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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 313 |
| Acc16I | TGCGCA | 1 cut(s) | 354 |
| Acc36I | ACCTGC | 1 cut(s) | 313 |
| AccBSI | CCGCTC | 1 cut(s) | 180 |
| AccII | CGCG | 1 cut(s) | 239 |
| AciI | CCGC | 1 cut(s) | 180 |
| AfaI | GTAC | 2 cut(s) | 18, 24 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 321, 388 |
| AgsI | TTSAA | 1 cut(s) | 377 |
| AjnI | CCWGG | 2 cut(s) | 196, 206 |
| AluBI | AGCT | 2 cut(s) | 221, 358 |
| AluI | AGCT | 2 cut(s) | 221, 358 |
| Alw21I | GWGCWC | 1 cut(s) | 157 |
| AoxI | GGCC | 1 cut(s) | 202 |
| ApeKI | GCWGC | 1 cut(s) | 355 |
| AspLEI | GCGC | 3 cut(s) | 239, 241, 355 |
| AspS9I | GGNCC | 1 cut(s) | 203 |
| AsuHPI | GGTGA | 2 cut(s) | 269, 294 |
| BbsI | GAAGAC | 2 cut(s) | 190, 384 |
| Bbv12I | GWGCWC | 1 cut(s) | 157 |
| BbvI | GCAGC | 1 cut(s) | 367 |
| BccI | CCATC | 2 cut(s) | 78, 314 |
| BceAI | ACGGC | 1 cut(s) | 299 |
| BciT130I | CCWGG | 2 cut(s) | 198, 208 |
| BfmI | CTRYAG | 1 cut(s) | 309 |
| BfuAI | ACCTGC | 1 cut(s) | 313 |
| BisI | GCNGC | 1 cut(s) | 356 |
| BlsI | GCNGC | 1 cut(s) | 357 |
| Bme1390I | CCNGG | 2 cut(s) | 198, 208 |
| BmgT120I | GGNCC | 1 cut(s) | 203 |
| BmiI | GGNNCC | 1 cut(s) | 205 |
| BmrFI | CCNGG | 2 cut(s) | 198, 208 |
| BpiI | GAAGAC | 2 cut(s) | 190, 384 |
| BpuEI | CTTGAG | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 1 cut(s) | 206 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 321, 388 |
| Bse1I | ACTGG | 1 cut(s) | 126 |
| BseBI | CCWGG | 2 cut(s) | 198, 208 |
| BseDI | CCNNGG | 1 cut(s) | 206 |
| BseGI | GGATG | 1 cut(s) | 397 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 321, 388 |
| BseMII | CTCAG | 2 cut(s) | 254, 318 |
| BseNI | ACTGG | 1 cut(s) | 126 |
| BsePI | GCGCGC | 1 cut(s) | 237 |
| BseXI | GCAGC | 1 cut(s) | 367 |
| Bsh1236I | CGCG | 1 cut(s) | 239 |
| BshFI | GGCC | 1 cut(s) | 204 |
| BsiHKAI | GWGCWC | 1 cut(s) | 157 |
| BslFI | GGGAC | 2 cut(s) | 337, 361 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 321, 388 |
| BsmFI | GGGAC | 2 cut(s) | 337, 361 |
| BsnI | GGCC | 1 cut(s) | 204 |
| Bsp1286I | GDGCHC | 1 cut(s) | 157 |
| BspACI | CCGC | 1 cut(s) | 180 |
| BspANI | GGCC | 1 cut(s) | 204 |
| BspCNI | CTCAG | 2 cut(s) | 255, 319 |
| BspFNI | CGCG | 1 cut(s) | 239 |
| BspLI | GGNNCC | 1 cut(s) | 205 |
| BspMI | ACCTGC | 1 cut(s) | 313 |
| BsrBI | CCGCTC | 1 cut(s) | 180 |
| BsrI | ACTGG | 1 cut(s) | 126 |
| BssECI | CCNNGG | 1 cut(s) | 206 |
| BssHII | GCGCGC | 1 cut(s) | 237 |
