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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 2 cut(s) | 18, 111 |
| AciI | CCGC | 2 cut(s) | 66, 109 |
| AfaI | GTAC | 1 cut(s) | 96 |
| AflIII | ACRYGT | 1 cut(s) | 297 |
| AgsI | TTSAA | 1 cut(s) | 288 |
| AjnI | CCWGG | 1 cut(s) | 46 |
| AluBI | AGCT | 1 cut(s) | 226 |
| AluI | AGCT | 1 cut(s) | 226 |
| Alw21I | GWGCWC | 1 cut(s) | 228 |
| Alw26I | GTCTC | 2 cut(s) | 99, 135 |
| AoxI | GGCC | 2 cut(s) | 43, 74 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 165, 197 |
| AspS9I | GGNCC | 2 cut(s) | 44, 74 |
| AsuC2I | CCSGG | 1 cut(s) | 78 |
| BanII | GRGCYC | 2 cut(s) | 210, 228 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 78, 110 |
| Bbv12I | GWGCWC | 1 cut(s) | 228 |
| BccI | CCATC | 1 cut(s) | 128 |
| BciT130I | CCWGG | 1 cut(s) | 48 |
| BcnI | CCSGG | 1 cut(s) | 78 |
| BcoDI | GTCTC | 2 cut(s) | 99, 135 |
| Bme1390I | CCNGG | 2 cut(s) | 48, 78 |
| BmgT120I | GGNCC | 2 cut(s) | 44, 74 |
| BmrFI | CCNGG | 2 cut(s) | 48, 78 |
| BmsI | GCATC | 1 cut(s) | 106 |
| BpmI | CTGGAG | 1 cut(s) | 69 |
| BpuMI | CCSGG | 1 cut(s) | 78 |
| BsaI | GGTCTC | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 1 cut(s) | 46 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 42, 72, 132, 162 |
| BseBI | CCWGG | 1 cut(s) | 48 |
| BseDI | CCNNGG | 1 cut(s) | 46 |
| BseMII | CTCAG | 1 cut(s) | 213 |
| BseRI | GAGGAG | 1 cut(s) | 177 |
| Bsh1236I | CGCG | 2 cut(s) | 18, 111 |
| BshFI | GGCC | 2 cut(s) | 45, 76 |
| BsiHKAI | GWGCWC | 1 cut(s) | 228 |
| BsiSI | CCGG | 1 cut(s) | 77 |
| BsmAI | GTCTC | 2 cut(s) | 99, 135 |
| BsmBI | CGTCTC | 1 cut(s) | 135 |
| BsnI | GGCC | 2 cut(s) | 45, 76 |
| Bso31I | GGTCTC | 1 cut(s) | 99 |
| Bsp1286I | GDGCHC | 2 cut(s) | 210, 228 |
| BspACI | CCGC | 2 cut(s) | 66, 109 |
| BspANI | GGCC | 2 cut(s) | 45, 76 |
| BspCNI | CTCAG | 1 cut(s) | 214 |
| BspFNI | CGCG | 2 cut(s) | 18, 111 |
| BspQI | GCTCTTC | 1 cut(s) | 205 |
| BspTNI | GGTCTC | 1 cut(s) | 99 |
| BssECI | CCNNGG | 1 cut(s) | 46 |
| Bst2UI | CCWGG | 1 cut(s) | 48 |
| Bst6I | CTCTTC | 2 cut(s) | 81, 205 |
| BstC8I | GCNNGC | 1 cut(s) | 64 |
| BstDEI | CTNAG | 1 cut(s) | 222 |
| BstFNI | CGCG | 2 cut(s) | 18, 111 |
| BstMAI | GTCTC | 2 cut(s) | 99, 135 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 24 |
| BstNI | CCWGG | 1 cut(s) | 48 |
| BstNSI | RCATGY | 1 cut(s) | 301 |
| BstSCI | CCNGG | 2 cut(s) | 46, 76 |
| BstUI | CGCG | 2 cut(s) | 18, 111 |
| BsuRI | GGCC | 2 cut(s) | 45, 76 |
| BtgZI | GCGATG | 1 cut(s) | 126 |
| Cac8I | GCNNGC | 1 cut(s) | 64 |
| Cfr13I | GGNCC | 2 cut(s) | 44, 74 |
| Csp6I | GTAC | 1 cut(s) | 95 |
| CviAII | CATG | 1 cut(s) | 298 |
| CviJI | RGCY | 5 cut(s) | 45, 76, 208, 226, 282 |
| CviKI_1 | RGCY | 5 cut(s) | 45, 76, 208, 226, 282 |
| CviQI | GTAC | 1 cut(s) | 95 |
| DdeI | CTNAG | 1 cut(s) | 222 |
| Eam1104I | CTCTTC | 2 cut(s) | 81, 205 |
| EarI | CTCTTC | 2 cut(s) | 81, 205 |
| Ecl136II | GAGCTC | 1 cut(s) | 226 |
| Eco24I | GRGCYC | 2 cut(s) | 210, 228 |
| Eco31I | GGTCTC | 1 cut(s) | 99 |
