Rmu_sc0000931.1_g000006

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000931.1
OG0000074
Physical Location & Seq
Forward (+)
30677 .. 33010
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000931.1_g000006.1.cds

Sequence Viewer

Length: 1620 bp
atggagatgaatggatgtaatcagttcaaggaagtagttccggatttaggggtagaatttggaaatgtggaattgaatgggagaaatttcaaagacatcacatatgaggacgttaaacatctatggtttcgaaccatagatgaagcagagaagttctacaagtattactcccatatggccggcttcagcacaaggaaagttaaaaaagacatacacaaaaccaagaaaacagtatatcgaaggcagtgggtatgttctatagcaggccgacatgtgtcggtacagaagaccaaagaggttggcggttgtggaatgaaggaagcccccaatggtgataagaataaggtgtctaggaagagattgcttcgtggaacgaggatatctcgaactgattgtcccgcccagttcatggttatgtggtctaatcaccaagatttgttctatgtttctaagtttgtgacgcagcacaatcacgatcttgctatcgcccctgaagttcatttccttcgctcccaccgtaatgttaagagacacgacattgcacaggttgagtccctcctgcaagcacaggtctctattagtcgagcttatgaatttcttgcccaacagtccggtggatatcacaacatgcgattcactgagaaggatctttacaacaagcttcatccaaagaatatgaaatatgatgcggagggtgatgcagaaatggctgtaagaaggatgaaagcaaagggatcgaccgagaaagaattctggtttgagtacacaattgataaagacaggaggcttgcaaacatattttggcgggaccatcaatcacttttggactacattgcgtatggggatgtgttgattgtagacagtacttacaagaccaacaagtatagtaagcctatggtgttgttcgtcgggtgcaacaatcaccgggccaccgttgtgtttggtattgcacttgcatgtgatgagaaagaggaaacttacgattgggtatttaatcagttcattgattcaatgcaacaaaaaaggcccttatcagtcattacagacggggacgaagctatgaagaatgctcttgagcgcgtcatgcctcaaacccgtcacagactctgtgcctggcacattggtagaaacattggccagaacctaaactctgaagaagttatggaaggtattggccaattgatgtttgcgtcgctaaccgtacccgattgggagtttagatggcagtctcttattttgaataatgggcttgaaaacaatgcgtgggtggcttctctttataataagagggatcgctgggcggaggcttattttagagaccactttttcggagaagcctgtttaaatttctccaaatccccagaaagcttcaacgatgcaatgatccaacttcagaccttcaaagctaaatccatggagtacaaggaagttgtggaagttgcggataccaaccttcctccccctacagacagtcccactgttgtgagggacccgttgatgtcaagaacgaagggaatgtcgagcaacagacaagggcacgccgacagtcaagcgatggacattctccactatcgaaactccatcgatggttcatcacgaatgggaaccatcaattcctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

539

Amino Acids

62.57

Weight (kDa)

8.75

Isoelectric Point (pI)

