FvH4_2g27932

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000074
Physical Location & Seq
Reverse (-)
22058223 .. 22060778
2556 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g27932.t1

Sequence Viewer

Length: 1767 bp
ATGGTCGATACGGATGACGACTTGGACGAAAGTTGGCTTTGTTCGACTGACCACTTGTACATTACTGATGAGTCATTACATGACGATTCTGAATACGAAGCGTCAGTATGCGGGTTGGAACAGTCCCCATCTGGTTCCACCCGAGTTCCAAAGTATGAATTTGTTGGGCCAGTTAATTCCACAGGTGTGGCATCATCAGCAACGGAGATTGATTTGTCAAATGATTTAATAGATGACATTGTGTTGAATATGAAAGAACCGTCTACAGGGGATAAGTTTAATAGGTTAAATATCAGAGACATCACATATGACGATGTATCCGATCTATTGTTTGAAGACTACGAGGCCGCAGGCAAGTTTTACAACTATTACGCACACGTACGTGGGTTCAACACAAGGAAATCAAAAATGTACAGATACCGTACCAGTGACTTTGTGTATCGAAGGGAGTCGGAGTGTTCTAAAGCTGGAGTAAACCCCAAAAAGCGTCGAAATCCCGTTGAAGTTGCTGAGAAAAAGCGACCAGTGGACATTAAAGAAACCAAACGCCGAAACCACATGTTGCGTAGGGGTTACAGGCAGACTAGATGCAGGTGTACTGCCAAGTTTGTTGTAAAGTGGTGCCTAAGGCGTAAGAAGTACTTTGTATGTGAATTTGTAACGCTGCACAATCATGATTTGTGCCGTCCAAACGAAGTGCATTTCCTTCGGTCTCATCGGAAAGTAGAGGACCACGACCTTGCCCAGGTTCAATCGTTGAGTGAAGTTCAAGTTCCCATTAGCAGAGTGTATGAATTTCTTTCTTACCAGGCAGGTAGATATAATGACATGCGGTTTACGCTTAAAGATCTGTACAACAAGCTTGGTAGGAAAAATATTACAGATAATGCAGAAGGTGATGCACAAACTGCTGTGAGAAACAGTACCCCCGTGTTTGATACGCACATGAGAAAGTTGGAGGTGGAGGCTTGTAAAACATTCAGTCATGACATATTTATCATGATTAAATCTCAGATAAATTTTGGGGATAGGTTTGTTGTACATCAGAGGTTCCCATTTTCTAACGCAGACGCCATAGTGTTTTATGTGGGACAGTATGACAAAGTTGAACGGCGGTGGTCGGTTGACTATTGCGGCAACAAAGGCAACCCCCAATGGTCATGCTCGTGCAAGATGTATGAATCGGACGGCATTCCATGTGCTCACTTGTTCTGTGTTTTTAAATATGAATTGATCATAGAATTCCCAACTTGTCTAATAAACAAGCGATGGACCAGGGAAGTGGGTGAGACAACCATTGTCCCATCATGTGTACAAGTTCAGAACACCTCATTGGCAAAGAGCCCAAGGTATGCTTCCCTCCTAATTGAAGCTGGAAAGGCATGTTCACGATACGCAGAGTCTCCTGAAGGGTTCAATGCCGCAATGATTGAACTTGAGAAGTTGAAAAAATGTTCCATGAAATACAACCCTACCGTGAATGAAGATCATGCTGCTCTTTCAGAAAGCGATAGCGTTGTTGGAGATCCGTTGAAATGTAGAACAAAAGGAATGCCGTCCAAAACAGAACAAAAGCGAAGCGTGATTACATGCAGTAATTGTGAGGGGCTTGGTCACAACACGCGCAGCTGCAAAAAGCCTCGATTGGTGCCTGATGTTTGTGGTTCCGGCAACGTTGTGGGGCGGCAGACGCCTGCCTTGGACAACAGTAGAGATTGGGAACCCTGTATTCCACGTTTCTCTCCTGCGCTGCGTGATAACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

589

Amino Acids

67.54

Weight (kDa)

8.28

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 119 - 228 2.7e-10 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 582
Acc36I ACCTGC 2 cut(s) 582, 803
AccB1I GGYRCC 2 cut(s) 621, 1648
