Rroxscaffold_1G00000400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000074
Physical Location & Seq
Reverse (-)
728699 .. 730309
1611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00000400.1

Sequence Viewer

Length: 1371 bp
ATGCAGGTTAATATGGAGAACAACGAAGCAGGTCTACGCTACATTGACCATCTGTGCCACAGGTTGTTACCATCAGACGAAGAAGTATCTGATGATGATTGCTTATTACGAATTGGGGAAGATAAGGAAGGGTTATTTTGTGATGGAGGAGAGAAAGGGCTTGGTCAAACATCTGAAATTGGTAATGATAAATGTTATATGATGGATGTGGAGACGTTAGAAGGAACAAATGTAGGAGAGTGTGTAGACTTAAATGGCAAGGATTACAGTAATTTGAATATGGATAACATGAAGGATGTTGTGTTTAGCAGCGGCAAAGCAACAATTAAGGTCAAGAAACAGGAAGTGAAAGAAAAGGGGAAGAGTCTGATCCAAGCTGAGAAGAAGAAGATGAAGAGGAATCAATGCCCAAGGGGTAAAAGATATAGCCAAGTTTTCCTTCGTTCCCACCGAGGAGTGAATGACAGCGTCATTGCCCAGGTTGAGGCTCTACAGAAAGCACGAGTGCACATAAGCCAGATATATGAACTCCTTGTTGAGCAAGCAGGTGGGCAACAATTTCTGCAGTTCACCCTCAAAGATTTGTACAATGAACTTGATAAGAGGAAGAAAGTAGCGGGCTTAGATGGGGATGCTCATTCTACCATCACTTGGATGCAAATCAGGGCATTGGAGGAAAAACAATTCTACTGCAAGCATACATTAGATAAAGAGGGAAGGTTGGCAAACTTGTTTTGGCAGGACCGACAATCTATGTTGGACTACAATGCATATGGTGATGTACTAATTATGGATAGTACTTACAAAACCAATATATATGGAAAGCCTCTGGTTGTCTTTGTCTGGTGCAATTGCCACCGAGCCACTGTTGTTTATGGGTTTTCCCTTTTAGGCGATGAGGAGGAGGACACTTATAGTTGGGTATTTCAAAAAATTTTAGCAGCAATGAACCAAAAGCACCCGATATCCGTTTTAACAGATGGGGACGAGGCAATAAAGAATGTTGTGGAAAATTTAATGCCAACAGCCAGACATAGATTATGTGCGTGGCACATTGGGCGAAATATTGGTCAAAATGTGAAGGTTGAGGAAGTGCAGGAGAGCATTGGGAAGTTGATTTATGCTTTTTTAATGGTTCAAGAGTGGGAGGCTGCTTGGCACACACTTGTTCAGACACACGGACTTGCAAACAATGCATGGGTAACTTCTTTGTATAACAAGCGGGAACGGGGATACCTCTCTTGGTGCCCCAAGTTCCTCTTTATATTGATGAATCCTTGGCCAATTAAGGATAGCATCATGTGCATTGATACGGGGATACCTAAACCAATTACCTTAATAGACCTTTTTCTGGAACCCCGAGAACCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

456

Amino Acids

52.31

Weight (kDa)

5.9

Isoelectric Point (pI)

