Rh1DG059200

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000074
Physical Location & Seq
Forward (+)
10246250 .. 10267865
21616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG059200.1

Sequence Viewer

Length: 2199 bp
ATGTCTCAGCATGAACACGACGCAATCGTCCACAGGCCACGTGTCCGCCACGGCATAGCATATATTCTGACGTACACTGAAAGGGTTTCAAGGCCTACGCCAATACATAAGGAAGCAAAGGATTCTGATGAAGACGAAATCGAACTGCCACAATTTCAAGGAGATGCTGTAAGATCTCCGGTTAGCGTCTCATACCGTCCCATTTCCCCTCATCTTGGCCCATCATCACCAAGGCAACAGCTGATAGCACACTTTAGTGACTTTACACACGAGCTTGGATGGGATACTGAGGCTCTTTTTCCCCTCCCAAATGAAGATGCTACAAAAATAGAGTTAATATGGAGAACAACGAAGCAGGTCTACGCTACACTGACCATCTGTACCACAGCTCGTTACTATCAGACGAAGAAGTATCTGATGATGAATGCTTATTACGAATTGGGGAAGATAAGGAAGGGTTATTTTGTGATGGAGGAGAGAAAGGGCTTGATCAAACATCTGAAATTGGATGTTGTGTTCAGCAGCGTATGTGAAGCTGAAAAGTTCTATCATTTATACTCTCGTGTTATTGGATTCAGCACAAGGAGGGACAGGAAGGTTAGAGCATATCGTTCCGAATTTGTCATAAGAAGGGAGTGGGTATGTTCGAAACAGGGCAAAGCAACAATTAAGGTCAAGAAACAGGGAGTGAAAGAAAAGGGGAACAGTCTGATCCAAGCTGAGAAGAAGAAGATGAAGAGGAATCAATGCCCAAGGGGTAAAAGATATAGCCGAGTTGGATGCATGGCCGCATTTGGAATTCGATACTGCAAGGAAAGGAAGAAGTATTTCGTATCAAAGTTCGTAACCAATCACAATCATGATGTTGCTGTTTCGGAAGAGGTTCAGTTCCTTCGTTCTCACCGAGGAGTGAATGACAGCGTCATTTCCCAGGTTGAGGGTCTACAGAAAGCACAAGTGCACATAAGCCGGATATATGAACTCCTTGTTGAGCAAGCTGGTGGCCAACAATTTCTGCCGTTCACCCTCAAAGATTTGTACAATGAACTTGATAAGAGGAAGAAAGCAGTGGGCTTAGATGGGGATGCTCATTCTGCCATCACTTGGATGCAAATCAGGGCATTGGAGGAAAAACAATTCTACTGCAAGTTGGAGAGGACACTTGGGCGGATTCGTAATCGTGTATTGCAAGACAATTTCTTAGGTAAAACTTGTTCCCCTGTTTTAGAGACACACATGCGTGGTTTGGAGGAAGAGGCTGCCAAAATCTTCACCCATGATATATTTGTGATGATTAAGTCACAAATTCTATTTGAGAGGAGGTTTGTCGTACGCCATAGTTTTTCGTTTCCTCATTCTGACTCTATCATGTTCTACCTGACCCAATATGAGAGGACTGAACGCAGATGGTGTGTAGAATTTAGAGTCAACGAAGGGAATCCACAATGGCTATGCTCCTGCAAGCAGTTTGAATGTGATGGAATCCCTTGTGGTCACATATTTTGTGTGCTGAAGTATGAAATGGTTTCGACATATCCGAAGAGCCTGATAAGGCATAGGTGGAGCAGAGCTGTTGCGGAGTCAACCATGGCACCAAATTTACCGGGCAAGTTTAGTGATAAGGCTGCCCAAGTTGAAAGATATTCTGCTCTGATAGTAGAGGCCACAAAAGTATGTGTAAACTATTCTTTCAGCCGCGAAGGATTCGGTATTGGGATGATGAAATTCCAAAAGCTGAAAAAGGCTTCGATGCAATACAATAGGGGTGAGAAACAGCGAAATACGAATGTGGGAAAGTCTCCCAACGTGGTAAGGGACCCTCCCATTGCAAGAACAAAGGGGAGCCAGAAGCAGAGACCGAGTAATACAAACCAAACCATACCTGGTCCGAAAGGGTGTGGATTATGTGCTCAACCTGGGCACAACCGTCGAACGTGTCCTACTCTTGAGGGAGAAGAACAGAACTGCTCAGGAAATCCAGTAATGAAGCTGATCAAACGGAACAGAACAGAAGCTCAAACGGTGCCGAAGAAGAAATTTAATGAAGCTGATCTGACATGTCAACTGGCTCCTATTTTCCCATTCAATGATTCTCAGGCATATACCAATCCTCTTTGTCCATCTTTGTCGTTTGACTTGAACGAGGTCGCCTGCGCTGACATAGATGCCTCAATGTCAATACGGAGCTTTCTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

