Rh2AG642000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000074
Physical Location & Seq
Forward (+)
86489902 .. 86490285
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG642000.1

Sequence Viewer

Length: 384 bp
ATGCCTTCTAATCCTTCCACAAACACTGAAAATGGAACCACTGGGCAACGTGTGTGCCGATTATGTTTCATGCCCGGTCACAACAGGTGCACATGTCCTGGTCGAGATGAAGTTGCTCCCGCTCGTGAAGAAGTGCCTTCAACGGGTTCAGTACCTCACCCCGCAGATTCAGTCAATCAGTCCACACATTCAGTAGCTGATCCGGCATCGTCAGTCCCTTATCCAGCACGGTGCGTCCCTCAGCCAGACCGTTCCTTCCTGCAGCCTGCACCCCTGCCGATGCTGATGGGGATGGTGTTAGCCAGATGTGTGATTTGGCAGAATTCCCACCCTTCTTTGCTTCCCAGTAGTCATCCTCACTTGGTGCTCTGCATCTACCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.69

Weight (kDa)

6.98

Isoelectric Point (pI)

63.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 122
AciI CCGC 2 cut(s) 120, 162
AclWI GGATC 1 cut(s) 194
AcsI RAATTY 1 cut(s) 322
AdeI CACNNNGTG 1 cut(s) 364
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 143
AflIII ACRYGT 2 cut(s) 49, 92
AgsI TTSAA 1 cut(s) 141
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
Alw21I GWGCWC 2 cut(s) 92, 369
Alw44I GTGCAC 1 cut(s) 88
AlwI GGATC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 197
ApaLI GTGCAC 1 cut(s) 88
ApeKI GCWGC 1 cut(s) 262
ApoI RAATTY 1 cut(s) 322
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 149
BaeGI GKGCMC 1 cut(s) 92
BauI CACGAG 1 cut(s) 123
Bbv12I GWGCWC 2 cut(s) 92, 369
BbvCI CCTCAGC 1 cut(s) 240
BbvI GCAGC 1 cut(s) 274
BccI CCATC 2 cut(s) 280, 286
BciT130I CCWGG 1 cut(s) 99
BcnI CCSGG 1 cut(s) 75
BfmI CTRYAG 1 cut(s) 260
BisI GCNGC 1 cut(s) 263
BlsI GCNGC 1 cut(s) 264
Bme1390I CCNGG 2 cut(s) 75, 99
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 75, 99
BmrI ACTGGG 2 cut(s) 51, 339
BmsI GCATC 2 cut(s) 215, 270
BmuI ACTGGG 2 cut(s) 51, 339
Bpu10I CCTNAGC 1 cut(s) 240
BpuMI CCSGG 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 2 cut(s) 46, 345
BseBI CCWGG 1 cut(s) 99
BseGI GGATG 2 cut(s) 297, 352
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 2 cut(s) 46, 345
BseSI GKGCMC 1 cut(s) 92
BseXI GCAGC 1 cut(s) 274
BsgI GTGCAG 1 cut(s) 252
BsiHKAI GWGCWC 2 cut(s) 92, 369
BsiSI CCGG 2 cut(s) 75, 203
BslFI GGGAC 2 cut(s) 200, 221
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 2 cut(s) 200, 221
Bsp1286I GDGCHC 2 cut(s) 92, 369
Bsp143I GATC 1 cut(s) 199
BspACI CCGC 2 cut(s) 120, 162
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 264
BspPI GGATC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 122
BsrI ACTGG 2 cut(s) 46, 345
BssMI GATC 1 cut(s) 199
BssSI CACGAG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 123
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 2 cut(s) 231, 251
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 2 cut(s) 297, 352
BstKTI GATC 1 cut(s) 202
BstMBI GATC 1 cut(s) 199
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 99
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 2 cut(s) 73, 97
