Rroxscaffold_1G00009710

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000074
Physical Location & Seq
Forward (+)
12238177 .. 12238930
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00009710.1

Sequence Viewer

Length: 525 bp
ATGGAGGATAGTCGTTTGGAAACAACAACCGGTGTAGACACTGTTTTCGTGACTGAGTTGAATAATGAAGGAGAATATGAGAATTCATATTCGACGACAAGACCTTTGAAACCAACATTACAGAGGGTCTGCGAAGAGAGGTTGTGTGCAACCCAGATCGTAGCGAAGGCATTGGTTCACATGGGAAATCTGCTAATTAATCGATATGGAGAAGGGCAATCCGGACAAACGGGTGAGAAAATCACCGGGGTTGATAATGATACAAGTGTAGCTACGTACAACGCAGAAGAAAGTTTTCAGCAGACTCGGCGAATATCTCGTAGAAAATGCCCCGTTAGGTTGATCGTTATTTACCGTCGCAACGCCGTGCATACTATGCATCGACATTTATCACCGCACACAACCATTGTTTGGCTGGACATGAGCATAGGCGCTTCGAGGTCCAATAGGAAGGTTGCGGACCATGACCTCGGCATAGGTGATTTCGCCGAGGAAGGTTTTCGTAGGTACTGCGAGTGCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.75

Weight (kDa)