732

Amino Acids

84.41

Weight (kDa)

9.51

Isoelectric Point (pI)

45.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 181 - 289 3.2e-12 FAR1 DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 26
Acc36I ACCTGC 1 cut(s) 346
AccB1I GGYRCC 2 cut(s) 1591, 2023
AccB7I CCANNNNNTGG 1 cut(s) 1104
AccI GTMKAC 2 cut(s) 360, 943
AccII CGCG 1 cut(s) 1698
AciI CCGC 5 cut(s) 46, 789, 1168, 1577, 1696
AclWI GGATC 1 cut(s) 706
AcoI YGGCCR 2 cut(s) 786, 1003
AcsI RAATTY 7 cut(s) 617, 798, 1305, 1418, 1597, 1724, 2036
AcuI CTGAAG 1 cut(s) 1532
AcvI CACGTG 1 cut(s) 41
AfaI GTAC 4 cut(s) 74, 382, 1040, 1332
AfiI CCNNNNNNNGG 3 cut(s) 215, 937, 1104
AflIII ACRYGT 3 cut(s) 40, 1934, 2057
AgsI TTSAA 6 cut(s) 90, 158, 1472, 1637, 2086, 2140
AjnI CCWGG 3 cut(s) 930, 1882, 1915
AleI CACNNNNGTG 2 cut(s) 255, 1239
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
Alw21I GWGCWC 2 cut(s) 963, 1912
Alw26I GTCTC 5 cut(s) 9, 193, 1223, 1803, 1849
Alw44I GTGCAC 1 cut(s) 959
AlwI GGATC 1 cut(s) 706
AoxI GGCC 6 cut(s) 35, 92, 217, 786, 1003, 1662
ApaLI GTGCAC 1 cut(s) 959
ApeKI GCWGC 3 cut(s) 522, 1259, 1625
ApoI RAATTY 7 cut(s) 617, 798, 1305, 1418, 1597, 1724, 2036
Asp700I GAANNNNTTC 2 cut(s) 827, 882
AspLEI GCGC 1 cut(s) 2156
AspS9I GGNCC 3 cut(s) 218, 1816, 1886
AsuC2I CCSGG 1 cut(s) 1605
AsuHPI GGTGA 5 cut(s) 219, 893, 1015, 1264, 1778
AsuII TTCGAA 1 cut(s) 647
AvaII GGWCC 2 cut(s) 1816, 1886
BaeGI GKGCMC 2 cut(s) 963, 1923
BalI TGGCCA 1 cut(s) 1005
BanI GGYRCC 2 cut(s) 1591, 2023
BarI GAAGNNNNNNTAC 2 cut(s) 344, 376
BauI CACGAG 2 cut(s) 269, 561
BbrPI CACGTG 1 cut(s) 41
BbsI GAAGAC 1 cut(s) 138
Bbv12I GWGCWC 2 cut(s) 963, 1912
BbvI GCAGC 3 cut(s) 534, 1246, 1612
BccI CCATC 9 cut(s) 229, 273, 383, 463, 1073, 1106, 1401, 1472, 2128
BceAI ACGGC 2 cut(s) 67, 1003
BcgI CGANNNNNNTGC 4 cut(s) 762, 796, 1910, 1944
BciT130I CCWGG 3 cut(s) 932, 1884, 1917
BciVI GTATCC 1 cut(s) 277
BclI TGATCA 2 cut(s) 489, 1992
BcnI CCSGG 1 cut(s) 1605