32.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 232 - 344 4.2e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 261 - 354 3.5e-24 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 536
Acc36I ACCTGC 2 cut(s) 20, 536
AccB1I GGYRCC 1 cut(s) 1245
AccB7I CCANNNNNTGG 1 cut(s) 651
AccI GTMKAC 2 cut(s) 34, 246
AciI CCGC 3 cut(s) 312, 617, 1222
AclWI GGATC 1 cut(s) 364
AcoI YGGCCR 1 cut(s) 1280
AcsI RAATTY 2 cut(s) 933, 1012
AfaI GTAC 3 cut(s) 587, 783, 799
AfiI CCNNNNNNNGG 3 cut(s) 484, 651, 1351
AgsI TTSAA 3 cut(s) 277, 929, 1139
AjnI CCWGG 1 cut(s) 477
AjuI GAANNNNNNNTTGG 2 cut(s) 423, 455
AluBI AGCT 1 cut(s) 377
AluI AGCT 1 cut(s) 377
Alw21I GWGCWC 1 cut(s) 510
Alw26I GTCTC 1 cut(s) 206
Alw44I GTGCAC 1 cut(s) 506
AlwI GGATC 1 cut(s) 364
Ama87I CYCGRG 1 cut(s) 1359
AoxI GGCC 1 cut(s) 1280
ApaLI GTGCAC 1 cut(s) 506
ApeKI GCWGC 3 cut(s) 309, 941, 1151
ApoI RAATTY 2 cut(s) 933, 1012
ArsI GACNNNNNNTTYG 2 cut(s) 1054, 1086
AspS9I GGNCC 1 cut(s) 742
AsuHPI GGTGA 2 cut(s) 562, 788
AvaI CYCGRG 1 cut(s) 1359
AvaII GGWCC 1 cut(s) 742
BaeGI GKGCMC 2 cut(s) 510, 1250
BalI TGGCCA 1 cut(s) 1282
BanI GGYRCC 1 cut(s) 1245
BarI GAAGNNNNNNTAC 2 cut(s) 18, 50
BauI CACGAG 1 cut(s) 501
Bbv12I GWGCWC 1 cut(s) 510
BbvI GCAGC 3 cut(s) 321, 953, 1138
BccI CCATC 7 cut(s) 57, 79, 137, 196, 620, 653, 974
BciT130I CCWGG 1 cut(s) 479
BciVI GTATCC 2 cut(s) 1226, 1311
BcoDI GTCTC 1 cut(s) 206
BfaI CTAG 1 cut(s) 1369
BfmI CTRYAG 2 cut(s) 491, 563
BfuAI ACCTGC 2 cut(s) 20, 536
BfuI GTATCC 2 cut(s) 1226, 1311
BisI GCNGC 4 cut(s) 310, 313, 942, 1152
BlsI GCNGC 4 cut(s) 311, 314, 943, 1153
BmcAI AGTACT 1 cut(s) 799
Bme1390I CCNGG 1 cut(s) 479
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 1 cut(s) 1359
BmgT120I GGNCC 1 cut(s) 742
BmiI GGNNCC 2 cut(s) 1247, 1356
BmrFI CCNGG 1 cut(s) 479
BmsI GCATC 3 cut(s) 622, 645, 1305
BsaBI GATNNNNATC 1 cut(s) 659
BsaJI CCNNGG 4 cut(s) 410, 451, 477, 1277
BsaXI ACNNNNNCTCC 2 cut(s) 228, 258
Bsc4I CCNNNNNNNGG 3 cut(s) 484, 651, 1351
Bse3DI GCAATG 2 cut(s) 471, 951
Bse8I GATNNNNATC 1 cut(s) 659
BseBI CCWGG 1 cut(s) 479
BseDI CCNNGG 4 cut(s) 410, 451, 477, 1277
BseGI GGATG 4 cut(s) 211, 301, 637, 660
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 3 cut(s) 484, 651, 1351
BseMI GCAATG 2 cut(s) 471, 951
BseMII CTCAG 1 cut(s) 369
BseRI GAGGAG 4 cut(s) 162, 468, 914, 917
BseSI GKGCMC 2 cut(s) 510, 1250
BseXI GCAGC 3 cut(s) 321, 953, 1138
BsgI GTGCAG 1 cut(s) 1115
BshFI GGCC 1 cut(s) 1282
BshNI GGYRCC 1 cut(s) 1245
BsiHKAI GWGCWC 1 cut(s) 510
BsiHKCI CYCGRG 1 cut(s) 1359
BslFI GGGAC 1 cut(s) 998
BslI CCNNNNNNNGG 3 cut(s) 484, 651, 1351
BsmAI GTCTC 1 cut(s) 206
BsmBI CGTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 998
BsnI GGCC 1 cut(s) 1282
BsoBI CYCGRG 1 cut(s) 1359
Bsp1286I GDGCHC 2 cut(s) 510, 1250
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 1 cut(s) 369
