Rorug04G0031800

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000074
Physical Location & Seq
Forward (+)
4652293 .. 4655577
3285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0031800.1

Sequence Viewer

Length: 1755 bp
ATGTGTACACTTAAGGGAATCTCCTGCGAGATGCAATGCAAGCCTCCTGGTGAGGAAATCGCCCACAAGACAACACTGGCAATACTCAACAAGCTCTCAAAGTATTCATGGGAAGCAAAGGCATCACTGACCCTAGCAGCTTTTGCTATGGAATATGGTGAATTCTGGCTCCTTGCACAGCTTCGCGAATCAGACTACCTTGCCAAATCAATTGCAATTCTCAAACGAGTCCCTGTTCTCCTCAAGCCTTTGGAGCTGCCCAAGCGCAGGCAATCTATACTTGAGCTTAACAATCTGATCAAGGCCACATTACAAGTGATTGAATGCATCGACCAGTTCAACAAGCTTTCCATTTATGACCCAAAAGATGTCCCCGGTTTGTCGATAGCATTGGATCATATTCCAGTGGATGTCTATTGGACTATCATGACTGTTGTGGCTTGTACCACTAAGATCACTATACTCACTAGTGATGAGGATAAGGAATATGATCTATCTTCCTATTCTCAAAAAATCCACTATGTCCTTAACAAGCTCAAGATACAGCTAATAGTTTGCAGAAAACAAATTGAGGAGGCAGAGATTTACAAAAGGCTCATAAAAATGTTCCGAACACCTACTGAAATTGTGGAAGTTTTTAAGGGTTTGATATTTACAAAGGATAATGTCCAGCCACTCATTGATGGTTCCACTAAACAAATGGTTAACATCGACATCCTAAGGAGAAAGAATGTGCTATTATTCATTTCCAGCCTAGACATTACGGATGACGACATTTCGATTCTAAAACCGATCCATGAGTTCACAAAGAAAGACAGTCAGTATAAGATTGTCTGGATACCAATTGTGGAGCAATGGACTGATGACCTGAGAAAGAAGTTTGATATCCTAAAGAACAAGATGCCGTGGTTTACGGTGCAGTACTCTGGACCTATAGCAGGCATCAAGTTCATCAAGGAGGAGTGGAACTTCAAGGGTAAGCCTGCATTGGTGGTGATGAACCCGCAAGGAAAGGTCGAACACCCTAACGCTCTCCACATGATTCGGGTATGGGGAGTCAAGGCCTTCCCTTTCACAGAGACAACCGAAAAAGAACTGTCACATTCTCATGGAAATAAATGGGTTGCCTTTGTAGTTGATGGAATTCACCCATCTGTGCCAGCTTGGATCAAAGAAGATAAGTACATCTTCTTCTATGGCGGTAAAGACAACGAATGGATTCAGCAATTTACTAAGAAAGCCACTGCCCTTGCAAATGATCCAATCTTCAAGGAAGCAAAGATTCACATAGAGTTGGTTTGTGTCGGAAAAGGCAGCAAAGGAGAAGATGACCATGGCATTCTGGGCCGCTTCTGGACCGCTGTAGAAAGCCTGTTCTTCACCAAAGTCCACAATCAGGTCGACCCGGTCAGTCAAGAAATCCAGAAGCTTCTCTCTTACAAAAACGAAAGTGGATGGGCGGTGCTTAGCAAAGGGTCGACTGTATTGGTCACAGGTCATGGTGTCTCCGTGTTGAAGGCGGTAGAGGACTCTGAGAAATGGAAGGACCATGTCAAGGAGAGAGGGTTTGAGTTTTGTTTCAAGGCCTATTATGGGAGGATTATTCAGGCTAGTCGACCTTGCTGCCGTCTGGACATTCCGGGGTCTAACAGAAAGGTCCCGGAGACGATGAAGTGTCCGGATTGCCACAGGAGTATGGAGACTTTTATCAGTTACAAGTGCTGCCACATTGATGGTCCTAACGCACATCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

584

Amino Acids

66.94

Weight (kDa)

8.67

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SEO_N PF14576 2 - 206 1.8e-69 Sieve element occlusion N-terminus
SEO_C PF14577 375 - 443 5.7e-16 Sieve element occlusion C-terminus
SEO_C PF14577 451 - 576 7.4e-33 Sieve element occlusion C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 1401, 1478, 1615
