Rorug04G0031700

Protein FAR1-RELATED SEQUENCE

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
4618857 .. 4624188
5332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0031700.1

Sequence Viewer

Length: 3918 bp
ATGAATGTTTTGTGTTGGAACTGCCAAGGGATTGGGAACCCTTGGACAGTTACTGGGCTTAAAGGGATAATTTCCCTCAACCTTCCCAAATTAATTTTTCTCAGTGAAACTCTGTGTACGGAGGATGACATCTCGGGGCTAAAGAAGCGGATCGGTTGGAAGAATGCGTTGGTGGATATCAAGGTGTCGCTACAGTCCTTTTCAGAGAATCATATTGATGTGGTTATAGGTGAGGCCGGGGACCCAAAACGGTGGAGGTTTACTGGGGTTTATGGGCACCCTAAGGCGGAGGATCGGATTAGAACGTGGAATCTTTTGCGGCATTTGTGCCTTCAAGGAAATCTTCCATGGGTGGTGGGTGGTGACTATAATGAAATCTGCTCTCGAACGGATAAATTAGGCGGTGCTTTGAGGGATTTCAGACAAATGAATGACATGCAGGAAGCTTTGAATTTTTGTGAGCTGGGGGATATTAATTTTGTTGGTCCTCAGTTCACGTGGAGTGGGATTCGGGGTGGTCAATTGGTGAAAGTTAGACTAGATCGTTTTACGTGTTCGTCTGCATGGAGGGAGTGCTTTCCAGCGTCTAGGGTCCTCCACCTGGACCCAAATTCTTCTGATCATCTCCCCATTCTTCTTGAGGTCAGAGAACAAAAGAAAAAGAGGAAAAAGAGGAAAAAGAGGTTTCGGTTCGAGGAAGCTTGGTTGGTGGAGGACAAGTGTAAGGAGGTGGTGGAGAGATGTTGGGTAAGTACTACTGGAGTGGGTCCCTTTCAAAAGTTATGGAATAGATTAGACAAAACAAGGGAGACGTTGGAGTCTTGGAGTGTAGAAAGTTTTGGGAATATTAAAAAGGACATTGATAAGGTGAAAAGTCAATTAGCTTCCTTTTATGATGGGTCCTTGTCGATGGCTTTTGACTGCAATAAAGCGGTCCTTCAGTCTAAGTTGAATGACTTGTTGCACAAGGAGCATGTCTTCTGGCGTCAGAGGGCGAAGATTTTCTGGTTAAAGGATGGGGACTTAAATACACGGTTTTTTCATCAGCGCGCAAAGAACAGGAAAAAGAAGAATGCTATTACAGGGCTTTTCAATCAGGCTGGGGTTTGGTGCTCAAGGGACGACGAACTGGAAGCTATCGTCCTGGATTATTTTCGGGATATTTTTTCGTCGACACAGCCTGGAGAGTTCTGGAATATTCTAGAAGCAGTAACGGAGGGGGTGATGGAGGACGCTAATTTGGCCCTTACGAAACCTTTTGGGAAGGAGGAGGTGTTGTCTGCACTTAATTGCATGCATCCCTCGAAGGCTCTGGGGCCAGATGGTTTTGCTCCGTGTTTCTATCAGTCGTTTTGGGGGTTGATTGGGGATGACGTGGTAGAGGCGATCAGGGAGTTCTTTGTCTCGGATCGGTGCATGAAGATGGTAAACAGGACCTTTGTGGCTTTAATCCCGAAAGTAGACGTTCCTCAGTCTATGTCACAGCTTCGGCCCATTAGCCTGTGTAACGTGGTGTATAAGATCGGCTCAAAAGTTCTTGCCAACAGATTAAAACCGTTCCTGGATGCATTGATCTCACCGTACCAAAGTGCTTTCGTGCCTGGTCGGCTAATTTCTGATAATTCGTTAATGGCGTTTGAAATTTCACATTGTTTGAAGAGGAGGAGGTGTGGTAAGGTCGGGCTTTGTGCGTTGAAACTTGACATGAGTAAGGCATATGATCGAGTAGAGTGGAAGTTTTTGGAGGCAGTGATGGTGAGGATGGGTTTCGGGCCAGTTTGGGTGAAATGGATCATGAGTTGTGTTTCCACGGTTTCGTATTCTTTTATCATCAATGGGGATCCTAGAGGCTTGGTTATACCGTCAAGGGGCTTACGGCAAGGTGATTCTTTATCCCCATATCTTTTCTTACTGTGTGCCGAGGTCCTCTCTCGTTGTATTTTGCATGCAGAAAGGAGGCAGGTTCTGCAGGGGGTCAAAATCTGTAAGGAGGCTCCTAGCATAAGCCATTTATTTTTTGCGGATGATTCTTTCATTTTTTTCAAGGCTGGGAGGGAGCAATGTGAGGCTCTAAAGGGTATCCTTGTAGACTATGAGAGGGCTTCTGGTCAGCAGGTAAATTACTTAAAGAGTTGTATCTCTTTTAGCAAGAATGTGCACATGCTTATGCAGGAGGGAATTGCAGCGATTTTAGGAGTGAACAGAGTGGAGAAACATGATAAGTATTTGGGGTTGCCTACTGAGCTGAGTTATTCTAAGGAGGAGGCTTTTGGTTTTTTAAATGAAAAAATTAGAAACCGTACCCAAGGATGGAGGGAGAAGACACTAAGCACAGCGGGTAAAGAAATTTTGATTAAAGCAGTTGCACAGGCTATTCCATCTTACGTGATGAGCTGCTTCGAGCTCCCCAAACATCTTTGCTCGGAAATGCATAGATTAATGGCTCAGTTCTGGTGGGGGGATGAGGGGGTTGCAAGGAAGATTCATTGGATGGCTTGGGAGAAGTTGTGTCGACCGAAGAAGGACGGCGGCTTGGGATTTCGAAACATGGTGAATTTTAATCTGGCACTTTTGGCAAAGCAGGGTTGGCGACTTATCCAGAATCCAGATTCCATTGTGGCTAGGCTTCTAAAGGCTAAGTATTTTCCTCACTGTTCCTTCATGCATGCTGAGCTTAAAGGTGGAGAGTCTTATACGTGGAGGAGTATTCTTAAAGGGAGAGCGGTTTTGAAATTGGGGTTGAGGTATCAGGTGGGGAATGGCCAGGATATCTCGGTGTGGGATGACCCGTGGGTTCCACAGCCTTGTCAATTTAGGCCATATTCGCCTAAGTTGGAGGGTACTGAGGAGTTGAGGGTGATGGATTTGATTGATGCTGATACAAATGAATGGGATGTAGAGTTTATGAGGGAGCTTTTCACGGAGGGGGAGGTGGAGAAAATTGCATGCATCCCTCTGAGCTTGCGTGGGAGGGTTGATCGTCTTATATGGCATTATGATAGGAAAGGTCTCTACAGTGTGCGTAGTGGGTACCATGTGCTTAACAATTTCATGTGCAGCAAGGACAAGGCCTCTACGTCTCTGAATGGGTGCGGCAAAGTGGAAGGTAATTATTGGGTGGCTTTGTGGGGGGCCCGGGTGCCTCCAAAGGTGAAATCCTTTGTCTGGAGGTTATTGCATGGTATCTTGCCTACCAAATCTTCTCTAGTGCGTAGGAAGATTAGGGTAGATGCTAGGCTTCACCTAGCGGGTAATGTGGTGGACTGGATAATGGAGATGATGGATTATCTCACGGTGGATCAACGAGATTATTTTTACATGGGGCTTTGGGCAATCTGGACTGAACGTAATAATTTATTGTGGAAGGGGGCTAATTTTCGACCCATGAATTTGGTGCAGTGGACGTTGAGATTGTTGGAGGATTATCAGAAATATCATCCCAAAGCAGGTGAGAGTGGCCTCCTCCTTGGTTGTCTGTCTCTAGCACCTTCCTCCATGATAGCGGAGGAGTATGGCGACCCCGTTCTCGGTGTCGTGAATACTGTGCAGGGCTTGTGGCCTTGTTTCTCAATCTTAGATCGCCCAACGCTTTCAAGATTTTTCTGTGATTCAGTCCGGCGGCCATGGCAAGCACATCTCACTGGTGGTCGTGCGCGTTCCGTTCTCAAGTTGGTCCGTCTAGGCCAAAGAACCAGTGGGCAGCGACATGGAGGGATGTGGCGAAAGGCAAGAGTTTGCGATTGGGTGTATAGAGGGCTGCCGGAGATCGAATCTGGCTCTGGGGTCGGATTTGGGATGCGGGTCGGCATGACTTTTGGGTTCTCGTTCGGGCTTTATGGTGGCTTGGGCCTTGTCCGGTTCTGGTCGCTAGCTTCCTTGGGTGGCTATTATGGAGTCAAAATGCGGCGGCGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

1305

Amino Acids

149.33

Weight (kDa)

9.31