BspACI CCGC 3 cut(s) 312, 617, 1222
BspANI GGCC 1 cut(s) 1282
BspCNI CTCAG 1 cut(s) 370
BspLI GGNNCC 2 cut(s) 1247, 1356
BspMAI CTGCAG 1 cut(s) 567
BspMI ACCTGC 2 cut(s) 20, 536
BspPI GGATC 1 cut(s) 364
BspT107I GGYRCC 1 cut(s) 1245
BsrDI GCAATG 2 cut(s) 471, 951
BsrGI TGTACA 1 cut(s) 585
BssECI CCNNGG 4 cut(s) 410, 451, 477, 1277
BssMI GATC 1 cut(s) 369
BssSI CACGAG 1 cut(s) 501
BssT1I CCWWGG 2 cut(s) 410, 1277
Bst2BI CACGAG 1 cut(s) 501
Bst2UI CCWGG 1 cut(s) 479
Bst4CI ACNGT 2 cut(s) 269, 868
Bst6I CTCTTC 2 cut(s) 356, 389
BstAPI GCANNNNNTGC 2 cut(s) 1193, 1302
BstAUI TGTACA 1 cut(s) 585
BstC8I GCNNGC 3 cut(s) 543, 619, 695
BstDEI CTNAG 2 cut(s) 378, 622
BstF5I GGATG 4 cut(s) 211, 301, 637, 660
BstKTI GATC 1 cut(s) 372
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 1 cut(s) 369
BstMWI GCNNNNNNNGC 3 cut(s) 1057, 1193, 1302
BstNI CCWGG 1 cut(s) 479
BstSCI CCNGG 1 cut(s) 477
BstSFI CTRYAG 2 cut(s) 491, 563
BstSLI GKGCMC 2 cut(s) 510, 1250
BstV1I GCAGC 3 cut(s) 321, 953, 1138
BsuI GTATCC 2 cut(s) 1226, 1311
BsuRI GGCC 1 cut(s) 1282
BtgZI GCGATG 1 cut(s) 909
BtsCI GGATG 4 cut(s) 211, 301, 637, 660
BtsIMutI CAGTG 1 cut(s) 864
BveI ACCTGC 2 cut(s) 20, 536
Cac8I GCNNGC 3 cut(s) 543, 619, 695
Cfr13I GGNCC 1 cut(s) 742
CseI GACGC 1 cut(s) 457
Csp6I GTAC 3 cut(s) 586, 782, 798
CviAII CATG 3 cut(s) 289, 1197, 1300
CviQI GTAC 3 cut(s) 586, 782, 798
DdeI CTNAG 2 cut(s) 378, 622
DpnI GATC 1 cut(s) 371
DpnII GATC 1 cut(s) 369
EaeI YGGCCR 1 cut(s) 1280
Eam1104I CTCTTC 2 cut(s) 356, 389
EarI CTCTTC 2 cut(s) 356, 389
Eco130I CCWWGG 2 cut(s) 410, 1277
Eco32I GATATC 1 cut(s) 966
Eco47I GGWCC 1 cut(s) 742
Eco88I CYCGRG 1 cut(s) 1359
EcoRII CCWGG 1 cut(s) 477
EcoRV GATATC 1 cut(s) 966
EcoT14I CCWWGG 2 cut(s) 410, 1277
EcoT22I ATGCAT 2 cut(s) 772, 1198
ErhI CCWWGG 2 cut(s) 410, 1277
Esp3I CGTCTC 1 cut(s) 206
FaeI CATG 3 cut(s) 292, 1200, 1303
FalI AAGNNNNNCTT 4 cut(s) 423, 455, 1244, 1276
FaqI GGGAC 1 cut(s) 998
FatI CATG 3 cut(s) 288, 1196, 1299
FauI CCCGC 2 cut(s) 610, 1215
FauNDI CATATG 1 cut(s) 772
FblI GTMKAC 2 cut(s) 34, 246
Fnu4HI GCNGC 4 cut(s) 310, 313, 942, 1152
FokI GGATG 4 cut(s) 218, 308, 644, 667
Fsp4HI GCNGC 4 cut(s) 310, 313, 942, 1152
FspBI CTAG 1 cut(s) 1369
GluI GCNGC 4 cut(s) 310, 313, 942, 1152
HaeIII GGCC 1 cut(s) 1282
HgaI GACGC 1 cut(s) 457
Hin1II CATG 3 cut(s) 292, 1200, 1303
HinfI GANTC 3 cut(s) 364, 400, 1273
HphI GGTGA 2 cut(s) 562, 788
Hpy166II GTNNAC 4 cut(s) 35, 247, 508, 570
Hpy188I TCNGA 5 cut(s) 76, 91, 175, 369, 1173
Hpy188III TCNNGA 3 cut(s) 334, 1139, 1352
Hpy8I GTNNAC 4 cut(s) 35, 247, 508, 570
HpyAV CCTTC 6 cut(s) 122, 215, 286, 449, 711, 1075
HpyCH4III ACNGT 2 cut(s) 269, 868
HpyCH4IV ACGT 1 cut(s) 215
HpyF10VI GCNNNNNNNGC 3 cut(s) 1057, 1193, 1302
HpyF3I CTNAG 2 cut(s) 378, 622
HpySE526I ACGT 1 cut(s) 215
Hsp92II CATG 3 cut(s) 292, 1200, 1303