AccII CGCG 1 cut(s) 186
AccIII TCCGGA 1 cut(s) 1678
AciI CCGC 6 cut(s) 1004, 1200, 1348, 1359, 1460, 1520
AclWI GGATC 4 cut(s) 402, 787, 1175, 1253
AcsI RAATTY 2 cut(s) 161, 1143
AfaI GTAC 4 cut(s) 7, 445, 923, 1184
AfiI CCNNNNNNNGG 5 cut(s) 267, 938, 1396, 1555, 1593
AflII CTTAAG 1 cut(s) 11
AgsI TTSAA 6 cut(s) 323, 340, 973, 1270, 1516, 1582
AhlI ACTAGT 1 cut(s) 467
AjnI CCWGG 1 cut(s) 46
Alw26I GTCTC 4 cut(s) 1073, 1510, 1658, 1694
AlwI GGATC 4 cut(s) 402, 787, 1175, 1253
Aor13HI TCCGGA 1 cut(s) 1678
AoxI GGCC 4 cut(s) 303, 1062, 1345, 1584
ApeKI GCWGC 5 cut(s) 137, 256, 1314, 1623, 1722
ApoI RAATTY 2 cut(s) 161, 1143
Asp700I GAANNNNTTC 1 cut(s) 1218
AspLEI GCGC 1 cut(s) 267
AspS9I GGNCC 6 cut(s) 929, 1345, 1356, 1546, 1657, 1736
AsuC2I CCSGG 4 cut(s) 375, 1406, 1641, 1661
AsuHPI GGTGA 5 cut(s) 62, 170, 1006, 1139, 1372
AvaII GGWCC 5 cut(s) 929, 1356, 1546, 1657, 1736
AxyI CCTNAGG 1 cut(s) 719
BarI GAAGNNNNNNTAC 2 cut(s) 1175, 1207
BbvI GCAGC 5 cut(s) 149, 243, 1326, 1610, 1709
BccI CCATC 5 cut(s) 677, 1133, 1159, 1449, 1727
BceAI ACGGC 2 cut(s) 889, 1611
BcgI CGANNNNNNTGC 2 cut(s) 1605, 1639
BciT130I CCWGG 1 cut(s) 48
BciVI GTATCC 1 cut(s) 831
BclI TGATCA 1 cut(s) 297
BcnI CCSGG 4 cut(s) 375, 1406, 1641, 1661
BcoDI GTCTC 4 cut(s) 1073, 1510, 1658, 1694
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 4 cut(s) 134, 468, 755, 1611
BfmI CTRYAG 2 cut(s) 933, 1362
BfrI CTTAAG 1 cut(s) 11
BfuI GTATCC 1 cut(s) 831
BisI GCNGC 6 cut(s) 138, 257, 1315, 1348, 1624, 1723
BlpI GCTNAGC 1 cut(s) 1466
BlsI GCNGC 6 cut(s) 139, 258, 1316, 1349, 1625, 1724
BmcAI AGTACT 1 cut(s) 923
Bme1390I CCNGG 5 cut(s) 48, 375, 1406, 1641, 1661
Bme18I GGWCC 5 cut(s) 929, 1356, 1546, 1657, 1736
BmgT120I GGNCC 6 cut(s) 929, 1345, 1356, 1546, 1657, 1736
BmiI GGNNCC 3 cut(s) 170, 688, 1659
BmrFI CCNGG 5 cut(s) 48, 375, 1406, 1641, 1661
BmsI GCATC 5 cut(s) 21, 131, 336, 891, 951
Bpu1102I GCTNAGC 1 cut(s) 1466
BpuEI CTTGAG 3 cut(s) 227, 302, 521
BpuMI CCSGG 4 cut(s) 375, 1406, 1641, 1661
BsaJI CCNNGG 4 cut(s) 373, 905, 1333, 1640
BsaWI WCCGGW 1 cut(s) 1678
BsaXI ACNNNNNCTCC 2 cut(s) 1550, 1580
Bsc4I CCNNNNNNNGG 5 cut(s) 267, 938, 1396, 1555, 1593
Bse1I ACTGG 3 cut(s) 81, 334, 404
Bse21I CCTNAGG 1 cut(s) 719
Bse3DI GCAATG 2 cut(s) 41, 860
BseAI TCCGGA 1 cut(s) 1678