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 68 - 208 2.6e-06 Endonuclease/Exonuclease/phosphatase family
RVT_1 PF00078 484 - 722 5.8e-27 Reverse transcriptase (RNA-dependent DNA polymerase)
zf-RVT PF13966 1037 - 1079 8.9e-06 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 3437
AasI GACNNNNNNGTC 1 cut(s) 817
Acc36I ACCTGC 3 cut(s) 1951, 2104, 3437
Acc65I GGTACC 1 cut(s) 3030
AccB1I GGYRCC 3 cut(s) 276, 3030, 3139
AccBSI CCGCTC 1 cut(s) 2723
AccI GTMKAC 4 cut(s) 1172, 1461, 2088, 2512
AccII CGCG 2 cut(s) 1050, 3655
AclWI GGATC 7 cut(s) 158, 300, 1416, 1799, 1835, 1848, 3306
AcoI YGGCCR 2 cut(s) 2761, 3620
AcsI RAATTY 6 cut(s) 451, 610, 1641, 2346, 2554, 3388
AcuI CTGAAG 1 cut(s) 923
AcvI CACGTG 1 cut(s) 498
AcyI GRCGYC 1 cut(s) 985
AfaI GTAC 6 cut(s) 118, 754, 1583, 2302, 2842, 3032
AfiI CCNNNNNNNGG 7 cut(s) 286, 601, 1868, 2310, 3165, 3446, 3527
AflIII ACRYGT 1 cut(s) 551
AjiI CACGTC 1 cut(s) 1375
AjnI CCWGG 6 cut(s) 600, 1143, 1180, 1560, 1600, 2763
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
Alw21I GWGCWC 3 cut(s) 1115, 2160, 2406
Alw26I GTCTC 5 cut(s) 803, 1408, 3014, 3084, 3483
Alw44I GTGCAC 1 cut(s) 2156
AlwI GGATC 7 cut(s) 158, 300, 1416, 1799, 1835, 1848, 3306
AlwNI CAGNNNCTG 2 cut(s) 53, 1966
Ama87I CYCGRG 2 cut(s) 133, 3135
ApaI GGGCCC 1 cut(s) 3136
ApaLI GTGCAC 1 cut(s) 2156
ApeKI GCWGC 5 cut(s) 2183, 2394, 3057, 3700, 3757
ApoI RAATTY 6 cut(s) 451, 610, 1641, 2346, 2554, 3388
AseI ATTAAT 3 cut(s) 92, 474, 2438
Asp700I GAANNNNTTC 1 cut(s) 1001
Asp718I GGTACC 1 cut(s) 3030
AspLEI GCGC 3 cut(s) 1050, 1052, 3655
AsuC2I CCSGG 3 cut(s) 238, 3136, 3137
AsuII TTCGAA 1 cut(s) 2542
AsuNHI GCTAGC 1 cut(s) 3868
AvaI CYCGRG 2 cut(s) 133, 3135
AxyI CCTNAGG 1 cut(s) 282
BaeGI GKGCMC 3 cut(s) 279, 2160, 3136
BalI TGGCCA 1 cut(s) 2763
BamHI GGATCC 1 cut(s) 1840
BanI GGYRCC 3 cut(s) 276, 3030, 3139
BanII GRGCYC 2 cut(s) 2406, 3136
BbrPI CACGTG 1 cut(s) 498
BbsI GAAGAC 2 cut(s) 970, 2327
Bbv12I GWGCWC 3 cut(s) 1115, 2160, 2406
BbvI GCAGC 5 cut(s) 2195, 2381, 3069, 3712, 3744
BceAI ACGGC 2 cut(s) 1892, 2542
BciT130I CCWGG 6 cut(s) 602, 1145, 1182, 1562, 1602, 2765
BciVI GTATCC 1 cut(s) 2090
BclI TGATCA 1 cut(s) 619