45.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1281
AccB7I CCANNNNNTGG 1 cut(s) 409
AccI GTMKAC 1 cut(s) 858
AccII CGCG 1 cut(s) 1080
AccIII TCCGGA 1 cut(s) 40
AciI CCGC 6 cut(s) 303, 399, 689, 805, 1301, 1442
AclWI GGATC 4 cut(s) 654, 742, 1299, 1378
AcoI YGGCCR 3 cut(s) 177, 1135, 1174
AcsI RAATTY 5 cut(s) 56, 85, 593, 749, 1345
AcuI CTGAAG 4 cut(s) 169, 513, 1173, 1376
AfaI GTAC 5 cut(s) 282, 764, 865, 1203, 1421
AfiI CCNNNNNNNGG 2 cut(s) 47, 409
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 8 cut(s) 28, 76, 91, 1011, 1240, 1253, 1372, 1402
AjnI CCWGG 1 cut(s) 1112
AleI CACNNNNGTG 2 cut(s) 935, 1481
AloI GAACNNNNNNTCC 2 cut(s) 379, 411
AluBI AGCT 5 cut(s) 587, 661, 1058, 1368, 1406
AluI AGCT 5 cut(s) 587, 661, 1058, 1368, 1406
Alw26I GTCTC 4 cut(s) 523, 577, 1233, 1311
AlwI GGATC 4 cut(s) 654, 742, 1299, 1378
AlwNI CAGNNNCTG 1 cut(s) 1107
Aor13HI TCCGGA 1 cut(s) 40
AoxI GGCC 6 cut(s) 177, 265, 927, 1025, 1135, 1174
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 5 cut(s) 56, 85, 593, 749, 1345
ArsI GACNNNNNNTTYG 6 cut(s) 379, 411, 1310, 1342, 1502, 1534
Asp700I GAANNNNTTC 2 cut(s) 36, 749
AspLEI GCGC 1 cut(s) 1080
AspS9I GGNCC 4 cut(s) 808, 927, 1026, 1489
AsuC2I CCSGG 1 cut(s) 926
AsuHPI GGTGA 4 cut(s) 344, 419, 707, 914
AsuII TTCGAA 1 cut(s) 130
AvaII GGWCC 2 cut(s) 808, 1489
BaeGI GKGCMC 1 cut(s) 1539
BalI TGGCCA 2 cut(s) 1137, 1176
BarI GAAGNNNNNNTAC 2 cut(s) 635, 667
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 1 cut(s) 475
BccI CCATC 6 cut(s) 819, 1215, 1549, 1580, 1589, 1616
BcgI CGANNNNNNTGC 2 cut(s) 717, 751
BciT130I CCWGG 1 cut(s) 1114
BciVI GTATCC 1 cut(s) 1438
BcnI CCSGG 1 cut(s) 926
BcoDI GTCTC 4 cut(s) 523, 577, 1233, 1311
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 2 cut(s) 258, 1464
BfuI GTATCC 1 cut(s) 1438
BisI GCNGC 1 cut(s) 464
BlsI GCNGC 1 cut(s) 465
BmcAI AGTACT 1 cut(s) 865
Bme1390I CCNGG 2 cut(s) 926, 1114
Bme18I GGWCC 2 cut(s) 808, 1489
BmgT120I GGNCC 4 cut(s) 808, 927, 1026, 1489
BmiI GGNNCC 4 cut(s) 809, 1490, 1491, 1606
BmrFI CCNGG 2 cut(s) 926, 1114
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 3 cut(s) 676, 688, 1366
BmuI ACTGGG 1 cut(s) 397
BoxI GACNNNNGTC 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 293
BplI GAGNNNNNCTC 2 cut(s) 367, 399
Bpu14I TTCGAA 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 1094
BpuMI CCSGG 1 cut(s) 926
Bsa29I ATCGAT 1 cut(s) 1584
BsaI GGTCTC 2 cut(s) 577, 1311
BsaJI CCNNGG 1 cut(s) 1413
BsaWI WCCGGW 2 cut(s) 40, 611
Bsc4I CCNNNNNNNGG 2 cut(s) 47, 409
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 3 cut(s) 537, 831, 1386
BseAI TCCGGA 1 cut(s) 40
BseBI CCWGG 1 cut(s) 1114
BseCI ATCGAT 1 cut(s) 1584
BseDI CCNNGG 1 cut(s) 1413
BseGI GGATG 4 cut(s) 20, 664, 726, 850
BseLI CCNNNNNNNGG 2 cut(s) 47, 409
BseMI GCAATG 3 cut(s) 537, 831, 1386
BseMII CTCAG 1 cut(s) 630
BseNI ACTGG 1 cut(s) 403
BseSI GKGCMC 1 cut(s) 1539
BseXI GCAGC 1 cut(s) 475
BseYI CCCAGC 1 cut(s) 1296
Bsh1236I CGCG 1 cut(s) 1080