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 4 cut(s) 373, 905, 1333, 1640
BseGI GGATG 4 cut(s) 415, 714, 772, 1460
BseLI CCNNNNNNNGG 5 cut(s) 267, 938, 1396, 1555, 1593
BseMI GCAATG 2 cut(s) 41, 860
BseMII CTCAG 2 cut(s) 860, 1524
BseNI ACTGG 3 cut(s) 81, 334, 404
BseRI GAGGAG 3 cut(s) 230, 587, 974
BseXI GCAGC 5 cut(s) 149, 243, 1326, 1610, 1709
BsgI GTGCAG 1 cut(s) 938
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 4 cut(s) 305, 1064, 1347, 1586
BsiSI CCGG 5 cut(s) 375, 1406, 1640, 1661, 1679
BslFI GGGAC 3 cut(s) 215, 356, 1643
BslI CCNNNNNNNGG 5 cut(s) 267, 938, 1396, 1555, 1593
BsmAI GTCTC 4 cut(s) 1073, 1510, 1658, 1694
BsmBI CGTCTC 1 cut(s) 1658
BsmFI GGGAC 3 cut(s) 215, 356, 1643
BsmI GAATGC 2 cut(s) 329, 1338
BsnI GGCC 4 cut(s) 305, 1064, 1347, 1586
Bsp13I TCCGGA 1 cut(s) 1678
Bsp1407I TGTACA 1 cut(s) 5
Bsp143I GATC 7 cut(s) 297, 394, 453, 490, 792, 1167, 1258
Bsp1720I GCTNAGC 1 cut(s) 1466
Bsp19I CCATGG 1 cut(s) 1333
Bsp68I TCGCGA 1 cut(s) 186
BspACI CCGC 6 cut(s) 1004, 1200, 1348, 1359, 1460, 1520
BspANI GGCC 4 cut(s) 305, 1064, 1347, 1586
BspCNI CTCAG 2 cut(s) 861, 1525
BspEI TCCGGA 1 cut(s) 1678
BspFNI CGCG 1 cut(s) 186
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 3 cut(s) 170, 688, 1659
BspPI GGATC 4 cut(s) 402, 787, 1175, 1253
BspTI CTTAAG 1 cut(s) 11
BsrDI GCAATG 2 cut(s) 41, 860
BsrGI TGTACA 1 cut(s) 5
BsrI ACTGG 3 cut(s) 81, 334, 404
BssECI CCNNGG 4 cut(s) 373, 905, 1333, 1640
BssMI GATC 7 cut(s) 297, 394, 453, 490, 792, 1167, 1258
BssT1I CCWWGG 1 cut(s) 1333
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 5 cut(s) 433, 818, 916, 1098, 1483
BstAFI CTTAAG 1 cut(s) 11
BstAPI GCANNNNNTGC 1 cut(s) 143
BstAUI TGTACA 1 cut(s) 5
BstC8I GCNNGC 5 cut(s) 41, 269, 940, 984, 1161
BstDEI CTNAG 6 cut(s) 450, 719, 869, 1233, 1466, 1533
BstDSI CCRYGG 2 cut(s) 905, 1333
BstENI CCTNNNNNAGG 1 cut(s) 936
BstF5I GGATG 4 cut(s) 415, 714, 772, 1460
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 1 cut(s) 267
BstKTI GATC 7 cut(s) 300, 397, 456, 493, 795, 1170, 1261
BstMAI GTCTC 4 cut(s) 1073, 1510, 1658, 1694
BstMBI GATC 7 cut(s) 297, 394, 453, 490, 792, 1167, 1258
BstMWI GCNNNNNNNGC 5 cut(s) 40, 143, 253, 262, 1344
BstNI CCWGG 1 cut(s) 48
BstSCI CCNGG 5 cut(s) 46, 373, 1404, 1639, 1659
BstSFI CTRYAG 2 cut(s) 933, 1362
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 5 cut(s) 149, 243, 1326, 1610, 1709