BcoDI GTCTC 5 cut(s) 9, 193, 1223, 1803, 1849
BfmI CTRYAG 1 cut(s) 944
BfuAI ACCTGC 1 cut(s) 346
BfuI GTATCC 1 cut(s) 277
BglII AGATCT 1 cut(s) 173
BisI GCNGC 5 cut(s) 523, 789, 1260, 1626, 1696
BlsI GCNGC 5 cut(s) 524, 790, 1261, 1627, 1697
Bme1390I CCNGG 4 cut(s) 932, 1605, 1884, 1917
Bme18I GGWCC 2 cut(s) 1816, 1886
BmgT120I GGNCC 3 cut(s) 218, 1816, 1886
BmiI GGNNCC 6 cut(s) 1593, 1817, 1818, 1844, 2025, 2070
BmrFI CCNGG 4 cut(s) 932, 1605, 1884, 1917
BmsI GCATC 7 cut(s) 154, 307, 770, 1075, 1098, 1740, 2155
BpiI GAAGAC 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 1969
Bpu14I TTCGAA 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 1967
BpuMI CCSGG 1 cut(s) 1605
BsaAI YACGTR 1 cut(s) 41
BsaBI GATNNNNATC 1 cut(s) 1112
BsaI GGTCTC 1 cut(s) 1849
BsaJI CCNNGG 7 cut(s) 49, 230, 752, 904, 930, 1587, 1916
BsaWI WCCGGW 1 cut(s) 178
BsaXI ACNNNNNCTCC 2 cut(s) 153, 183
Bsc4I CCNNNNNNNGG 3 cut(s) 215, 937, 1104
Bse1I ACTGG 2 cut(s) 1979, 2070
Bse3DI GCAATG 1 cut(s) 1824
Bse8I GATNNNNATC 1 cut(s) 1112
BseBI CCWGG 3 cut(s) 932, 1884, 1917
BseDI CCNNGG 7 cut(s) 49, 230, 752, 904, 930, 1587, 1916
BseGI GGATG 6 cut(s) 284, 514, 785, 1090, 1113, 1722
BseJI GATNNNNATC 1 cut(s) 1112
BseLI CCNNNNNNNGG 3 cut(s) 215, 937, 1104
BseMI GCAATG 1 cut(s) 1824
BseMII CTCAG 5 cut(s) 20, 279, 711, 1983, 2108
BseNI ACTGG 2 cut(s) 1979, 2070
BseRI GAGGAG 3 cut(s) 488, 921, 1333
BseSI GKGCMC 2 cut(s) 963, 1923
BseXI GCAGC 3 cut(s) 534, 1246, 1612
Bsh1236I CGCG 1 cut(s) 1698
BshFI GGCC 6 cut(s) 37, 94, 219, 788, 1005, 1664
BshNI GGYRCC 2 cut(s) 1591, 2023
BsiHKAI GWGCWC 2 cut(s) 963, 1912
BsiSI CCGG 3 cut(s) 179, 970, 1604
BsiWI CGTACG 1 cut(s) 1330
BslFI GGGAC 3 cut(s) 183, 602, 1829
BslI CCNNNNNNNGG 3 cut(s) 215, 937, 1104
BsmAI GTCTC 5 cut(s) 9, 193, 1223, 1803, 1849
BsmBI CGTCTC 1 cut(s) 193
BsmFI GGGAC 3 cut(s) 183, 602, 1829
BsmI GAATGC 1 cut(s) 430
BsnI GGCC 6 cut(s) 37, 94, 219, 788, 1005, 1664
Bso31I GGTCTC 1 cut(s) 1849
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 3 cut(s) 963, 1912, 1923
Bsp1407I TGTACA 1 cut(s) 1038
Bsp143I GATC 5 cut(s) 173, 489, 711, 1992, 2050
Bsp19I CCATGG 1 cut(s) 1587
BspACI CCGC 5 cut(s) 46, 789, 1168, 1577, 1696