BstSFI CTRYAG 1 cut(s) 260
BstSLI GKGCMC 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 297, 352
BtsIMutI CAGTG 2 cut(s) 24, 39
Cac8I GCNNGC 1 cut(s) 267
CaiI CAGNNNCTG 1 cut(s) 197
CseI GACGC 1 cut(s) 223
Csp6I GTAC 1 cut(s) 152
CviAII CATG 2 cut(s) 70, 93
CviJI RGCY 4 cut(s) 197, 244, 265, 302
CviKI_1 RGCY 4 cut(s) 197, 244, 265, 302
CviQI GTAC 1 cut(s) 152
DdeI CTNAG 1 cut(s) 240
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
DraIII CACNNNGTG 1 cut(s) 364
EcoRI GAATTC 1 cut(s) 322
EcoRII CCWGG 1 cut(s) 97
FaeI CATG 2 cut(s) 73, 96
FaiI YATR 3 cut(s) 64, 71, 94
FaqI GGGAC 2 cut(s) 200, 221
FatI CATG 2 cut(s) 69, 92
FauI CCCGC 2 cut(s) 127, 169
Fnu4HI GCNGC 1 cut(s) 263
FokI GGATG 2 cut(s) 304, 339
Fsp4HI GCNGC 1 cut(s) 263
GluI GCNGC 1 cut(s) 263
HapII CCGG 2 cut(s) 75, 203
HgaI GACGC 1 cut(s) 223
Hin1II CATG 2 cut(s) 73, 96
HinfI GANTC 1 cut(s) 167
HpaII CCGG 2 cut(s) 75, 203
HphI GGTGA 1 cut(s) 149
Hpy166II GTNNAC 2 cut(s) 90, 183
Hpy188III TCNNGA 2 cut(s) 104, 125
Hpy8I GTNNAC 2 cut(s) 90, 183
HpyAV CCTTC 5 cut(s) 15, 24, 147, 265, 342
HpyCH4III ACNGT 2 cut(s) 231, 251
HpyCH4IV ACGT 1 cut(s) 49
HpyCH4V TGCA 4 cut(s) 90, 262, 269, 372
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 49
Hsp92II CATG 2 cut(s) 73, 96
Kzo9I GATC 1 cut(s) 199
LmnI GCTCC 1 cut(s) 121
Lsp1109I GCAGC 1 cut(s) 274
LweI GCATC 2 cut(s) 215, 270
MaeII ACGT 1 cut(s) 49
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 201
MbiI CCGCTC 1 cut(s) 122
MboI GATC 1 cut(s) 199
MboII GAAGA 1 cut(s) 140
MhlI GDGCHC 2 cut(s) 92, 369
MluCI AATT 1 cut(s) 322
MnlI CCTC 3 cut(s) 165, 249, 366
MspI CCGG 2 cut(s) 75, 203
MspR9I CCNGG 2 cut(s) 75, 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 75
NdeII GATC 1 cut(s) 199
NlaIII CATG 2 cut(s) 73, 96
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 96
PciI ACATGT 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 55
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 264
PscI ACATGT 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 37
PstI CTGCAG 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 197
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SatI GCNGC 1 cut(s) 263
Sau3AI GATC 1 cut(s) 199
ScrFI CCNGG 2 cut(s) 75, 99
SduI GDGCHC 2 cut(s) 92, 369
SetI ASST 4 cut(s) 52, 89, 157, 199
SfaNI GCATC 2 cut(s) 215, 270
SfcI CTRYAG 1 cut(s) 260
Sse9I AATT 1 cut(s) 322
SsiI CCGC 2 cut(s) 120, 162
StyD4I CCNGG 2 cut(s) 73, 97
TaaI ACNGT 2 cut(s) 231, 251
TaiI ACGT 1 cut(s) 52
TaqI TCGA 1 cut(s) 103
TasI AATT 1 cut(s) 322
TfiI GAWTC 1 cut(s) 167
TscAI CASTG 2 cut(s) 31, 46
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 262
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 58, 123
TspRI CASTG 2 cut(s) 31, 46
VneI GTGCAC 1 cut(s) 88
XapI RAATTY 1 cut(s) 322
XceI RCATGY 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.