BstXI CCANNNNNNTGG 1 cut(s) 1733
Bsu36I CCTNAGG 1 cut(s) 719
BsuI GTATCC 1 cut(s) 831
BsuRI GGCC 4 cut(s) 305, 1064, 1347, 1586
BtgI CCRYGG 2 cut(s) 905, 1333
BtsCI GGATG 4 cut(s) 415, 714, 772, 1460
BtsI GCAGTG 1 cut(s) 1242
BtsIMutI CAGTG 4 cut(s) 74, 125, 411, 1242
BtuMI TCGCGA 1 cut(s) 186
Cac8I GCNNGC 5 cut(s) 41, 269, 940, 984, 1161
CciI TCATGA 1 cut(s) 426
CfoI GCGC 1 cut(s) 267
Cfr13I GGNCC 6 cut(s) 929, 1345, 1356, 1546, 1657, 1736
Csp6I GTAC 4 cut(s) 6, 444, 922, 1183
CspCI CAANNNNNGTGG 2 cut(s) 1231, 1266
CviAII CATG 8 cut(s) 108, 427, 797, 1039, 1109, 1334, 1499, 1550
CviQI GTAC 4 cut(s) 6, 444, 922, 1183
DdeI CTNAG 6 cut(s) 450, 719, 869, 1233, 1466, 1533
DpnI GATC 7 cut(s) 299, 396, 455, 492, 794, 1169, 1260
DpnII GATC 7 cut(s) 297, 394, 453, 490, 792, 1167, 1258
Eco130I CCWWGG 1 cut(s) 1333
Eco147I AGGCCT 2 cut(s) 1064, 1586
Eco32I GATATC 1 cut(s) 886
Eco47I GGWCC 5 cut(s) 929, 1356, 1546, 1657, 1736
Eco81I CCTNAGG 1 cut(s) 719
EcoNI CCTNNNNNAGG 1 cut(s) 936
EcoO109I RGGNCCY 1 cut(s) 1657
EcoRI GAATTC 2 cut(s) 161, 1143
EcoRII CCWGG 1 cut(s) 46
EcoRV GATATC 1 cut(s) 886
EcoT14I CCWWGG 1 cut(s) 1333
EcoT22I ATGCAT 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 1333
Esp3I CGTCTC 1 cut(s) 1658
FaeI CATG 8 cut(s) 111, 430, 800, 1042, 1112, 1337, 1502, 1553
FalI AAGNNNNNCTT 2 cut(s) 1172, 1204
FaqI GGGAC 3 cut(s) 215, 356, 1643
FatI CATG 8 cut(s) 107, 426, 796, 1038, 1108, 1333, 1498, 1549
FauI CCCGC 1 cut(s) 1011
FbaI TGATCA 1 cut(s) 297
FblI GTMKAC 3 cut(s) 1401, 1478, 1615
Fnu4HI GCNGC 6 cut(s) 138, 257, 1315, 1348, 1624, 1723
FokI GGATG 4 cut(s) 422, 701, 779, 1467
Fsp4HI GCNGC 6 cut(s) 138, 257, 1315, 1348, 1624, 1723
FspBI CTAG 4 cut(s) 134, 468, 755, 1611
GlaI GCGC 1 cut(s) 266
GluI GCNGC 6 cut(s) 138, 257, 1315, 1348, 1624, 1723
HaeIII GGCC 4 cut(s) 305, 1064, 1347, 1586
HapII CCGG 5 cut(s) 375, 1406, 1640, 1661, 1679
HhaI GCGC 1 cut(s) 267
Hin1II CATG 8 cut(s) 111, 430, 800, 1042, 1112, 1337, 1502, 1553
Hin6I GCGC 1 cut(s) 265
HinP1I GCGC 1 cut(s) 265
HincII GTYRAC 4 cut(s) 706, 1402, 1479, 1616
HindII GTYRAC 4 cut(s) 706, 1402, 1479, 1616
HindIII AAGCTT 2 cut(s) 344, 1427
HinfI GANTC 9 cut(s) 18, 188, 228, 781, 1042, 1056, 1219, 1282, 1529
HpaI GTTAAC 1 cut(s) 706
HpaII CCGG 5 cut(s) 375, 1406, 1640, 1661, 1679
HphI GGTGA 5 cut(s) 62, 170, 1006, 1139, 1372