BcnI CCSGG 3 cut(s) 238, 3136, 3137
BcoDI GTCTC 5 cut(s) 803, 1408, 3014, 3084, 3483
BfmI CTRYAG 3 cut(s) 191, 1967, 3013
BfuAI ACCTGC 3 cut(s) 1951, 2104, 3437
BfuI GTATCC 1 cut(s) 2090
BglI GCCNNNNNGGC 1 cut(s) 1606
BlpI GCTNAGC 1 cut(s) 2670
BmcAI AGTACT 1 cut(s) 754
Bme1390I CCNGG 9 cut(s) 238, 602, 1145, 1182, 1562, 1602, 2765, 3136, 3137
BmeT110I CYCGRG 2 cut(s) 133, 3135
BmgBI CACGTC 1 cut(s) 1375
BmrFI CCNGG 9 cut(s) 238, 602, 1145, 1182, 1562, 1602, 2765, 3136, 3137
BmrI ACTGGG 2 cut(s) 63, 273
BmsI GCATC 6 cut(s) 1306, 1555, 2863, 2958, 3220, 3786
BmtI GCTAGC 1 cut(s) 3872
BmuI ACTGGG 2 cut(s) 63, 273
BpiI GAAGAC 2 cut(s) 970, 2327
BplI GAGNNNNNCTC 2 cut(s) 1913, 1945
BpmI CTGGAG 3 cut(s) 780, 1203, 3187
Bpu1102I GCTNAGC 1 cut(s) 2670
Bpu14I TTCGAA 1 cut(s) 2542
BpuEI CTTGAG 3 cut(s) 659, 1099, 3650
BpuMI CCSGG 3 cut(s) 238, 3136, 3137
BsaAI YACGTR 4 cut(s) 498, 552, 2386, 2697
BsaHI GRCGYC 1 cut(s) 985
BsaI GGTCTC 1 cut(s) 3014
BsaWI WCCGGW 1 cut(s) 3855
Bsc4I CCNNNNNNNGG 7 cut(s) 286, 601, 1868, 2310, 3165, 3446, 3527
Bse1I ACTGG 8 cut(s) 58, 268, 763, 1134, 1775, 3269, 3646, 3693
Bse21I CCTNAGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 2066
BseBI CCWGG 6 cut(s) 602, 1145, 1182, 1562, 1602, 2765
BseLI CCNNNNNNNGG 7 cut(s) 286, 601, 1868, 2310, 3165, 3446, 3527
BseMI GCAATG 1 cut(s) 2066
BseMII CTCAG 9 cut(s) 115, 503, 1484, 2232, 2237, 2459, 2661, 2835, 2948
BseNI ACTGG 8 cut(s) 58, 268, 763, 1134, 1775, 3269, 3646, 3693
BsePI GCGCGC 1 cut(s) 1048
BseRI GAGGAG 8 cut(s) 1283, 1675, 1678, 2276, 2716, 2861, 3452, 3521
BseSI GKGCMC 3 cut(s) 279, 2160, 3136
BseXI GCAGC 5 cut(s) 2195, 2381, 3069, 3712, 3744
BseYI CCCAGC 3 cut(s) 463, 1100, 2048
BsgI GTGCAG 4 cut(s) 1266, 3076, 3416, 3566
Bsh1236I CGCG 2 cut(s) 1050, 3655
Bsh1285I CGRYCG 1 cut(s) 2516
BshNI GGYRCC 3 cut(s) 276, 3030, 3139
BsiEI CGRYCG 1 cut(s) 2516
BsiHKAI GWGCWC 3 cut(s) 1115, 2160, 2406
BsiHKCI CYCGRG 2 cut(s) 133, 3135
BsiSI CCGG 5 cut(s) 237, 3136, 3616, 3761, 3856
BslFI GGGAC 4 cut(s) 254, 753, 1034, 1133
BslI CCNNNNNNNGG 7 cut(s) 286, 601, 1868, 2310, 3165, 3446, 3527
BsmAI GTCTC 5 cut(s) 803, 1408, 3014, 3084, 3483