AccI GTMKAC 1 cut(s) 263
AccII CGCG 1 cut(s) 1624
AciI CCGC 7 cut(s) 111, 348, 832, 1114, 1134, 1422, 1684
AclI AACGTT 1 cut(s) 1674
AclWI GGATC 1 cut(s) 1520
AcsI RAATTY 5 cut(s) 158, 653, 794, 1018, 1241
AcuI CTGAAG 1 cut(s) 1428
AcyI GRCGYC 2 cut(s) 1071, 1691
AfiI CCNNNNNNNGG 2 cut(s) 266, 745
AflIII ACRYGT 2 cut(s) 376, 558
AjnI CCWGG 3 cut(s) 744, 807, 1274
AjuI GAANNNNNNNTTGG 4 cut(s) 1316, 1339, 1348, 1371
AleI CACNNNNGTG 2 cut(s) 185, 381
AluBI AGCT 4 cut(s) 467, 862, 1373, 1629
AluI AGCT 4 cut(s) 467, 862, 1373, 1629
Alw21I GWGCWC 1 cut(s) 1204
Alw26I GTCTC 4 cut(s) 291, 717, 1283, 1407
AlwI GGATC 1 cut(s) 1520
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 2 cut(s) 167, 345
ApeKI GCWGC 5 cut(s) 664, 1493, 1626, 1629, 1750
ApoI RAATTY 5 cut(s) 158, 653, 794, 1018, 1241
AspLEI GCGC 2 cut(s) 1626, 1750
AspS9I GGNCC 3 cut(s) 167, 730, 1272
AsuHPI GGTGA 2 cut(s) 908, 1298
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 2 cut(s) 730, 1272
AxyI CCTNAGG 1 cut(s) 626
BanI GGYRCC 2 cut(s) 621, 1648
BanII GRGCYC 1 cut(s) 1346
BarI GAAGNNNNNNTAC 2 cut(s) 1570, 1602
BauI CACGAG 1 cut(s) 1165
BbsI GAAGAC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 1204
BbvI GCAGC 5 cut(s) 651, 1480, 1616, 1638, 1737
BccI CCATC 3 cut(s) 136, 1263, 1312
BceAI ACGGC 4 cut(s) 669, 1127, 1204, 1540
BcgI CGANNNNNNTGC 2 cut(s) 689, 723
BciT130I CCWGG 3 cut(s) 746, 809, 1276
BciVI GTATCC 1 cut(s) 328
BclI TGATCA 1 cut(s) 1233
BcoDI GTCTC 4 cut(s) 291, 717, 1283, 1407
BfaI CTAG 1 cut(s) 585
BfmI CTRYAG 1 cut(s) 264
BfuAI ACCTGC 2 cut(s) 582, 803
BfuI GTATCC 1 cut(s) 328
BglII AGATCT 1 cut(s) 847
BisI GCNGC 9 cut(s) 348, 665, 1135, 1422, 1494, 1627, 1630, 1685, 1751
BlsI GCNGC 9 cut(s) 349, 666, 1136, 1423, 1495, 1628, 1631, 1686, 1752
BmcAI AGTACT 1 cut(s) 641
Bme1390I CCNGG 3 cut(s) 746, 809, 1276
Bme18I GGWCC 2 cut(s) 730, 1272
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 3 cut(s) 167, 730, 1272
BmiI GGNNCC 6 cut(s) 136, 623, 1052, 1650, 1666, 1722
BmrFI CCNGG 3 cut(s) 746, 809, 1276
BmsI GCATC 3 cut(s) 200, 578, 889
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 1457
BsaAI YACGTR 2 cut(s) 379, 383
BsaHI GRCGYC 2 cut(s) 1071, 1691
BsaI GGTCTC 1 cut(s) 717
BsaJI CCNNGG 4 cut(s) 744, 1275, 1346, 1698
BsaXI ACNNNNNCTCC 2 cut(s) 440, 470