6.59

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 411
AccI GTMKAC 1 cut(s) 36
AccIII TCCGGA 1 cut(s) 221
AciI CCGC 2 cut(s) 395, 458
AcsI RAATTY 1 cut(s) 82
AfaI GTAC 2 cut(s) 278, 509
AfiI CCNNNNNNNGG 1 cut(s) 411
AgeI ACCGGT 1 cut(s) 29
AgsI TTSAA 2 cut(s) 61, 109
AluBI AGCT 1 cut(s) 272
AluI AGCT 1 cut(s) 272
Aor13HI TCCGGA 1 cut(s) 221
ApoI RAATTY 1 cut(s) 82
ArsI GACNNNNNNTTYG 4 cut(s) 29, 61, 88, 120
AseI ATTAAT 1 cut(s) 198
AsiGI ACCGGT 1 cut(s) 29
Asp700I GAANNNNTTC 2 cut(s) 294, 498
AspLEI GCGC 1 cut(s) 434
AspS9I GGNCC 2 cut(s) 441, 460
AsuC2I CCSGG 1 cut(s) 247
AsuHPI GGTGA 4 cut(s) 235, 245, 384, 491
AvaII GGWCC 2 cut(s) 441, 460
BaeI ACNNNNGTAYC 2 cut(s) 252, 285
BceAI ACGGC 1 cut(s) 350
BcnI CCSGG 1 cut(s) 247
BfoI RGCGCY 1 cut(s) 435
Bme1390I CCNGG 1 cut(s) 247
Bme18I GGWCC 2 cut(s) 441, 460
BmgT120I GGNCC 2 cut(s) 441, 460
BmrFI CCNGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 388
BpuMI CCSGG 1 cut(s) 247
Bsa29I ATCGAT 1 cut(s) 202
BsaAI YACGTR 1 cut(s) 276
BsaJI CCNNGG 3 cut(s) 246, 469, 489
BsaWI WCCGGW 2 cut(s) 29, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse118I RCCGGY 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 221
BseCI ATCGAT 1 cut(s) 202
BseDI CCNNGG 3 cut(s) 246, 469, 489
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 45
BshTI ACCGGT 1 cut(s) 29
BshVI ATCGAT 1 cut(s) 202
BsiSI CCGG 3 cut(s) 30, 222, 246
BslI CCNNNNNNNGG 1 cut(s) 411
Bsp13I TCCGGA 1 cut(s) 221
Bsp143I GATC 2 cut(s) 156, 342
BspACI CCGC 2 cut(s) 395, 458
BspCNI CTCAG 1 cut(s) 46
BspDI ATCGAT 1 cut(s) 202
BspEI TCCGGA 1 cut(s) 221
BsrFI RCCGGY 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 29
BssECI CCNNGG 3 cut(s) 246, 469, 489
BssMI GATC 2 cut(s) 156, 342
Bst4CI ACNGT 2 cut(s) 43, 356
Bst6I CTCTTC 1 cut(s) 129
BstAPI GCANNNNNTGC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 54
BstH2I RGCGCY 1 cut(s) 435
BstHHI GCGC 1 cut(s) 434
BstKTI GATC 2 cut(s) 159, 345
BstMBI GATC 2 cut(s) 156, 342
BstMWI GCNNNNNNNGC 2 cut(s) 307, 376
BstSCI CCNGG 1 cut(s) 245
BstSNI TACGTA 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 202
BsuTUI ATCGAT 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 39
CfoI GCGC 1 cut(s) 434
Cfr10I RCCGGY 1 cut(s) 29
Cfr13I GGNCC 2 cut(s) 441, 460
ClaI ATCGAT 1 cut(s) 202
Csp6I GTAC 2 cut(s) 277, 508
CspAI ACCGGT 1 cut(s) 29
CviAII CATG 3 cut(s) 181, 421, 464
CviJI RGCY 2 cut(s) 272, 415
CviKI_1 RGCY 2 cut(s) 272, 415
CviQI GTAC 2 cut(s) 277, 508
DdeI CTNAG 1 cut(s) 54
DpnI GATC 2 cut(s) 158, 344
DpnII GATC 2 cut(s) 156, 342
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco105I TACGTA 1 cut(s) 276
Eco47I GGWCC 2 cut(s) 441, 460
EcoRI GAATTC 1 cut(s) 82
EcoT22I ATGCAT 1 cut(s) 381
FaeI CATG 3 cut(s) 184, 424, 467
FatI CATG 3 cut(s) 180, 420, 463
FauNDI CATATG 1 cut(s) 521
FblI GTMKAC 1 cut(s) 36
GlaI GCGC 1 cut(s) 433
HaeII RGCGCY 1 cut(s) 435
HapII CCGG 3 cut(s) 30, 222, 246
HhaI GCGC 1 cut(s) 434
Hin1II CATG 3 cut(s) 184, 424, 467
Hin6I GCGC 1 cut(s) 432
HinP1I GCGC 1 cut(s) 432
HinfI GANTC 1 cut(s) 304
HpaII CCGG 3 cut(s) 30, 222, 246
HphI GGTGA 4 cut(s) 235, 245, 384, 491
Hpy166II GTNNAC 2 cut(s) 37, 178
Hpy188III TCNNGA 2 cut(s) 49, 222
Hpy8I GTNNAC 2 cut(s) 37, 178
Hpy99I CGWCG 2 cut(s) 97, 360
HpyAV CCTTC 5 cut(s) 62, 160, 206, 445, 488
HpyCH4III ACNGT 2 cut(s) 43, 356
HpyCH4IV ACGT 1 cut(s) 275
HpyCH4V TGCA 4 cut(s) 149, 370, 379, 519
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 376
HpyF3I CTNAG 1 cut(s) 54
HpySE526I ACGT 1 cut(s) 275
Hsp92II CATG 3 cut(s) 184, 424, 467
HspAI GCGC 1 cut(s) 432
Kpn2I TCCGGA 1 cut(s) 221
Kzo9I GATC 2 cut(s) 156, 342
LpnPI CCDG 5 cut(s) 43, 167, 235, 259, 401
LweI GCATC 1 cut(s) 388
MaeII ACGT 1 cut(s) 275
MaeIII GTNAC 1 cut(s) 49
MalI GATC 2 cut(s) 158, 344
MboI GATC 2 cut(s) 156, 342
MboII GAAGA 2 cut(s) 146, 299
MluCI AATT 2 cut(s) 82, 195
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 5 cut(s) 117, 132, 432, 479, 484
Mph1103I ATGCAT 1 cut(s) 381
MroI TCCGGA 1 cut(s) 221
MroXI GAANNNNTTC 2 cut(s) 294, 498
MseI TTAA 1 cut(s) 198
MspI CCGG 3 cut(s) 30, 222, 246
MspR9I CCNGG 1 cut(s) 247
MwoI GCNNNNNNNGC 2 cut(s) 307, 376
NciI CCSGG 1 cut(s) 247
NdeI CATATG 1 cut(s) 521
NdeII GATC 2 cut(s) 156, 342
NlaIII CATG 3 cut(s) 184, 424, 467
NmeAIII GCCGAG 3 cut(s) 286, 450, 514
NmuCI GTSAC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 381
PdmI GAANNNNTTC 2 cut(s) 294, 498
PflMI CCANNNNNTGG 1 cut(s) 411
PinAI ACCGGT 1 cut(s) 29
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Ppu21I YACGTR 1 cut(s) 276
PshBI ATTAAT 1 cut(s) 198
PspPI GGNCC 2 cut(s) 441, 460
RsaI GTAC 2 cut(s) 278, 509
RsaNI GTAC 2 cut(s) 277, 508
SaqAI TTAA 1 cut(s) 198
Sau3AI GATC 2 cut(s) 156, 342
Sau96I GGNCC 2 cut(s) 441, 460
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 247
SfaNI GCATC 1 cut(s) 388
SinI GGWCC 2 cut(s) 441, 460
SnaBI TACGTA 1 cut(s) 276
Sse9I AATT 2 cut(s) 82, 195
SsiI CCGC 2 cut(s) 395, 458
StyD4I CCNGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 43, 356
TaiI ACGT 1 cut(s) 278
TaqI TCGA 4 cut(s) 92, 202, 382, 437
TasI AATT 2 cut(s) 82, 195
Tru1I TTAA 1 cut(s) 198
Tru9I TTAA 1 cut(s) 198
TscAI CASTG 1 cut(s) 46
TseFI GTSAC 1 cut(s) 49
Tsp45I GTSAC 1 cut(s) 49
TspDTI ATGAA 2 cut(s) 75, 81
TspRI CASTG 1 cut(s) 46
Van91I CCANNNNNTGG 1 cut(s) 411
VpaK11BI GGWCC 2 cut(s) 441, 460
VspI ATTAAT 1 cut(s) 198
XapI RAATTY 1 cut(s) 82
XcmI CCANNNNNNNNNTGG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 36
XmnI GAANNNNTTC 2 cut(s) 294, 498
Zsp2I ATGCAT 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.