BsmBI CGTCTC 2 cut(s) 803, 3084
BsmFI GGGAC 4 cut(s) 254, 753, 1034, 1133
BsmI GAATGC 2 cut(s) 169, 1078
Bso31I GGTCTC 1 cut(s) 3014
BsoBI CYCGRG 2 cut(s) 133, 3135
Bsp119I TTCGAA 1 cut(s) 2542
Bsp120I GGGCCC 1 cut(s) 3132
Bsp1286I GDGCHC 5 cut(s) 279, 1115, 2160, 2406, 3136
Bsp1720I GCTNAGC 1 cut(s) 2670
Bsp19I CCATGG 2 cut(s) 347, 3623
BspCNI CTCAG 9 cut(s) 114, 502, 1483, 2233, 2238, 2458, 2662, 2836, 2949
BspFNI CGCG 2 cut(s) 1050, 3655
BspHI TCATGA 1 cut(s) 1794
BspMAI CTGCAG 1 cut(s) 1971
BspMI ACCTGC 3 cut(s) 1951, 2104, 3437
BspOI GCTAGC 1 cut(s) 3872
BspPI GGATC 7 cut(s) 158, 300, 1416, 1799, 1835, 1848, 3306
BspT104I TTCGAA 1 cut(s) 2542
BspT107I GGYRCC 3 cut(s) 276, 3030, 3139
BspTNI GGTCTC 1 cut(s) 3014
BsrBI CCGCTC 1 cut(s) 2723
BsrDI GCAATG 1 cut(s) 2066
BsrI ACTGG 8 cut(s) 58, 268, 763, 1134, 1775, 3269, 3646, 3693
BssHII GCGCGC 1 cut(s) 1048
BssNI GRCGYC 1 cut(s) 985
BssT1I CCWWGG 7 cut(s) 25, 41, 347, 2305, 3466, 3623, 3876
Bst2UI CCWGG 6 cut(s) 602, 1145, 1182, 1562, 1602, 2765
Bst6I CTCTTC 1 cut(s) 1652
BstACI GRCGYC 1 cut(s) 985
BstAPI GCANNNNNTGC 1 cut(s) 1966
BstBAI YACGTR 4 cut(s) 498, 552, 2386, 2697
BstBI TTCGAA 1 cut(s) 2542
BstC8I GCNNGC 8 cut(s) 1050, 1295, 1947, 2667, 2947, 2963, 3630, 3870
BstDSI CCRYGG 4 cut(s) 347, 1809, 2789, 3623
BstFNI CGCG 2 cut(s) 1050, 3655
BstHHI GCGC 3 cut(s) 1050, 1052, 3655
BstMAI GTCTC 5 cut(s) 803, 1408, 3014, 3084, 3483
BstMCI CGRYCG 1 cut(s) 2516
BstNI CCWGG 6 cut(s) 602, 1145, 1182, 1562, 1602, 2765
BstNSI RCATGY 7 cut(s) 439, 977, 1297, 1949, 2164, 2669, 2949
BstSCI CCNGG 9 cut(s) 236, 600, 1143, 1180, 1560, 1600, 2763, 3134, 3135
BstSFI CTRYAG 3 cut(s) 191, 1967, 3013
BstSLI GKGCMC 3 cut(s) 279, 2160, 3136
BstUI CGCG 2 cut(s) 1050, 3655
BstV1I GCAGC 5 cut(s) 2195, 2381, 3069, 3712, 3744
BstV2I GAAGAC 2 cut(s) 970, 2327
BstX2I RGATCY 1 cut(s) 1840
BstXI CCANNNNNNTGG 3 cut(s) 32, 252, 3391
BstYI RGATCY 1 cut(s) 1840
Bsu36I CCTNAGG 1 cut(s) 282
BsuI GTATCC 1 cut(s) 2090
BtgI CCRYGG 4 cut(s) 347, 1809, 2789, 3623
BtrI CACGTC 1 cut(s) 1375
BtsI GCAGTG 2 cut(s) 1755, 3404
BtsIMutI CAGTG 7 cut(s) 109, 1755, 2650, 3022, 3404, 3639, 3700