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 745
Bse1I ACTGG 3 cut(s) 170, 426, 524
Bse21I CCTNAGG 1 cut(s) 626
Bse3DI GCAATG 1 cut(s) 1431
BseBI CCWGG 3 cut(s) 746, 809, 1276
BseDI CCNNGG 4 cut(s) 744, 1275, 1346, 1698
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 266, 745
BseMI GCAATG 1 cut(s) 1431
BseMII CTCAG 2 cut(s) 501, 1025
BseNI ACTGG 3 cut(s) 170, 426, 524
BseXI GCAGC 5 cut(s) 651, 1480, 1616, 1638, 1737
BsgI GTGCAG 1 cut(s) 650
Bsh1236I CGCG 1 cut(s) 1624
BshFI GGCC 2 cut(s) 169, 347
BshNI GGYRCC 2 cut(s) 621, 1648
BsiHKAI GWGCWC 1 cut(s) 1204
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 1668
BsiWI CGTACG 1 cut(s) 379
BslFI GGGAC 3 cut(s) 109, 1104, 1286
BslI CCNNNNNNNGG 2 cut(s) 266, 745
BsmAI GTCTC 4 cut(s) 291, 717, 1283, 1407
BsmFI GGGAC 3 cut(s) 109, 1104, 1286
BsmI GAATGC 2 cut(s) 1191, 1557
BsnI GGCC 2 cut(s) 169, 347
Bso31I GGTCTC 1 cut(s) 717
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 2 cut(s) 1204, 1346
Bsp1407I TGTACA 5 cut(s) 57, 411, 852, 1039, 1312
Bsp143I GATC 5 cut(s) 322, 847, 1233, 1486, 1525
BspACI CCGC 7 cut(s) 111, 348, 832, 1114, 1134, 1422, 1684
BspANI GGCC 2 cut(s) 169, 347
BspCNI CTCAG 2 cut(s) 502, 1024
BspFNI CGCG 1 cut(s) 1624
BspHI TCATGA 3 cut(s) 673, 985, 999
BspLI GGNNCC 6 cut(s) 136, 623, 1052, 1650, 1666, 1722
BspMI ACCTGC 2 cut(s) 582, 803
BspPI GGATC 1 cut(s) 1520
BspT107I GGYRCC 2 cut(s) 621, 1648
BspTNI GGTCTC 1 cut(s) 717
BsrDI GCAATG 1 cut(s) 1431
BsrGI TGTACA 5 cut(s) 57, 411, 852, 1039, 1312
BsrI ACTGG 3 cut(s) 170, 426, 524
BssECI CCNNGG 4 cut(s) 744, 1275, 1346, 1698
BssMI GATC 5 cut(s) 322, 847, 1233, 1486, 1525
BssNI GRCGYC 2 cut(s) 1071, 1691
BssSI CACGAG 1 cut(s) 1165
BssT1I CCWWGG 2 cut(s) 1346, 1698
Bst2BI CACGAG 1 cut(s) 1165
Bst2UI CCWGG 3 cut(s) 746, 809, 1276
Bst4CI ACNGT 7 cut(s) 123, 261, 422, 923, 1095, 1477, 1709
BstACI GRCGYC 2 cut(s) 1071, 1691
BstAPI GCANNNNNTGC 1 cut(s) 908
BstAUI TGTACA 5 cut(s) 57, 411, 852, 1039, 1312
BstBAI YACGTR 2 cut(s) 379, 383
BstC8I GCNNGC 2 cut(s) 352, 1695
BstDEI CTNAG 3 cut(s) 510, 626, 1011
BstENI CCTNNNNNAGG 1 cut(s) 743
BstF5I GGATG 1 cut(s) 19
BstFNI CGCG 1 cut(s) 1624
BstHHI GCGC 2 cut(s) 1626, 1750
BstKTI GATC 5 cut(s) 325, 850, 1236, 1489, 1528
BstMAI GTCTC 4 cut(s) 291, 717, 1283, 1407