BspANI GGCC 6 cut(s) 37, 94, 219, 788, 1005, 1664
BspCNI CTCAG 5 cut(s) 19, 280, 712, 1982, 2107
BspFNI CGCG 1 cut(s) 1698
BspHI TCATGA 1 cut(s) 859
BspLI GGNNCC 6 cut(s) 1593, 1817, 1818, 1844, 2025, 2070
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 1 cut(s) 706
BspQI GCTCTTC 1 cut(s) 1535
BspT104I TTCGAA 1 cut(s) 647
BspT107I GGYRCC 2 cut(s) 1591, 2023
BspTNI GGTCTC 1 cut(s) 1849
BsrDI GCAATG 1 cut(s) 1824
BsrGI TGTACA 1 cut(s) 1038
BsrI ACTGG 2 cut(s) 1979, 2070
BssECI CCNNGG 7 cut(s) 49, 230, 752, 904, 930, 1587, 1916
BssMI GATC 5 cut(s) 173, 489, 711, 1992, 2050
BssSI CACGAG 2 cut(s) 269, 561
BssT1I CCWWGG 3 cut(s) 230, 752, 1587
Bst2BI CACGAG 2 cut(s) 269, 561
Bst2UI CCWGG 3 cut(s) 932, 1884, 1917
Bst4CI ACNGT 4 cut(s) 197, 707, 1928, 2023
Bst6I CTCTTC 4 cut(s) 731, 873, 1248, 1535
BstAUI TGTACA 1 cut(s) 1038
BstBAI YACGTR 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 647
BstC8I GCNNGC 3 cut(s) 996, 1463, 2152
BstDEI CTNAG 7 cut(s) 6, 288, 720, 1075, 1201, 1969, 2094
BstDSI CCRYGG 2 cut(s) 49, 1587
BstF5I GGATG 6 cut(s) 284, 514, 785, 1090, 1113, 1722
BstFNI CGCG 1 cut(s) 1698
BstHHI GCGC 1 cut(s) 2156
BstKTI GATC 5 cut(s) 176, 492, 714, 1995, 2053
BstMAI GTCTC 5 cut(s) 9, 193, 1223, 1803, 1849
BstMBI GATC 5 cut(s) 173, 489, 711, 1992, 2050
BstMWI GCNNNNNNNGC 1 cut(s) 1094
BstNI CCWGG 3 cut(s) 932, 1884, 1917
BstNSI RCATGY 2 cut(s) 1240, 2061
BstSCI CCNGG 4 cut(s) 930, 1603, 1882, 1915
BstSFI CTRYAG 1 cut(s) 944
BstSLI GKGCMC 2 cut(s) 963, 1923
BstUI CGCG 1 cut(s) 1698
BstV1I GCAGC 3 cut(s) 534, 1246, 1612
BstV2I GAAGAC 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 173
BstYI RGATCY 1 cut(s) 173
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 6 cut(s) 37, 94, 219, 788, 1005, 1664
BtgI CCRYGG 2 cut(s) 49, 1587
BtsCI GGATG 6 cut(s) 284, 514, 785, 1090, 1113, 1722
BtsI GCAGTG 1 cut(s) 1074
BtsIMutI CAGTG 3 cut(s) 75, 368, 1074
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 3 cut(s) 996, 1463, 2152
CciI TCATGA 1 cut(s) 859
CfoI GCGC 1 cut(s) 2156
Cfr13I GGNCC 3 cut(s) 218, 1816, 1886
CseI GACGC 3 cut(s) 29, 175, 910
CsiI ACCWGGT 1 cut(s) 1882
Csp6I GTAC 4 cut(s) 73, 381, 1039, 1331
CviAII CATG 8 cut(s) 11, 784, 860, 1237, 1277, 1369, 1588, 2058