BveI ACCTGC 3 cut(s) 1951, 2104, 3437
Cac8I GCNNGC 8 cut(s) 1050, 1295, 1947, 2667, 2947, 2963, 3630, 3870
CaiI CAGNNNCTG 2 cut(s) 53, 1966
CciI TCATGA 1 cut(s) 1794
CfoI GCGC 3 cut(s) 1050, 1052, 3655
Cfr9I CCCGGG 1 cut(s) 3135
CseI GACGC 3 cut(s) 573, 974, 1241
Csp6I GTAC 6 cut(s) 117, 753, 1582, 2301, 2841, 3031
CviQI GTAC 6 cut(s) 117, 753, 1582, 2301, 2841, 3031
DraI TTTAAA 1 cut(s) 2280
DrdI GACNNNNNNGTC 1 cut(s) 817
DseDI GACNNNNNNGTC 1 cut(s) 817
EaeI YGGCCR 2 cut(s) 2761, 3620
Eam1104I CTCTTC 1 cut(s) 1652
EarI CTCTTC 1 cut(s) 1652
EciI GGCGGA 1 cut(s) 302
Ecl136II GAGCTC 1 cut(s) 2404
Eco130I CCWWGG 7 cut(s) 25, 41, 347, 2305, 3466, 3623, 3876
Eco147I AGGCCT 1 cut(s) 3071
Eco24I GRGCYC 2 cut(s) 2406, 3136
Eco31I GGTCTC 1 cut(s) 3014
Eco32I GATATC 2 cut(s) 178, 2770
Eco53kI GAGCTC 1 cut(s) 2404
Eco57I CTGAAG 1 cut(s) 923
Eco72I CACGTG 1 cut(s) 498
Eco81I CCTNAGG 1 cut(s) 282
Eco88I CYCGRG 2 cut(s) 133, 3135
EcoICRI GAGCTC 1 cut(s) 2404
EcoO109I RGGNCCY 7 cut(s) 241, 592, 767, 900, 1434, 1924, 3132
EcoRII CCWGG 6 cut(s) 600, 1143, 1180, 1560, 1600, 2763
EcoRV GATATC 2 cut(s) 178, 2770
EcoT14I CCWWGG 7 cut(s) 25, 41, 347, 2305, 3466, 3623, 3876
EcoT22I ATGCAT 5 cut(s) 1299, 1570, 2433, 2667, 2951
EcoT38I GRGCYC 2 cut(s) 2406, 3136
ErhI CCWWGG 7 cut(s) 25, 41, 347, 2305, 3466, 3623, 3876
Esp3I CGTCTC 2 cut(s) 803, 3084
FalI AAGNNNNNCTT 4 cut(s) 327, 359, 921, 953
FaqI GGGAC 4 cut(s) 254, 753, 1034, 1133
FauI CCCGC 3 cut(s) 2329, 3241, 3792
FauNDI CATATG 1 cut(s) 1717
FbaI TGATCA 1 cut(s) 619
FblI GTMKAC 4 cut(s) 1172, 1461, 2088, 2512
FriOI GRGCYC 2 cut(s) 2406, 3136
GlaI GCGC 3 cut(s) 1049, 1051, 3654
GsaI CCCAGC 3 cut(s) 467, 1104, 2052
GsuI CTGGAG 3 cut(s) 780, 1203, 3187
HapII CCGG 5 cut(s) 237, 3136, 3616, 3761, 3856
HgaI GACGC 3 cut(s) 573, 974, 1241
HhaI GCGC 3 cut(s) 1050, 1052, 3655
Hin1I GRCGYC 1 cut(s) 985
Hin6I GCGC 3 cut(s) 1048, 1050, 3653
HinP1I GCGC 3 cut(s) 1048, 1050, 3653
HincII GTYRAC 2 cut(s) 1173, 2513
HindII GTYRAC 2 cut(s) 1173, 2513
HindIII AAGCTT 2 cut(s) 444, 699
HpaII CCGG 5 cut(s) 237, 3136, 3616, 3761, 3856
Hpy99I CGWCG 2 cut(s) 1127, 1174