Bsh1285I CGRYCG 1 cut(s) 741
BshFI GGCC 6 cut(s) 179, 267, 929, 1027, 1137, 1176
BshVI ATCGAT 1 cut(s) 1584
BsiEI CGRYCG 1 cut(s) 741
BsiSI CCGG 4 cut(s) 41, 180, 612, 925
BslFI GGGAC 6 cut(s) 381, 538, 821, 1064, 1458, 1502
BslI CCNNNNNNNGG 2 cut(s) 47, 409
BsmAI GTCTC 4 cut(s) 523, 577, 1233, 1311
BsmFI GGGAC 6 cut(s) 381, 538, 821, 1064, 1458, 1502
BsmI GAATGC 1 cut(s) 1072
BsnI GGCC 6 cut(s) 179, 267, 929, 1027, 1137, 1176
Bso31I GGTCTC 2 cut(s) 577, 1311
Bsp119I TTCGAA 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 1539
Bsp13I TCCGGA 1 cut(s) 40
Bsp143I GATC 5 cut(s) 475, 646, 734, 1291, 1383
Bsp19I CCATGG 1 cut(s) 1413
BspACI CCGC 6 cut(s) 303, 399, 689, 805, 1301, 1442
BspANI GGCC 6 cut(s) 179, 267, 929, 1027, 1137, 1176
BspCNI CTCAG 1 cut(s) 631
BspDI ATCGAT 1 cut(s) 1584
BspEI TCCGGA 1 cut(s) 40
BspFNI CGCG 1 cut(s) 1080
BspLI GGNNCC 4 cut(s) 809, 1490, 1491, 1606
BspPI GGATC 4 cut(s) 654, 742, 1299, 1378
BspT104I TTCGAA 1 cut(s) 130
BspTNI GGTCTC 2 cut(s) 577, 1311
BsrDI GCAATG 3 cut(s) 537, 831, 1386
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 403
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 1 cut(s) 1413
BssMI GATC 5 cut(s) 475, 646, 734, 1291, 1383
BssT1I CCWWGG 1 cut(s) 1413
Bst2UI CCWGG 1 cut(s) 1114
Bst4CI ACNGT 9 cut(s) 232, 518, 609, 863, 934, 1201, 1472, 1480, 1547
Bst6I CTCTTC 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 130
BstC8I GCNNGC 5 cut(s) 181, 265, 564, 789, 1539
BstDEI CTNAG 2 cut(s) 450, 639
BstDSI CCRYGG 1 cut(s) 1413
BstF5I GGATG 4 cut(s) 20, 664, 726, 850
BstFNI CGCG 1 cut(s) 1080
BstHHI GCGC 1 cut(s) 1080
BstKTI GATC 5 cut(s) 478, 649, 737, 1294, 1386
BstMAI GTCTC 4 cut(s) 523, 577, 1233, 1311
BstMBI GATC 5 cut(s) 475, 646, 734, 1291, 1383
BstMCI CGRYCG 1 cut(s) 741
BstMWI GCNNNNNNNGC 3 cut(s) 707, 1084, 1268
BstNI CCWGG 1 cut(s) 1114
BstNSI RCATGY 3 cut(s) 275, 631, 960
BstPAI GACNNNNGTC 1 cut(s) 274
BstSCI CCNGG 2 cut(s) 924, 1112
BstSFI CTRYAG 2 cut(s) 258, 1464
BstSLI GKGCMC 1 cut(s) 1539
BstUI CGCG 1 cut(s) 1080
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
Bsu15I ATCGAT 1 cut(s) 1584
BsuI GTATCC 1 cut(s) 1438
BsuRI GGCC 6 cut(s) 179, 267, 929, 1027, 1137, 1176
BsuTUI ATCGAT 1 cut(s) 1584
BtgI CCRYGG 1 cut(s) 1413
BtgZI GCGATG 1 cut(s) 1568
BtsCI GGATG 4 cut(s) 20, 664, 726, 850
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 3 cut(s) 251, 636, 1476
Cac8I GCNNGC 5 cut(s) 181, 265, 564, 789, 1539
CaiI CAGNNNCTG 1 cut(s) 1107
CfoI GCGC 1 cut(s) 1080
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 4 cut(s) 808, 927, 1026, 1489
ClaI ATCGAT 1 cut(s) 1584
CseI GACGC 3 cut(s) 469, 1069, 1179
Csp6I GTAC 5 cut(s) 281, 763, 864, 1202, 1420
CviAII CATG 6 cut(s) 272, 409, 628, 957, 1084, 1414
CviQI GTAC 5 cut(s) 281, 763, 864, 1202, 1420
DdeI CTNAG 2 cut(s) 450, 639
DpnI GATC 5 cut(s) 477, 648, 736, 1293, 1385
DpnII GATC 5 cut(s) 475, 646, 734, 1291, 1383
DraI TTTAAA 1 cut(s) 1344
EaeI YGGCCR 3 cut(s) 177, 1135, 1174
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