Hpy166II GTNNAC 9 cut(s) 6, 8, 706, 804, 912, 1390, 1402, 1479, 1616
Hpy188I TCNGA 5 cut(s) 193, 297, 611, 1307, 1534
Hpy8I GTNNAC 9 cut(s) 6, 8, 706, 804, 912, 1390, 1402, 1479, 1616
HpyAV CCTTC 3 cut(s) 1075, 1510, 1537
HpyCH4III ACNGT 5 cut(s) 433, 818, 916, 1098, 1483
HpyCH4V TGCA 9 cut(s) 34, 39, 176, 215, 327, 558, 919, 986, 1253
HpyF10VI GCNNNNNNNGC 5 cut(s) 40, 143, 253, 262, 1344
HpyF3I CTNAG 6 cut(s) 450, 719, 869, 1233, 1466, 1533
Hsp92II CATG 8 cut(s) 111, 430, 800, 1042, 1112, 1337, 1502, 1553
HspAI GCGC 1 cut(s) 265
Kpn2I TCCGGA 1 cut(s) 1678
Ksp22I TGATCA 1 cut(s) 297
KspAI GTTAAC 1 cut(s) 706
Kzo9I GATC 7 cut(s) 297, 394, 453, 490, 792, 1167, 1258
LmnI GCTCC 3 cut(s) 174, 253, 850
Lsp1109I GCAGC 5 cut(s) 149, 243, 1326, 1610, 1709
LweI GCATC 5 cut(s) 21, 131, 336, 891, 951
MaeI CTAG 4 cut(s) 134, 468, 755, 1611
MaeIII GTNAC 3 cut(s) 1098, 1489, 1712
MalI GATC 7 cut(s) 299, 396, 455, 492, 794, 1169, 1260
MboI GATC 7 cut(s) 297, 394, 453, 490, 792, 1167, 1258
MboII GAAGA 7 cut(s) 489, 1180, 1183, 1187, 1258, 1337, 1369
MfeI CAATTG 2 cut(s) 210, 843
MluCI AATT 8 cut(s) 161, 210, 216, 567, 624, 843, 1143, 1226
MlyI GAGTC 3 cut(s) 237, 1065, 1523
MmeI TCCRAC 1 cut(s) 1285
Mph1103I ATGCAT 1 cut(s) 329
MroI TCCGGA 1 cut(s) 1678
MroXI GAANNNNTTC 1 cut(s) 1218
MseI TTAA 5 cut(s) 12, 288, 528, 639, 705
MslI CAYNNNNRTG 3 cut(s) 602, 1107, 1731
MspA1I CMGCKG 1 cut(s) 1361
MspCI CTTAAG 1 cut(s) 11
MspI CCGG 5 cut(s) 375, 1406, 1640, 1661, 1679
MspR9I CCNGG 5 cut(s) 48, 375, 1406, 1641, 1661
MunI CAATTG 2 cut(s) 210, 843
Mva1269I GAATGC 2 cut(s) 329, 1338
MvaI CCWGG 1 cut(s) 48
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 5 cut(s) 40, 143, 253, 262, 1344
NciI CCSGG 4 cut(s) 375, 1406, 1641, 1661
NcoI CCATGG 1 cut(s) 1333
NdeII GATC 7 cut(s) 297, 394, 453, 490, 792, 1167, 1258
NlaIII CATG 8 cut(s) 111, 430, 800, 1042, 1112, 1337, 1502, 1553
NlaIV GGNNCC 3 cut(s) 170, 688, 1659
NmuCI GTSAC 2 cut(s) 1098, 1489
NruI TCGCGA 1 cut(s) 186
NsiI ATGCAT 1 cut(s) 329
PagI TCATGA 1 cut(s) 426
PceI AGGCCT 2 cut(s) 1064, 1586
PctI GAATGC 2 cut(s) 329, 1338
PdmI GAANNNNTTC 1 cut(s) 1218
PfeI GAWTC 6 cut(s) 18, 188, 781, 1042, 1219, 1282
PflFI GACNNNGTC 2 cut(s) 1406, 1550
PfoI TCCNGGA 1 cut(s) 1659
PkrI GCNGC 6 cut(s) 139, 258, 1316, 1349, 1625, 1724
PleI GAGTC 3 cut(s) 236, 1064, 1523
PpsI GAGTC 3 cut(s) 236, 1064, 1523