Hsp92I GRCGYC 1 cut(s) 985
HspAI GCGC 3 cut(s) 1048, 1050, 3653
KflI GGGWCCC 2 cut(s) 241, 767
KpnI GGTACC 1 cut(s) 3034
Ksp22I TGATCA 1 cut(s) 619
LmnI GCTCC 6 cut(s) 970, 1336, 1999, 2056, 2409, 2911
Lsp1109I GCAGC 5 cut(s) 2195, 2381, 3069, 3712, 3744
LweI GCATC 6 cut(s) 1306, 1555, 2863, 2958, 3220, 3786
MaeIII GTNAC 5 cut(s) 49, 362, 1210, 1479, 1505
MbiI CCGCTC 1 cut(s) 2723
MfeI CAATTG 1 cut(s) 521
MflI RGATCY 1 cut(s) 1840
MhlI GDGCHC 5 cut(s) 279, 1115, 2160, 2406, 3136
MlsI TGGCCA 1 cut(s) 2763
MluNI TGGCCA 1 cut(s) 2763
MlyI GAGTC 3 cut(s) 827, 2696, 3903
MmeI TCCRAC 5 cut(s) 137, 795, 2814, 3396, 3766
Mox20I TGGCCA 1 cut(s) 2763
Mph1103I ATGCAT 5 cut(s) 1299, 1570, 2433, 2667, 2951
MroXI GAANNNNTTC 1 cut(s) 1001
MscI TGGCCA 1 cut(s) 2763
MslI CAYNNNNRTG 3 cut(s) 216, 1421, 2165
Msp20I TGGCCA 1 cut(s) 2763
MspA1I CMGCKG 1 cut(s) 2336
MspI CCGG 5 cut(s) 237, 3136, 3616, 3761, 3856
MspR9I CCNGG 9 cut(s) 238, 602, 1145, 1182, 1562, 1602, 2765, 3136, 3137
MunI CAATTG 1 cut(s) 521
Mva1269I GAATGC 2 cut(s) 169, 1078
MvaI CCWGG 6 cut(s) 602, 1145, 1182, 1562, 1602, 2765
MvnI CGCG 2 cut(s) 1050, 3655
NciI CCSGG 3 cut(s) 238, 3136, 3137
NcoI CCATGG 2 cut(s) 347, 3623
NdeI CATATG 1 cut(s) 1717
NheI GCTAGC 1 cut(s) 3868
NmeAIII GCCGAG 1 cut(s) 1945
NmuCI GTSAC 2 cut(s) 362, 1479
NsiI ATGCAT 5 cut(s) 1299, 1570, 2433, 2667, 2951
NspI RCATGY 7 cut(s) 439, 977, 1297, 1949, 2164, 2669, 2949
NspV TTCGAA 1 cut(s) 2542
PaeI GCATGC 4 cut(s) 1297, 1949, 2669, 2949
PagI TCATGA 1 cut(s) 1794
PaqCI CACCTGC 1 cut(s) 3437
PauI GCGCGC 1 cut(s) 1048
PceI AGGCCT 1 cut(s) 3071
PcsI WCGNNNNNNNCGW 1 cut(s) 1631
PctI GAATGC 2 cut(s) 169, 1078
PdmI GAANNNNTTC 1 cut(s) 1001
PfoI TCCNGGA 2 cut(s) 1143, 1560
PleI GAGTC 3 cut(s) 826, 2695, 3902
PmaCI CACGTG 1 cut(s) 498
PmlI CACGTG 1 cut(s) 498
PpsI GAGTC 3 cut(s) 826, 2695, 3902
Ppu21I YACGTR 4 cut(s) 498, 552, 2386, 2697
PpuMI RGGWCCY 6 cut(s) 241, 592, 767, 900, 1434, 1924
PshBI ATTAAT 3 cut(s) 92, 474, 2438
Psp124BI GAGCTC 1 cut(s) 2406
Psp5II RGGWCCY 6 cut(s) 241, 592, 767, 900, 1434, 1924
Psp6I CCWGG 6 cut(s) 600, 1143, 1180, 1560, 1600, 2763
PspCI CACGTG 1 cut(s) 498