BstMBI GATC 5 cut(s) 322, 847, 1233, 1486, 1525
BstMWI GCNNNNNNNGC 6 cut(s) 197, 838, 908, 1143, 1379, 1690
BstNI CCWGG 3 cut(s) 746, 809, 1276
BstNSI RCATGY 4 cut(s) 562, 832, 1386, 1593
BstSCI CCNGG 3 cut(s) 744, 807, 1274
BstSFI CTRYAG 1 cut(s) 264
BstUI CGCG 1 cut(s) 1624
BstV1I GCAGC 5 cut(s) 651, 1480, 1616, 1638, 1737
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 847, 1525
BstXI CCANNNNNNTGG 2 cut(s) 187, 1282
BstYI RGATCY 2 cut(s) 847, 1525
Bsu36I CCTNAGG 1 cut(s) 626
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 2 cut(s) 169, 347
BtgZI GCGATG 1 cut(s) 1282
BtsCI GGATG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 433, 531
BveI ACCTGC 2 cut(s) 582, 803
Cac8I GCNNGC 2 cut(s) 352, 1695
CciI TCATGA 3 cut(s) 673, 985, 999
CfoI GCGC 2 cut(s) 1626, 1750
Cfr13I GGNCC 3 cut(s) 167, 730, 1272
CseI GACGC 4 cut(s) 90, 476, 1079, 1699
DdeI CTNAG 3 cut(s) 510, 626, 1011
DpnI GATC 5 cut(s) 324, 849, 1235, 1488, 1527
DpnII GATC 5 cut(s) 322, 847, 1233, 1486, 1525
DraI TTTAAA 1 cut(s) 1222
Eco130I CCWWGG 2 cut(s) 1346, 1698
Eco24I GRGCYC 1 cut(s) 1346
Eco31I GGTCTC 1 cut(s) 717
Eco47I GGWCC 2 cut(s) 730, 1272
Eco57I CTGAAG 1 cut(s) 1428
Eco81I CCTNAGG 1 cut(s) 626
Eco88I CYCGRG 1 cut(s) 141
EcoNI CCTNNNNNAGG 1 cut(s) 743
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 3 cut(s) 744, 807, 1274
EcoT14I CCWWGG 2 cut(s) 1346, 1698
EcoT38I GRGCYC 1 cut(s) 1346
ErhI CCWWGG 2 cut(s) 1346, 1698
FalI AAGNNNNNCTT 4 cut(s) 626, 658, 1339, 1371
FaqI GGGAC 3 cut(s) 109, 1104, 1286
FauI CCCGC 1 cut(s) 104
FauNDI CATATG 1 cut(s) 307
FbaI TGATCA 1 cut(s) 1233
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 9 cut(s) 348, 665, 1135, 1422, 1494, 1627, 1630, 1685, 1751
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 1346
Fsp4HI GCNGC 9 cut(s) 348, 665, 1135, 1422, 1494, 1627, 1630, 1685, 1751
FspBI CTAG 1 cut(s) 585
GlaI GCGC 2 cut(s) 1625, 1749
GluI GCNGC 9 cut(s) 348, 665, 1135, 1422, 1494, 1627, 1630, 1685, 1751
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 2 cut(s) 169, 347
HapII CCGG 1 cut(s) 1668
HgaI GACGC 4 cut(s) 90, 476, 1079, 1699
HhaI GCGC 2 cut(s) 1626, 1750
Hin1I GRCGYC 2 cut(s) 1071, 1691
Hin6I GCGC 2 cut(s) 1624, 1748
HinP1I GCGC 2 cut(s) 1624, 1748
HincII GTYRAC 1 cut(s) 1126
HindII GTYRAC 1 cut(s) 1126
