGG 1 cut(s) 374
Bse21I CCTNAGG 1 cut(s) 363
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 3 cut(s) 10, 97, 401
BseLI CCNNNNNNNGG 2 cut(s) 73, 434
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 3 cut(s) 63, 459, 621
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 2 cut(s) 485, 488
BseXI GCAGC 1 cut(s) 574
BsiHKCI CYCGRG 1 cut(s) 394
BsiSI CCGG 1 cut(s) 98
BslI CCNNNNNNNGG 2 cut(s) 73, 434
BsmAI GTCTC 1 cut(s) 98
BsoBI CYCGRG 1 cut(s) 394
Bsp119I TTCGAA 2 cut(s) 204, 268
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 4 cut(s) 19, 160, 480, 544
BspCNI CTCAG 3 cut(s) 64, 460, 622
BspT104I TTCGAA 2 cut(s) 204, 268
BsrDI GCAATG 1 cut(s) 258
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 388
Bst4CI ACNGT 1 cut(s) 553
Bst6I CTCTTC 2 cut(s) 54, 96
BstBI TTCGAA 2 cut(s) 204, 268
BstC8I GCNNGC 4 cut(s) 17, 465, 544, 657
BstDEI CTNAG 6 cut(s) 72, 173, 330, 363, 468, 630
BstEII GGTNACC 1 cut(s) 482
BstENI CCTNNNNNAGG 1 cut(s) 432
BstF5I GGATG 3 cut(s) 10, 97, 401
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 463
BstPI GGTNACC 1 cut(s) 482
BstV1I GCAGC 1 cut(s) 574
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
Bsu36I CCTNAGG 1 cut(s) 363
BtsCI GGATG 3 cut(s) 10, 97, 401
BtsIMutI CAGTG 1 cut(s) 54
Cac8I GCNNGC 4 cut(s) 17, 465, 544, 657
Cfr13I GGNCC 2 cut(s) 64, 356
CviAII CATG 2 cut(s) 460, 614
CviJI RGCY 7 cut(s) 15, 264, 393, 467, 587, 655, 674
CviKI_1 RGCY 7 cut(s) 15, 264, 393, 467, 587, 655, 674
DdeI CTNAG 6 cut(s) 72, 173, 330, 363, 468, 630
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 54, 96
EarI CTCTTC 2 cut(s) 54, 96
Eco130I CCWWGG 1 cut(s) 388
Eco47I GGWCC 2 cut(s) 64, 356
Eco81I CCTNAGG 1 cut(s) 363
Eco88I CYCGRG 1 cut(s) 394
Eco91I GGTNACC 1 cut(s) 482
EcoNI CCTNNNNNAGG 1 cut(s) 432
EcoO65I GGTNACC 1 cut(s) 482
EcoRI GAATTC 1 cut(s) 593
EcoT14I CCWWGG 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 2 cut(s) 463, 617
FalI AAGNNNNNCTT 2 cut(s) 93, 125
FatI CATG 2 cut(s) 459, 613
FauI CCCGC 1 cut(s) 551
Fnu4HI GCNGC 1 cut(s) 588
FokI GGATG 3 cut(s) 17, 104, 388
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 3 cut(s) 342, 389, 675
GluI GCNGC 1 cut(s) 588
HapII CCGG 1 cut(s) 98
Hin1II CATG 2 cut(s) 463, 617
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 4 cut(s) 29, 44, 106, 206
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 3 cut(s) 199, 223, 506
Hpy188I TCNGA 4 cut(s) 28, 73, 311, 584
Hpy188III TCNNGA 2 cut(s) 396, 455
Hpy8I GTNNAC 3 cut(s) 199, 223, 506
HpyAV CCTTC 2 cut(s) 306, 329
HpyCH4III ACNGT 1 cut(s) 553
HpyCH4V TGCA 3 cut(s) 251, 463, 564
HpyF3I CTNAG 6 cut(s) 72, 173, 330, 363, 468, 630
Hsp92II CATG 2 cut(s) 463, 617
Kzo9I GATC 1 cut(s) 169
LpnPI CCDG 4 cut(s) 111, 387, 441, 558
Lsp1109I GCAGC 1 cut(s) 574
LweI GCATC 1 cut(s) 551
MaeI CTAG 3 cut(s) 342, 389, 675
MaeIII GTNAC 1 cut(s) 482
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 7 cut(s) 71, 89, 92, 113, 179, 194, 227
MflI RGATCY 1 cut(s) 169
MluCI AATT 3 cut(s) 34, 448, 593
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 2 cut(s) 261, 650
MseI TTAA 2 cut(s) 555, 691
MslI CAYNNNNRTG 1 cut(s) 612
MspI CCGG 1 cut(s) 98
NdeII GATC 1 cut(s) 169
NlaIII CATG 2 cut(s) 463, 617
NspI RCATGY 1 cut(s) 463
NspV TTCGAA 2 cut(s) 204, 268
PaeR7I CTCGAG 1 cut(s) 394
PfeI GAWTC 3 cut(s) 29, 44, 206
PkrI GCNGC 1 cut(s) 589
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PspEI GGTNACC 1 cut(s) 482
PspPI GGNCC 2 cut(s) 64, 356
PsuI RGATCY 1 cut(s) 169
RseI CAYNNNNRTG 1 cut(s) 612
SaqAI TTAA 2 cut(s) 555, 691
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 64, 356
SchI GAGTC 1 cut(s) 100
SetI ASST 7 cut(s) 66, 266, 390, 430, 469, 577, 589
SfaNI GCATC 1 cut(s) 551
Sfr274I CTCGAG 1 cut(s) 394
SfuI TTCGAA 2 cut(s) 204, 268
SinI GGWCC 2 cut(s) 64, 356
SlaI CTCGAG 1 cut(s) 394
SmiMI CAYNNNNRTG 1 cut(s) 612
SmlI CTYRAG 2 cut(s) 394, 453
SmoI CTYRAG 2 cut(s) 394, 453
Sse9I AATT 3 cut(s) 34, 448, 593
SsiI CCGC 4 cut(s) 19, 160, 480, 544
SspMI CTAG 3 cut(s) 342, 389, 675
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 553
TaqI TCGA 3 cut(s) 204, 268, 395
TasI AATT 3 cut(s) 34, 448, 593
TfiI GAWTC 3 cut(s) 29, 44, 206
Tru1I TTAA 2 cut(s) 555, 691
Tru9I TTAA 2 cut(s) 555, 691
TscAI CASTG 1 cut(s) 54
TseI GCWGC 1 cut(s) 587
TspDTI ATGAA 7 cut(s) 72, 108, 180, 195, 425, 586, 650
TspRI CASTG 1 cut(s) 54
VpaK11BI GGWCC 2 cut(s) 64, 356
XagI CCTNNNNNAGG 1 cut(s) 432
XapI RAATTY 2 cut(s) 448, 593
XceI RCATGY 1 cut(s) 463
XhoI CTCGAG 1 cut(s) 394
XmaJI CCTAGG 1 cut(s) 388
XspI CTAG 3 cut(s) 342, 389, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.