| Bst2UI | CCWGG | 2 cut(s) | 198, 208 |
| Bst4CI | ACNGT | 3 cut(s) | 421, 451, 464 |
| BstC8I | GCNNGC | 2 cut(s) | 239, 489 |
| BstDEI | CTNAG | 2 cut(s) | 263, 327 |
| BstF5I | GGATG | 1 cut(s) | 397 |
| BstFNI | CGCG | 1 cut(s) | 239 |
| BstHHI | GCGC | 3 cut(s) | 239, 241, 355 |
| BstNI | CCWGG | 2 cut(s) | 198, 208 |
| BstNSI | RCATGY | 1 cut(s) | 143 |
| BstSCI | CCNGG | 2 cut(s) | 196, 206 |
| BstSFI | CTRYAG | 1 cut(s) | 309 |
| BstUI | CGCG | 1 cut(s) | 239 |
| BstV1I | GCAGC | 1 cut(s) | 367 |
| BstV2I | GAAGAC | 2 cut(s) | 190, 384 |
| BsuRI | GGCC | 1 cut(s) | 204 |
| BtsCI | GGATG | 1 cut(s) | 397 |
| BveI | ACCTGC | 1 cut(s) | 313 |
| Cac8I | GCNNGC | 2 cut(s) | 239, 489 |
| CfoI | GCGC | 3 cut(s) | 239, 241, 355 |
| Cfr13I | GGNCC | 1 cut(s) | 203 |
| CsiI | ACCWGGT | 1 cut(s) | 196 |
| Csp6I | GTAC | 2 cut(s) | 17, 23 |
| CviAII | CATG | 2 cut(s) | 34, 140 |
| CviJI | RGCY | 5 cut(s) | 55, 204, 221, 314, 358 |
| CviKI_1 | RGCY | 5 cut(s) | 55, 204, 221, 314, 358 |
| CviQI | GTAC | 2 cut(s) | 17, 23 |
| DdeI | CTNAG | 2 cut(s) | 263, 327 |
| EcoRII | CCWGG | 2 cut(s) | 196, 206 |
| EcoT22I | ATGCAT | 2 cut(s) | 6, 145 |
| FaeI | CATG | 2 cut(s) | 37, 143 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 39, 71 |
| FaqI | GGGAC | 2 cut(s) | 337, 361 |
| FatI | CATG | 2 cut(s) | 33, 139 |
| FauNDI | CATATG | 1 cut(s) | 145 |
| Fnu4HI | GCNGC | 1 cut(s) | 356 |
| FokI | GGATG | 1 cut(s) | 404 |
| Fsp4HI | GCNGC | 1 cut(s) | 356 |
| FspI | TGCGCA | 1 cut(s) | 354 |
| GlaI | GCGC | 3 cut(s) | 238, 240, 354 |
| GluI | GCNGC | 1 cut(s) | 356 |
| HaeIII | GGCC | 1 cut(s) | 204 |
| HhaI | GCGC | 3 cut(s) | 239, 241, 355 |
| Hin1II | CATG | 2 cut(s) | 37, 143 |
| Hin6I | GCGC | 3 cut(s) | 237, 239, 353 |
| HinP1I | GCGC | 3 cut(s) | 237, 239, 353 |
| HinfI | GANTC | 4 cut(s) | 12, 38, 107, 215 |
| HphI | GGTGA | 2 cut(s) | 269, 294 |
| Hpy166II | GTNNAC | 1 cut(s) | 260 |
| Hpy188I | TCNGA | 6 cut(s) | 11, 43, 67, 97, 112, 137 |
| Hpy188III | TCNNGA | 1 cut(s) | 457 |
| Hpy8I | GTNNAC | 1 cut(s) | 260 |
| Hpy99I | CGWCG | 1 cut(s) | 468 |
| HpyAV | CCTTC | 3 cut(s) | 41, 361, 394 |
| HpyCH4III | ACNGT | 3 cut(s) | 421, 451, 464 |
| HpyCH4IV | ACGT | 1 cut(s) | 253 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 143 |
| HpyF3I | CTNAG | 2 cut(s) | 263, 327 |
| HpySE526I | ACGT | 1 cut(s) | 253 |
| Hsp92II | CATG | 2 cut(s) | 37, 143 |
| HspAI | GCGC | 3 cut(s) | 237, 239, 353 |
| LpnPI | CCDG | 9 cut(s) | 139, 183, 193, 210, 220, 300, 318, 395, 473 |
| Lsp1109I | GCAGC | 1 cut(s) | 367 |
| MabI | ACCWGGT | 1 cut(s) | 196 |
| MaeII | ACGT | 1 cut(s) | 253 |
| MaeIII | GTNAC | 1 cut(s) | 295 |
| MbiI | CCGCTC | 1 cut(s) | 180 |
| MboII | GAAGA | 4 cut(s) | 125, 195, 389, 437 |
| MhlI | GDGCHC | 1 cut(s) | 157 |
| MluCI | AATT | 1 cut(s) | 119 |
| MlyI | GAGTC | 2 cut(s) | 21, 47 |
| MmeI | TCCRAC | 1 cut(s) | 440 |
| MnlI | CCTC | 4 cut(s) | 97, 160, 258, 475 |
| Mph1103I | ATGCAT | 2 cut(s) | 6, 145 |
| MseI | TTAA | 1 cut(s) | 360 |
| MslI | CAYNNNNRTG | 2 cut(s) | 144, 162 |
| MspR9I | CCNGG | 2 cut(s) | 198, 208 |
| MvaI | CCWGG | 2 cut(s) | 198, 208 |
| MvnI | CGCG | 1 cut(s) | 239 |
| NdeI | CATATG | 1 cut(s) | 145 |
| NlaIII | CATG | 2 cut(s) | 37, 143 |
| NlaIV | GGNNCC | 1 cut(s) | 205 |
| NsbI | TGCGCA | 1 cut(s) | 354 |
| NsiI | ATGCAT | 2 cut(s) | 6, 145 |
| NspI | RCATGY | 1 cut(s) | 143 |
| PaqCI | CACCTGC | 1 cut(s) | 313 |
| PauI | GCGCGC | 1 cut(s) | 237 |
| PfeI | GAWTC | 2 cut(s) | 107, 215 |
| PkrI | GCNGC | 1 cut(s) | 357 |
| PleI | GAGTC | 2 cut(s) | 20, 46 |
| PpsI | GAGTC | 2 cut(s) | 20, 46 |
| Psp6I | CCWGG | 2 cut(s) | 196, 206 |
| PspGI | CCWGG | 2 cut(s) | 196, 206 |
| PspN4I | GGNNCC | 1 cut(s) | 205 |
| PspPI | GGNCC | 1 cut(s) | 203 |
| PteI | GCGCGC | 1 cut(s) | 237 |
| RsaI | GTAC | 2 cut(s) | 18, 24 |
| RsaNI | GTAC | 2 cut(s) | 17, 23 |
| RseI | CAYNNNNRTG | 2 cut(s) | 144, 162 |
| SaqAI | TTAA | 1 cut(s) | 360 |
| SatI | GCNGC | 1 cut(s) | 356 |
| Sau96I | GGNCC | 1 cut(s) | 203 |
| SchI | GAGTC | 2 cut(s) | 21, 47 |
| ScrFI | CCNGG | 2 cut(s) | 198, 208 |
| SduI | GDGCHC | 1 cut(s) | 157 |
| SetI | ASST | 6 cut(s) | 202, 223, 256, 307, 360, 384 |
| SexAI | ACCWGGT | 1 cut(s) | 196 |
| SfcI | CTRYAG | 1 cut(s) | 309 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 144, 162 |
| SmlI | CTYRAG | 1 cut(s) | 175 |
| SmoI | CTYRAG | 1 cut(s) | 175 |
| Sse9I | AATT | 1 cut(s) | 119 |
| SsiI | CCGC | 1 cut(s) | 180 |
| StyD4I | CCNGG | 2 cut(s) | 196, 206 |
| TaaI | ACNGT | 3 cut(s) | 421, 451, 464 |
| TaiI | ACGT | 1 cut(s) | 256 |
| TaqI | TCGA | 1 cut(s) | 58 |
| TaqII | GACCGA | 1 cut(s) | 202 |
| TasI | AATT | 1 cut(s) | 119 |
| TatI | WGTACW | 1 cut(s) | 22 |
| TfiI | GAWTC | 2 cut(s) | 107, 215 |
| Tru1I | TTAA | 1 cut(s) | 360 |
| Tru9I | TTAA | 1 cut(s) | 360 |
| TseI | GCWGC | 1 cut(s) | 355 |
| TspDTI | ATGAA | 5 cut(s) | 60, 132, 162, 264, 413 |
| TspGWI | ACGGA | 2 cut(s) | 114, 494 |
| XceI | RCATGY | 1 cut(s) | 143 |
| Zsp2I | ATGCAT | 2 cut(s) | 6, 145 |