| Eco53kI | GAGCTC | 1 cut(s) | 226 |
| EcoICRI | GAGCTC | 1 cut(s) | 226 |
| EcoO109I | RGGNCCY | 1 cut(s) | 44 |
| EcoRII | CCWGG | 1 cut(s) | 46 |
| EcoT38I | GRGCYC | 2 cut(s) | 210, 228 |
| Esp3I | CGTCTC | 1 cut(s) | 135 |
| FaeI | CATG | 1 cut(s) | 301 |
| FaiI | YATR | 2 cut(s) | 72, 299 |
| FatI | CATG | 1 cut(s) | 297 |
| FauI | CCCGC | 1 cut(s) | 59 |
| FriOI | GRGCYC | 2 cut(s) | 210, 228 |
| GsuI | CTGGAG | 1 cut(s) | 69 |
| HaeIII | GGCC | 2 cut(s) | 45, 76 |
| HapII | CCGG | 1 cut(s) | 77 |
| Hin1II | CATG | 1 cut(s) | 301 |
| HinfI | GANTC | 1 cut(s) | 51 |
| HpaII | CCGG | 1 cut(s) | 77 |
| Hpy188I | TCNGA | 1 cut(s) | 223 |
| Hpy188III | TCNNGA | 1 cut(s) | 83 |
| Hpy99I | CGWCG | 1 cut(s) | 125 |
| HpyAV | CCTTC | 1 cut(s) | 161 |
| HpyCH4IV | ACGT | 1 cut(s) | 144 |
| HpyCH4V | TGCA | 1 cut(s) | 215 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 24 |
| HpyF3I | CTNAG | 1 cut(s) | 222 |
| HpySE526I | ACGT | 1 cut(s) | 144 |
| Hsp92II | CATG | 1 cut(s) | 301 |
| LguI | GCTCTTC | 1 cut(s) | 205 |
| LpnPI | CCDG | 4 cut(s) | 33, 60, 90, 189 |
| LweI | GCATC | 1 cut(s) | 106 |
| MaeII | ACGT | 1 cut(s) | 144 |
| MboII | GAAGA | 2 cut(s) | 98, 192 |
| MfeI | CAATTG | 1 cut(s) | 288 |
| MhlI | GDGCHC | 2 cut(s) | 210, 228 |
| MluCI | AATT | 2 cut(s) | 180, 288 |
| MlyI | GAGTC | 1 cut(s) | 60 |
| MmeI | TCCRAC | 1 cut(s) | 250 |
| MnlI | CCTC | 8 cut(s) | 35, 65, 82, 155, 164, 179, 242, 245 |
| MseI | TTAA | 2 cut(s) | 6, 302 |
| MspI | CCGG | 1 cut(s) | 77 |
| MspR9I | CCNGG | 2 cut(s) | 48, 78 |
| MunI | CAATTG | 1 cut(s) | 288 |
| MvaI | CCWGG | 1 cut(s) | 48 |
| MvnI | CGCG | 2 cut(s) | 18, 111 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 24 |
| NciI | CCSGG | 1 cut(s) | 78 |
| NlaIII | CATG | 1 cut(s) | 301 |
| NspI | RCATGY | 1 cut(s) | 301 |
| PciI | ACATGT | 1 cut(s) | 297 |
| PciSI | GCTCTTC | 1 cut(s) | 205 |
| PflFI | GACNNNGTC | 1 cut(s) | 146 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| PscI | ACATGT | 1 cut(s) | 297 |
| Psp124BI | GAGCTC | 1 cut(s) | 228 |
| Psp6I | CCWGG | 1 cut(s) | 46 |
| PspGI | CCWGG | 1 cut(s) | 46 |
| PspPI | GGNCC | 2 cut(s) | 44, 74 |
| PsyI | GACNNNGTC | 1 cut(s) | 146 |
| RsaI | GTAC | 1 cut(s) | 96 |
| RsaNI | GTAC | 1 cut(s) | 95 |
| SacI | GAGCTC | 1 cut(s) | 228 |
| SapI | GCTCTTC | 1 cut(s) | 205 |
| SaqAI | TTAA | 2 cut(s) | 6, 302 |
| Sau96I | GGNCC | 2 cut(s) | 44, 74 |
| SchI | GAGTC | 1 cut(s) | 60 |
| ScrFI | CCNGG | 2 cut(s) | 48, 78 |
| SduI | GDGCHC | 2 cut(s) | 210, 228 |
| SetI | ASST | 8 cut(s) | 12, 93, 147, 160, 190, 228, 234, 256 |
| SfaNI | GCATC | 1 cut(s) | 106 |
| Sse9I | AATT | 2 cut(s) | 180, 288 |
| SsiI | CCGC | 2 cut(s) | 66, 109 |
| SstI | GAGCTC | 1 cut(s) | 228 |
| StyD4I | CCNGG | 2 cut(s) | 46, 76 |
| TaiI | ACGT | 1 cut(s) | 147 |
| TaqI | TCGA | 2 cut(s) | 99, 184 |
| TasI | AATT | 2 cut(s) | 180, 288 |
| Tru1I | TTAA | 2 cut(s) | 6, 302 |
| Tru9I | TTAA | 2 cut(s) | 6, 302 |
| Tth111I | GACNNNGTC | 1 cut(s) | 146 |
| XceI | RCATGY | 1 cut(s) | 301 |