CviQI GTAC 4 cut(s) 73, 381, 1039, 1331
DdeI CTNAG 7 cut(s) 6, 288, 720, 1075, 1201, 1969, 2094
DpnI GATC 5 cut(s) 175, 491, 713, 1994, 2052
DpnII GATC 5 cut(s) 173, 489, 711, 1992, 2050
DrdI GACNNNNNNGTC 1 cut(s) 26
DseDI GACNNNNNNGTC 1 cut(s) 26
EaeI YGGCCR 2 cut(s) 786, 1003
Eam1104I CTCTTC 4 cut(s) 731, 873, 1248, 1535
EarI CTCTTC 4 cut(s) 731, 873, 1248, 1535
EciI GGCGGA 2 cut(s) 35, 1183
Eco130I CCWWGG 3 cut(s) 230, 752, 1587
Eco147I AGGCCT 1 cut(s) 94
Eco31I GGTCTC 1 cut(s) 1849
Eco47I GGWCC 2 cut(s) 1816, 1886
Eco57I CTGAAG 1 cut(s) 1532
Eco72I CACGTG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 1816
EcoRI GAATTC 1 cut(s) 798
EcoRII CCWGG 3 cut(s) 930, 1882, 1915
EcoT14I CCWWGG 3 cut(s) 230, 752, 1587
EcoT22I ATGCAT 1 cut(s) 785
ErhI CCWWGG 3 cut(s) 230, 752, 1587
Esp3I CGTCTC 1 cut(s) 193
FaeI CATG 8 cut(s) 14, 787, 863, 1240, 1280, 1372, 1591, 2061
FaqI GGGAC 3 cut(s) 183, 602, 1829
FatI CATG 8 cut(s) 10, 783, 859, 1236, 1276, 1368, 1587, 2057
FbaI TGATCA 2 cut(s) 489, 1992
FblI GTMKAC 2 cut(s) 360, 943
Fnu4HI GCNGC 5 cut(s) 523, 789, 1260, 1626, 1696
FokI GGATG 6 cut(s) 291, 521, 792, 1097, 1120, 1729
Fsp4HI GCNGC 5 cut(s) 523, 789, 1260, 1626, 1696
GlaI GCGC 1 cut(s) 2155
GluI GCNGC 5 cut(s) 523, 789, 1260, 1626, 1696
HaeIII GGCC 6 cut(s) 37, 94, 219, 788, 1005, 1664
HapII CCGG 3 cut(s) 179, 970, 1604
HgaI GACGC 3 cut(s) 29, 175, 910
HhaI GCGC 1 cut(s) 2156
Hin1II CATG 8 cut(s) 14, 787, 863, 1240, 1280, 1372, 1591, 2061
Hin6I GCGC 1 cut(s) 2154
HinP1I GCGC 1 cut(s) 2154
HincII GTYRAC 3 cut(s) 1429, 1584, 2063
HindII GTYRAC 3 cut(s) 1429, 1584, 2063
HpaII CCGG 3 cut(s) 179, 970, 1604
HphI GGTGA 5 cut(s) 219, 893, 1015, 1264, 1778
Hpy188III TCNNGA 4 cut(s) 676, 860, 1946, 1971
Hpy99I CGWCG 2 cut(s) 23, 1932
HpyAV CCTTC 6 cut(s) 448, 589, 624, 902, 1427, 1694
HpyCH4III ACNGT 4 cut(s) 197, 707, 1928, 2023
HpyCH4IV ACGT 4 cut(s) 40, 71, 1806, 1934
HpyCH4V TGCA 9 cut(s) 783, 810, 961, 1111, 1146, 1189, 1461, 1753, 1829
HpyF10VI GCNNNNNNNGC 1 cut(s) 1094
HpyF3I CTNAG 7 cut(s) 6, 288, 720, 1075, 1201, 1969, 2094
HpySE526I ACGT 4 cut(s) 40, 71, 1806, 1934
Hsp92II CATG 8 cut(s) 14, 787, 863, 1240, 1280, 1372, 1591, 2061
HspAI GCGC 1 cut(s) 2154