PspFI CCCAGC 3 cut(s) 463, 1100, 2048
PspGI CCWGG 6 cut(s) 600, 1143, 1180, 1560, 1600, 2763
PspOMI GGGCCC 1 cut(s) 3132
PspPPI RGGWCCY 6 cut(s) 241, 592, 767, 900, 1434, 1924
PstI CTGCAG 1 cut(s) 1971
PstNI CAGNNNCTG 2 cut(s) 53, 1966
PsuI RGATCY 1 cut(s) 1840
PteI GCGCGC 1 cut(s) 1048
RsaI GTAC 6 cut(s) 118, 754, 1583, 2302, 2842, 3032
RsaNI GTAC 6 cut(s) 117, 753, 1582, 2301, 2841, 3031
RseI CAYNNNNRTG 3 cut(s) 216, 1421, 2165
SacI GAGCTC 1 cut(s) 2406
SalI GTCGAC 2 cut(s) 1171, 2511
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 3 cut(s) 827, 2696, 3903
ScrFI CCNGG 9 cut(s) 238, 602, 1145, 1182, 1562, 1602, 2765, 3136, 3137
SduI GDGCHC 5 cut(s) 279, 1115, 2160, 2406, 3136
SfaNI GCATC 6 cut(s) 1306, 1555, 2863, 2958, 3220, 3786
SfcI CTRYAG 3 cut(s) 191, 1967, 3013
SfuI TTCGAA 1 cut(s) 2542
SmaI CCCGGG 1 cut(s) 3137
SmiMI CAYNNNNRTG 3 cut(s) 216, 1421, 2165
SmlI CTYRAG 3 cut(s) 638, 1114, 3665
SmoI CTYRAG 3 cut(s) 638, 1114, 3665
SphI GCATGC 4 cut(s) 1297, 1949, 2669, 2949
SseBI AGGCCT 1 cut(s) 3071
SspI AATATT 2 cut(s) 847, 1198
SstI GAGCTC 1 cut(s) 2406
StuI AGGCCT 1 cut(s) 3071
StyD4I CCNGG 9 cut(s) 236, 600, 1143, 1180, 1560, 1600, 2763, 3134, 3135
StyI CCWWGG 7 cut(s) 25, 41, 347, 2305, 3466, 3623, 3876
TaqII GACCGA 1 cut(s) 2530
TatI WGTACW 1 cut(s) 752
TauI GCSGC 6 cut(s) 322, 2532, 3096, 3622, 3907, 3910
TscAI CASTG 7 cut(s) 109, 1755, 2657, 3022, 3404, 3646, 3700
TseFI GTSAC 2 cut(s) 362, 1479
TseI GCWGC 5 cut(s) 2183, 2394, 3057, 3700, 3757
Tsp45I GTSAC 2 cut(s) 362, 1479
TspGWI ACGGA 7 cut(s) 134, 404, 1229, 1323, 2936, 3649, 3665
TspMI CCCGGG 1 cut(s) 3135
TspRI CASTG 7 cut(s) 109, 1755, 2657, 3022, 3404, 3646, 3700
VneI GTGCAC 1 cut(s) 2156
VspI ATTAAT 3 cut(s) 92, 474, 2438
XapI RAATTY 6 cut(s) 451, 610, 1641, 2346, 2554, 3388
XbaI TCTAGA 1 cut(s) 1201
XceI RCATGY 7 cut(s) 439, 977, 1297, 1949, 2164, 2669, 2949
XcmI CCANNNNNNNNNTGG 1 cut(s) 3692
XmaI CCCGGG 1 cut(s) 3135
XmiI GTMKAC 4 cut(s) 1172, 1461, 2088, 2512
XmnI GAANNNNTTC 1 cut(s) 1001
ZrmI AGTACT 1 cut(s) 754
Zsp2I ATGCAT 5 cut(s) 1299, 1570, 2433, 2667, 2951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.