EciI GGCGGA 1 cut(s) 1316
Eco130I CCWWGG 1 cut(s) 1413
Eco31I GGTCTC 2 cut(s) 577, 1311
Eco32I GATATC 2 cut(s) 381, 620
Eco47I GGWCC 2 cut(s) 808, 1489
Eco57I CTGAAG 4 cut(s) 169, 513, 1173, 1376
EcoO109I RGGNCCY 2 cut(s) 1026, 1489
EcoRI GAATTC 1 cut(s) 749
EcoRII CCWGG 1 cut(s) 1112
EcoRV GATATC 2 cut(s) 381, 620
EcoT14I CCWWGG 1 cut(s) 1413
ErhI CCWWGG 1 cut(s) 1413
FaeI CATG 6 cut(s) 275, 412, 631, 960, 1087, 1417
FaqI GGGAC 6 cut(s) 381, 538, 821, 1064, 1458, 1502
FatI CATG 6 cut(s) 271, 408, 627, 956, 1083, 1413
FauI CCCGC 2 cut(s) 406, 798
FauNDI CATATG 2 cut(s) 103, 174
FblI GTMKAC 1 cut(s) 858
Fnu4HI GCNGC 1 cut(s) 464
FokI GGATG 4 cut(s) 27, 651, 733, 857
Fsp4HI GCNGC 1 cut(s) 464
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 1079
GluI GCNGC 1 cut(s) 464
GsaI CCCAGC 1 cut(s) 1300
HaeIII GGCC 6 cut(s) 179, 267, 929, 1027, 1137, 1176
HapII CCGG 4 cut(s) 41, 180, 612, 925
HgaI GACGC 3 cut(s) 469, 1069, 1179
HhaI GCGC 1 cut(s) 1080
Hin1II CATG 6 cut(s) 275, 412, 631, 960, 1087, 1417
Hin6I GCGC 1 cut(s) 1078
HinP1I GCGC 1 cut(s) 1078
HindIII AAGCTT 2 cut(s) 659, 1366
HinfI GANTC 4 cut(s) 551, 633, 1007, 1104
HpaII CCGG 4 cut(s) 41, 180, 612, 925
HphI GGTGA 4 cut(s) 344, 419, 707, 914
Hpy166II GTNNAC 2 cut(s) 765, 859
Hpy188I TCNGA 3 cut(s) 1153, 1331, 1395
Hpy188III TCNNGA 7 cut(s) 41, 384, 473, 1073, 1503, 1596, 1617
Hpy8I GTNNAC 2 cut(s) 765, 859
Hpy99I CGWCG 2 cut(s) 911, 1195
HpyAV CCTTC 9 cut(s) 234, 310, 515, 637, 711, 1160, 1408, 1463, 1504
HpyCH4III ACNGT 9 cut(s) 232, 518, 609, 863, 934, 1201, 1472, 1480, 1547
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 9 cut(s) 542, 562, 701, 791, 915, 950, 956, 1015, 1379
HpyF10VI GCNNNNNNNGC 3 cut(s) 707, 1084, 1268
HpyF3I CTNAG 2 cut(s) 450, 639
HpySE526I ACGT 1 cut(s) 111
Hsp92II CATG 6 cut(s) 275, 412, 631, 960, 1087, 1417
HspAI GCGC 1 cut(s) 1078
KflI GGGWCCC 1 cut(s) 1489
Kpn2I TCCGGA 1 cut(s) 40
KroI GCCGGC 1 cut(s) 179
KroNI GCCGGC 1 cut(s) 181
Kzo9I GATC 5 cut(s) 475, 646, 734, 1291, 1383
LmnI GCTCC 1 cut(s) 515
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 3 cut(s) 676, 688, 1366
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 2 cut(s) 457, 1097
MalI GATC 5 cut(s) 477, 648, 736, 1293, 1385
MboI GATC 5 cut(s) 475, 646, 734, 1291, 1383
MboII GAAGA 4 cut(s) 298, 367, 1075, 1166
MfeI CAATTG 2 cut(s) 768, 1178
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 1539
MlsI TGGCCA 2 cut(s) 1137, 1176
MluCI AATT 9 cut(s) 56, 71, 85, 593, 749, 768, 1178, 1345, 1612
MluNI TGGCCA 2 cut(s) 1137, 1176
MlyI GAGTC 2 cut(s) 560, 1098
MmeI TCCRAC 1 cut(s) 1411
Mox20I TGGCCA 2 cut(s) 1137, 1176
MroI TCCGGA 1 cut(s) 40
MroNI GCCGGC 1 cut(s) 179
MroXI GAANNNNTTC 2 cut(s) 36, 749
MscI TGGCCA 2 cut(s) 1137, 1176
MseI TTAA 5 cut(s) 114, 201, 525, 993, 1343
MslI CAYNNNNRTG 5 cut(s) 413, 519, 935, 955, 1481
Msp20I TGGCCA 2 cut(s) 1137, 1176
MspI CCGG 4 cut(s) 41, 180, 612, 925
MspR9I CCNGG 2 cut(s) 926, 1114
MunI CAATTG 2 cut(s) 768, 1178