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 5 cut(s) 71, 86, 449, 1181, 1400
HpaII CCGG 1 cut(s) 1668
HphI GGTGA 2 cut(s) 908, 1298
Hpy166II GTNNAC 8 cut(s) 264, 475, 529, 597, 837, 1126, 1313, 1388
Hpy188III TCNNGA 5 cut(s) 674, 986, 1000, 1389, 1406
Hpy8I GTNNAC 8 cut(s) 264, 475, 529, 597, 837, 1126, 1313, 1388
Hpy99I CGWCG 1 cut(s) 492
HpyAV CCTTC 4 cut(s) 438, 716, 887, 1403
HpyCH4III ACNGT 7 cut(s) 123, 261, 422, 923, 1095, 1477, 1709
HpyCH4IV ACGT 4 cut(s) 378, 382, 1674, 1735
HpyCH4V TGCA 8 cut(s) 591, 667, 700, 890, 902, 1170, 1593, 1632
HpyF10VI GCNNNNNNNGC 6 cut(s) 197, 838, 908, 1143, 1379, 1690
HpyF3I CTNAG 3 cut(s) 510, 626, 1011
HpySE526I ACGT 4 cut(s) 378, 382, 1674, 1735
Hsp92I GRCGYC 2 cut(s) 1071, 1691
HspAI GCGC 2 cut(s) 1624, 1748
Ksp22I TGATCA 1 cut(s) 1233
Kzo9I GATC 5 cut(s) 322, 847, 1233, 1486, 1525
Lsp1109I GCAGC 5 cut(s) 651, 1480, 1616, 1638, 1737
LweI GCATC 3 cut(s) 200, 578, 889
MaeI CTAG 1 cut(s) 585
MaeII ACGT 4 cut(s) 378, 382, 1674, 1735
MaeIII GTNAC 4 cut(s) 428, 572, 658, 1613
MalI GATC 5 cut(s) 324, 849, 1235, 1488, 1527
MboI GATC 5 cut(s) 322, 847, 1233, 1486, 1525
MboII GAAGA 2 cut(s) 347, 1496
MflI RGATCY 2 cut(s) 847, 1525
MhlI GDGCHC 2 cut(s) 1204, 1346
MluCI AATT 9 cut(s) 158, 175, 653, 794, 1018, 1229, 1241, 1365, 1597
MlyI GAGTC 3 cut(s) 80, 458, 1409
MmeI TCCRAC 4 cut(s) 96, 432, 936, 1501
MnlI CCTC 9 cut(s) 337, 721, 952, 958, 1041, 1339, 1370, 1597, 1650
MseI TTAA 8 cut(s) 174, 227, 279, 287, 534, 843, 1005, 1221
MslI CAYNNNNRTG 4 cut(s) 185, 381, 672, 1165
MspA1I CMGCKG 1 cut(s) 1629
MspI CCGG 1 cut(s) 1668
MspR9I CCNGG 3 cut(s) 746, 809, 1276
Mva1269I GAATGC 2 cut(s) 1191, 1557
MvaI CCWGG 3 cut(s) 746, 809, 1276
MvnI CGCG 1 cut(s) 1624
MwoI GCNNNNNNNGC 6 cut(s) 197, 838, 908, 1143, 1379, 1690
NdeI CATATG 1 cut(s) 307
NdeII GATC 5 cut(s) 322, 847, 1233, 1486, 1525
NlaIV GGNNCC 6 cut(s) 136, 623, 1052, 1650, 1666, 1722
NmuCI GTSAC 2 cut(s) 428, 1613
NspI RCATGY 4 cut(s) 562, 832, 1386, 1593
OliI CACNNNNGTG 2 cut(s) 185, 381
PagI TCATGA 3 cut(s) 673, 985, 999
PaqCI CACCTGC 1 cut(s) 582
PciI ACATGT 1 cut(s) 558
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 318
PctI GAATGC 2 cut(s) 1191, 1557
PfeI GAWTC 2 cut(s) 86, 1181
Pfl23II CGTACG 1 cut(s) 379
PkrI GCNGC 9 cut(s) 349, 666, 1136, 1423, 1495, 1628, 1631, 1686, 1752