PpuMI RGGWCCY 1 cut(s) 1657
Psp5II RGGWCCY 1 cut(s) 1657
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 3 cut(s) 170, 688, 1659
PspPI GGNCC 6 cut(s) 929, 1345, 1356, 1546, 1657, 1736
PspPPI RGGWCCY 1 cut(s) 1657
PsyI GACNNNGTC 2 cut(s) 1406, 1550
RruI TCGCGA 1 cut(s) 186
RsaI GTAC 4 cut(s) 7, 445, 923, 1184
RsaNI GTAC 4 cut(s) 6, 444, 922, 1183
RseI CAYNNNNRTG 3 cut(s) 602, 1107, 1731
SalI GTCGAC 3 cut(s) 1400, 1477, 1614
SaqAI TTAA 5 cut(s) 12, 288, 528, 639, 705
SatI GCNGC 6 cut(s) 138, 257, 1315, 1348, 1624, 1723
Sau3AI GATC 7 cut(s) 297, 394, 453, 490, 792, 1167, 1258
Sau96I GGNCC 6 cut(s) 929, 1345, 1356, 1546, 1657, 1736
ScaI AGTACT 1 cut(s) 923
SchI GAGTC 3 cut(s) 237, 1065, 1523
ScrFI CCNGG 5 cut(s) 48, 375, 1406, 1641, 1661
SfaNI GCATC 5 cut(s) 21, 131, 336, 891, 951
SfcI CTRYAG 2 cut(s) 933, 1362
SinI GGWCC 5 cut(s) 929, 1356, 1546, 1657, 1736
SmiMI CAYNNNNRTG 3 cut(s) 602, 1107, 1731
SmlI CTYRAG 4 cut(s) 11, 242, 281, 536
SmoI CTYRAG 4 cut(s) 11, 242, 281, 536
SpeI ACTAGT 1 cut(s) 467
Sse9I AATT 8 cut(s) 161, 210, 216, 567, 624, 843, 1143, 1226
SseBI AGGCCT 2 cut(s) 1064, 1586
SsiI CCGC 6 cut(s) 1004, 1200, 1348, 1359, 1460, 1520
SspMI CTAG 4 cut(s) 134, 468, 755, 1611
StuI AGGCCT 2 cut(s) 1064, 1586
StyD4I CCNGG 5 cut(s) 46, 373, 1404, 1639, 1659
StyI CCWWGG 1 cut(s) 1333
TaaI ACNGT 5 cut(s) 433, 818, 916, 1098, 1483
TaqI TCGA 8 cut(s) 330, 383, 711, 779, 1017, 1401, 1478, 1615
TasI AATT 8 cut(s) 161, 210, 216, 567, 624, 843, 1143, 1226
TatI WGTACW 3 cut(s) 5, 921, 1182
TauI GCSGC 1 cut(s) 1350
TfiI GAWTC 6 cut(s) 18, 188, 781, 1042, 1219, 1282
Tru1I TTAA 5 cut(s) 12, 288, 528, 639, 705
Tru9I TTAA 5 cut(s) 12, 288, 528, 639, 705
TscAI CASTG 4 cut(s) 81, 132, 411, 1249
TseFI GTSAC 2 cut(s) 1098, 1489
TseI GCWGC 5 cut(s) 137, 256, 1314, 1623, 1722
Tsp45I GTSAC 2 cut(s) 1098, 1489
TspDTI ATGAA 5 cut(s) 96, 733, 940, 1013, 1685
TspGWI ACGGA 2 cut(s) 779, 1498
TspRI CASTG 4 cut(s) 81, 132, 411, 1249
Tth111I GACNNNGTC 2 cut(s) 1406, 1550
Vha464I CTTAAG 1 cut(s) 11
VpaK11BI GGWCC 5 cut(s) 929, 1356, 1546, 1657, 1736
XagI CCTNNNNNAGG 1 cut(s) 936
XapI RAATTY 2 cut(s) 161, 1143
XcmI CCANNNNNNNNNTGG 1 cut(s) 697
XmiI GTMKAC 3 cut(s) 1401, 1478, 1615
XmnI GAANNNNTTC 1 cut(s) 1218
XspI CTAG 4 cut(s) 134, 468, 755, 1611
ZrmI AGTACT 1 cut(s) 923
Zsp2I ATGCAT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.