KflI GGGWCCC 1 cut(s) 1816
Ksp22I TGATCA 2 cut(s) 489, 1992
Kzo9I GATC 5 cut(s) 173, 489, 711, 1992, 2050
LguI GCTCTTC 1 cut(s) 1535
LmnI GCTCC 5 cut(s) 1460, 1563, 1842, 2074, 2184
Lsp1109I GCAGC 3 cut(s) 534, 1246, 1612
LweI GCATC 7 cut(s) 154, 307, 770, 1075, 1098, 1740, 2155
MabI ACCWGGT 1 cut(s) 1882
MaeII ACGT 4 cut(s) 40, 71, 1806, 1934
MaeIII GTNAC 5 cut(s) 257, 392, 844, 1299, 1493
MalI GATC 5 cut(s) 175, 491, 713, 1994, 2052
MboI GATC 5 cut(s) 173, 489, 711, 1992, 2050
MflI RGATCY 1 cut(s) 173
MhlI GDGCHC 3 cut(s) 963, 1912, 1923
MlsI TGGCCA 1 cut(s) 1005
MluNI TGGCCA 1 cut(s) 1005
MlyI GAGTC 3 cut(s) 1355, 1434, 1589
MmeI TCCRAC 2 cut(s) 757, 1131
Mox20I TGGCCA 1 cut(s) 1005
Mph1103I ATGCAT 1 cut(s) 785
MroXI GAANNNNTTC 2 cut(s) 827, 882
MscI TGGCCA 1 cut(s) 1005
MseI TTAA 4 cut(s) 335, 669, 1296, 2040
MslI CAYNNNNRTG 4 cut(s) 255, 858, 1106, 1239
Msp20I TGGCCA 1 cut(s) 1005
MspA1I CMGCKG 1 cut(s) 241
MspI CCGG 3 cut(s) 179, 970, 1604
MspR9I CCNGG 4 cut(s) 932, 1605, 1884, 1917
Mva1269I GAATGC 1 cut(s) 430
MvaI CCWGG 3 cut(s) 932, 1884, 1917
MvnI CGCG 1 cut(s) 1698
MwoI GCNNNNNNNGC 1 cut(s) 1094
NciI CCSGG 1 cut(s) 1605
NcoI CCATGG 1 cut(s) 1587
NdeII GATC 5 cut(s) 173, 489, 711, 1992, 2050
NlaIII CATG 8 cut(s) 14, 787, 863, 1240, 1280, 1372, 1591, 2061
NlaIV GGNNCC 6 cut(s) 1593, 1817, 1818, 1844, 2025, 2070
NmeAIII GCCGAG 1 cut(s) 797
NmuCI GTSAC 3 cut(s) 257, 1299, 1493
NsiI ATGCAT 1 cut(s) 785
NspI RCATGY 2 cut(s) 1240, 2061
NspV TTCGAA 1 cut(s) 647
OliI CACNNNNGTG 2 cut(s) 255, 1239
PagI TCATGA 1 cut(s) 859
PceI AGGCCT 1 cut(s) 94
PciI ACATGT 1 cut(s) 2057
PciSI GCTCTTC 1 cut(s) 1535
PcsI WCGNNNNNNNCGW 3 cut(s) 24, 901, 1535
PctI GAATGC 1 cut(s) 430
PdmI GAANNNNTTC 2 cut(s) 827, 882
PfeI GAWTC 8 cut(s) 122, 573, 742, 1171, 1438, 1482, 1704, 2090
Pfl23II CGTACG 1 cut(s) 1330
PflFI GACNNNGTC 1 cut(s) 920
PflMI CCANNNNNTGG 1 cut(s) 1104
PkrI GCNGC 5 cut(s) 524, 790, 1261, 1627, 1697
PleI GAGTC 3 cut(s) 1355, 1433, 1588
PmaCI CACGTG 1 cut(s) 41
PmlI CACGTG 1 cut(s) 41
PpsI GAGTC 3 cut(s) 1355, 1433, 1588
Ppu21I YACGTR 1 cut(s) 41
PpuMI RGGWCCY 1 cut(s) 1816
PscI ACATGT 1 cut(s) 2057
Psp5II RGGWCCY 1 cut(s) 1816
Psp6I CCWGG 3 cut(s) 930, 1882, 1915
PspCI CACGTG 1 cut(s) 41