Kzo9I GATC 1 cut(s) 369
Lsp1109I GCAGC 3 cut(s) 321, 953, 1138
LweI GCATC 3 cut(s) 622, 645, 1305
MaeI CTAG 1 cut(s) 1369
MaeII ACGT 1 cut(s) 215
MaeIII GTNAC 2 cut(s) 66, 1201
MalI GATC 1 cut(s) 371
MboI GATC 1 cut(s) 369
MboII GAAGA 8 cut(s) 92, 131, 373, 394, 397, 400, 406, 619
MfeI CAATTG 1 cut(s) 850
MhlI GDGCHC 2 cut(s) 510, 1250
MlsI TGGCCA 1 cut(s) 1282
MluNI TGGCCA 1 cut(s) 1282
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 738
Mox20I TGGCCA 1 cut(s) 1282
Mph1103I ATGCAT 2 cut(s) 772, 1198
MscI TGGCCA 1 cut(s) 1282
MseI TTAA 8 cut(s) 9, 251, 327, 974, 1016, 1130, 1287, 1337
MslI CAYNNNNRTG 1 cut(s) 653
Msp20I TGGCCA 1 cut(s) 1282
MspA1I CMGCKG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 479
MunI CAATTG 1 cut(s) 850
MvaI CCWGG 1 cut(s) 479
MwoI GCNNNNNNNGC 3 cut(s) 1057, 1193, 1302
NdeI CATATG 1 cut(s) 772
NdeII GATC 1 cut(s) 369
NlaIII CATG 3 cut(s) 292, 1200, 1303
NlaIV GGNNCC 2 cut(s) 1247, 1356
NsiI ATGCAT 2 cut(s) 772, 1198
PaqCI CACCTGC 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 448
PfeI GAWTC 2 cut(s) 400, 1273
PflFI GACNNNGTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 651
PkrI GCNGC 4 cut(s) 311, 314, 943, 1153
PleI GAGTC 1 cut(s) 372
PpsI GAGTC 1 cut(s) 372
Psp6I CCWGG 1 cut(s) 477
PspGI CCWGG 1 cut(s) 477
PspN4I GGNNCC 2 cut(s) 1247, 1356
PspPI GGNCC 1 cut(s) 742
PstI CTGCAG 1 cut(s) 567
PsyI GACNNNGTC 1 cut(s) 467
RsaI GTAC 3 cut(s) 587, 783, 799
RsaNI GTAC 3 cut(s) 586, 782, 798
RseI CAYNNNNRTG 1 cut(s) 653
SaqAI TTAA 8 cut(s) 9, 251, 327, 974, 1016, 1130, 1287, 1337
SatI GCNGC 4 cut(s) 310, 313, 942, 1152
Sau3AI GATC 1 cut(s) 369
Sau96I GGNCC 1 cut(s) 742
ScaI AGTACT 1 cut(s) 799
SchI GAGTC 1 cut(s) 373
ScrFI CCNGG 1 cut(s) 479
SduI GDGCHC 2 cut(s) 510, 1250
SfaNI GCATC 3 cut(s) 622, 645, 1305
SfcI CTRYAG 2 cut(s) 491, 563
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 653
SsiI CCGC 3 cut(s) 312, 617, 1222
SspI AATATT 1 cut(s) 1066
SspMI CTAG 1 cut(s) 1369
StyD4I CCNGG 1 cut(s) 477
StyI CCWWGG 2 cut(s) 410, 1277
TaaI ACNGT 2 cut(s) 269, 868
TaiI ACGT 1 cut(s) 218
TaqII GACCGA 1 cut(s) 759
TatI WGTACW 3 cut(s) 585, 781, 797
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 2 cut(s) 400, 1273
Tru1I TTAA 8 cut(s) 9, 251, 327, 974, 1016, 1130, 1287, 1337
Tru9I TTAA 8 cut(s) 9, 251, 327, 974, 1016, 1130, 1287, 1337
TscAI CASTG 1 cut(s) 871
TseI GCWGC 3 cut(s) 309, 941, 1151
TspDTI ATGAA 6 cut(s) 305, 407, 540, 606, 962, 1286
TspGWI ACGGA 2 cut(s) 958, 1194
TspRI CASTG 1 cut(s) 871
Tth111I GACNNNGTC 1 cut(s) 467
Van91I CCANNNNNTGG 1 cut(s) 651
VneI GTGCAC 1 cut(s) 506
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 2 cut(s) 933, 1012
XmiI GTMKAC 2 cut(s) 34, 246
XspI CTAG 1 cut(s) 1369
ZrmI AGTACT 1 cut(s) 799
Zsp2I ATGCAT 2 cut(s) 772, 1198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.