PleI GAGTC 3 cut(s) 79, 457, 1408
PpsI GAGTC 3 cut(s) 79, 457, 1408
Ppu21I YACGTR 2 cut(s) 379, 383
PscI ACATGT 1 cut(s) 558
Psp1406I AACGTT 1 cut(s) 1674
Psp6I CCWGG 3 cut(s) 744, 807, 1274
PspGI CCWGG 3 cut(s) 744, 807, 1274
PspLI CGTACG 1 cut(s) 379
PspN4I GGNNCC 6 cut(s) 136, 623, 1052, 1650, 1666, 1722
PspPI GGNCC 3 cut(s) 167, 730, 1272
PsuI RGATCY 2 cut(s) 847, 1525
PvuII CAGCTG 1 cut(s) 1629
RseI CAYNNNNRTG 4 cut(s) 185, 381, 672, 1165
SaqAI TTAA 8 cut(s) 174, 227, 279, 287, 534, 843, 1005, 1221
SatI GCNGC 9 cut(s) 348, 665, 1135, 1422, 1494, 1627, 1630, 1685, 1751
Sau3AI GATC 5 cut(s) 322, 847, 1233, 1486, 1525
Sau96I GGNCC 3 cut(s) 167, 730, 1272
ScaI AGTACT 1 cut(s) 641
SchI GAGTC 3 cut(s) 80, 458, 1409
ScrFI CCNGG 3 cut(s) 746, 809, 1276
SduI GDGCHC 2 cut(s) 1204, 1346
SfaNI GCATC 3 cut(s) 200, 578, 889
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 2 cut(s) 730, 1272
SmiMI CAYNNNNRTG 4 cut(s) 185, 381, 672, 1165
SmlI CTYRAG 1 cut(s) 1436
SmoI CTYRAG 1 cut(s) 1436
Sse9I AATT 9 cut(s) 158, 175, 653, 794, 1018, 1229, 1241, 1365, 1597
SsiI CCGC 7 cut(s) 111, 348, 832, 1114, 1134, 1422, 1684
SspI AATATT 1 cut(s) 877
SspMI CTAG 1 cut(s) 585
StyD4I CCNGG 3 cut(s) 744, 807, 1274
StyI CCWWGG 2 cut(s) 1346, 1698
TaaI ACNGT 7 cut(s) 123, 261, 422, 923, 1095, 1477, 1709
TaiI ACGT 4 cut(s) 381, 385, 1677, 1738
TaqI TCGA 5 cut(s) 6, 44, 442, 490, 1642
TaqII GACCGA 1 cut(s) 699
TasI AATT 9 cut(s) 158, 175, 653, 794, 1018, 1229, 1241, 1365, 1597
TatI WGTACW 7 cut(s) 57, 411, 596, 639, 852, 1039, 1312
TauI GCSGC 4 cut(s) 350, 1137, 1424, 1687
TfiI GAWTC 2 cut(s) 86, 1181
Tru1I TTAA 8 cut(s) 174, 227, 279, 287, 534, 843, 1005, 1221
Tru9I TTAA 8 cut(s) 174, 227, 279, 287, 534, 843, 1005, 1221
TscAI CASTG 2 cut(s) 433, 531
TseFI GTSAC 2 cut(s) 428, 1613
TseI GCWGC 5 cut(s) 664, 1493, 1626, 1629, 1750
Tsp45I GTSAC 2 cut(s) 428, 1613
TspDTI ATGAA 7 cut(s) 171, 266, 807, 1194, 1242, 1475, 1497
TspGWI ACGGA 3 cut(s) 26, 218, 1518
TspRI CASTG 2 cut(s) 433, 531
VpaK11BI GGWCC 2 cut(s) 730, 1272
XagI CCTNNNNNAGG 1 cut(s) 743
XapI RAATTY 5 cut(s) 158, 653, 794, 1018, 1241
XceI RCATGY 4 cut(s) 562, 832, 1386, 1593
XmiI GTMKAC 1 cut(s) 263
XspI CTAG 1 cut(s) 585
ZrmI AGTACT 1 cut(s) 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.