PspGI CCWGG 3 cut(s) 930, 1882, 1915
PspLI CGTACG 1 cut(s) 1330
PspN4I GGNNCC 6 cut(s) 1593, 1817, 1818, 1844, 2025, 2070
PspPI GGNCC 3 cut(s) 218, 1816, 1886
PspPPI RGGWCCY 1 cut(s) 1816
PsrI GAACNNNNNNTAC 4 cut(s) 1198, 1230, 1924, 1956
PsuI RGATCY 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 920
PvuII CAGCTG 1 cut(s) 241
RsaI GTAC 4 cut(s) 74, 382, 1040, 1332
RsaNI GTAC 4 cut(s) 73, 381, 1039, 1331
RseI CAYNNNNRTG 4 cut(s) 255, 858, 1106, 1239
SapI GCTCTTC 1 cut(s) 1535
SaqAI TTAA 4 cut(s) 335, 669, 1296, 2040
SatI GCNGC 5 cut(s) 523, 789, 1260, 1626, 1696
Sau3AI GATC 5 cut(s) 173, 489, 711, 1992, 2050
Sau96I GGNCC 3 cut(s) 218, 1816, 1886
SchI GAGTC 3 cut(s) 1355, 1434, 1589
ScrFI CCNGG 4 cut(s) 932, 1605, 1884, 1917
SduI GDGCHC 3 cut(s) 963, 1912, 1923
SexAI ACCWGGT 1 cut(s) 1882
SfaNI GCATC 7 cut(s) 154, 307, 770, 1075, 1098, 1740, 2155
SfcI CTRYAG 1 cut(s) 944
SfuI TTCGAA 1 cut(s) 647
SinI GGWCC 2 cut(s) 1816, 1886
SmiMI CAYNNNNRTG 4 cut(s) 255, 858, 1106, 1239
SmlI CTYRAG 1 cut(s) 1946
SmoI CTYRAG 1 cut(s) 1946
SseBI AGGCCT 1 cut(s) 94
SsiI CCGC 5 cut(s) 46, 789, 1168, 1577, 1696
StuI AGGCCT 1 cut(s) 94
StyD4I CCNGG 4 cut(s) 930, 1603, 1882, 1915
StyI CCWWGG 3 cut(s) 230, 752, 1587
TaaI ACNGT 4 cut(s) 197, 707, 1928, 2023
TaiI ACGT 4 cut(s) 43, 74, 1809, 1937
TaqI TCGA 6 cut(s) 141, 647, 802, 1529, 1748, 1930
TaqII GACCGA 1 cut(s) 1873
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 2 cut(s) 791, 1698
TfiI GAWTC 8 cut(s) 122, 573, 742, 1171, 1438, 1482, 1704, 2090
Tru1I TTAA 4 cut(s) 335, 669, 1296, 2040
Tru9I TTAA 4 cut(s) 335, 669, 1296, 2040
TscAI CASTG 3 cut(s) 82, 375, 1074
TseFI GTSAC 3 cut(s) 257, 1299, 1493
TseI GCWGC 3 cut(s) 522, 1259, 1625
Tsp45I GTSAC 3 cut(s) 257, 1299, 1493
TspGWI ACGGA 2 cut(s) 2014, 2197
TspRI CASTG 3 cut(s) 82, 375, 1074
Tth111I GACNNNGTC 1 cut(s) 920
Van91I CCANNNNNTGG 1 cut(s) 1104
VneI GTGCAC 1 cut(s) 959
VpaK11BI GGWCC 2 cut(s) 1816, 1886
XapI RAATTY 7 cut(s) 617, 798, 1305, 1418, 1597, 1724, 2036
XceI RCATGY 2 cut(s) 1240, 2061
XcmI CCANNNNNNNNNTGG 1 cut(s) 1880
XmiI GTMKAC 2 cut(s) 360, 943
XmnI GAANNNNTTC 2 cut(s) 827, 882
Zsp2I ATGCAT 1 cut(s) 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.