Mva1269I GAATGC 1 cut(s) 1072
MvaI CCWGG 1 cut(s) 1114
MvnI CGCG 1 cut(s) 1080
MwoI GCNNNNNNNGC 3 cut(s) 707, 1084, 1268
NaeI GCCGGC 1 cut(s) 181
NciI CCSGG 1 cut(s) 926
NcoI CCATGG 1 cut(s) 1413
NdeI CATATG 2 cut(s) 103, 174
NdeII GATC 5 cut(s) 475, 646, 734, 1291, 1383
NgoMIV GCCGGC 1 cut(s) 179
NlaIII CATG 6 cut(s) 275, 412, 631, 960, 1087, 1417
NlaIV GGNNCC 4 cut(s) 809, 1490, 1491, 1606
NmuCI GTSAC 2 cut(s) 457, 1097
NspI RCATGY 3 cut(s) 275, 631, 960
NspV TTCGAA 1 cut(s) 130
OliI CACNNNNGTG 2 cut(s) 935, 1481
PciI ACATGT 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 514
PctI GAATGC 1 cut(s) 1072
PdiI GCCGGC 1 cut(s) 181
PdmI GAANNNNTTC 2 cut(s) 36, 749
PfeI GAWTC 2 cut(s) 633, 1007
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 1 cut(s) 465
PleI GAGTC 2 cut(s) 559, 1098
PpsI GAGTC 2 cut(s) 559, 1098
PpuMI RGGWCCY 1 cut(s) 1489
PscI ACATGT 1 cut(s) 271
PshAI GACNNNNGTC 1 cut(s) 274
PsiI TTATAA 1 cut(s) 1281
Psp5II RGGWCCY 1 cut(s) 1489
Psp6I CCWGG 1 cut(s) 1112
PspFI CCCAGC 1 cut(s) 1296
PspGI CCWGG 1 cut(s) 1112
PspN4I GGNNCC 4 cut(s) 809, 1490, 1491, 1606
PspPI GGNCC 4 cut(s) 808, 927, 1026, 1489
PspPPI RGGWCCY 1 cut(s) 1489
PstNI CAGNNNCTG 1 cut(s) 1107
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 5 cut(s) 282, 764, 865, 1203, 1421
RsaNI GTAC 5 cut(s) 281, 763, 864, 1202, 1420
RseI CAYNNNNRTG 5 cut(s) 413, 519, 935, 955, 1481
SaqAI TTAA 5 cut(s) 114, 201, 525, 993, 1343
SatI GCNGC 1 cut(s) 464
Sau3AI GATC 5 cut(s) 475, 646, 734, 1291, 1383
Sau96I GGNCC 4 cut(s) 808, 927, 1026, 1489
ScaI AGTACT 1 cut(s) 865
SchI GAGTC 2 cut(s) 560, 1098
ScrFI CCNGG 2 cut(s) 926, 1114
SduI GDGCHC 1 cut(s) 1539
SfaNI GCATC 3 cut(s) 676, 688, 1366
SfcI CTRYAG 2 cut(s) 258, 1464
SfuI TTCGAA 1 cut(s) 130
SinI GGWCC 2 cut(s) 808, 1489
SmiMI CAYNNNNRTG 5 cut(s) 413, 519, 935, 955, 1481
SmlI CTYRAG 1 cut(s) 1073
SmoI CTYRAG 1 cut(s) 1073
Sse9I AATT 9 cut(s) 56, 71, 85, 593, 749, 768, 1178, 1345, 1612
SsiI CCGC 6 cut(s) 303, 399, 689, 805, 1301, 1442
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 2 cut(s) 924, 1112
StyI CCWWGG 1 cut(s) 1413
TaaI ACNGT 9 cut(s) 232, 518, 609, 863, 934, 1201, 1472, 1480, 1547
TaiI ACGT 1 cut(s) 114
TaqI TCGA 8 cut(s) 130, 238, 385, 583, 737, 1520, 1573, 1584
TaqII GACCGA 1 cut(s) 755
TasI AATT 9 cut(s) 56, 71, 85, 593, 749, 768, 1178, 1345, 1612
TatI WGTACW 3 cut(s) 762, 863, 1419
TfiI GAWTC 2 cut(s) 633, 1007
Tru1I TTAA 5 cut(s) 114, 201, 525, 993, 1343
Tru9I TTAA 5 cut(s) 114, 201, 525, 993, 1343
TscAI CASTG 3 cut(s) 251, 643, 1483
TseFI GTSAC 2 cut(s) 457, 1097
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 2 cut(s) 457, 1097
TspRI CASTG 3 cut(s) 251, 643, 1483
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 808, 1489
XapI RAATTY 5 cut(s) 56, 85, 593, 749, 1345
XceI RCATGY 3 cut(s) 275, 631, 960
XcmI CCANNNNNNNNNTGG 1 cut(s) 611
XmiI GTMKAC 1 cut(s) 858
XmnI GAANNNNTTC 2 cut(s) 36, 749
XspI CTAG 1 cut(s) 351
ZrmI AGTACT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.