Rh5DG239100

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000074
Physical Location & Seq
Forward (+)
27359351 .. 27361300
1950 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG239100.1

Sequence Viewer

Length: 1950 bp
ATGGACACAGACGAAGGGGGCCTTAGGTACAGTGACCATATTTATCATGAGTGTTTATCATCAGACGATGAATCAGAAGATGAAATTTTGATTCGGTTTGGTAAATGCACTAAGGTAACAGCGCGTACAAAGGAGGCAAATGACAGTATAATACCTGGTGAATCAGGGGAATTGAGGAAATCACCAGGCGTAGTTGAAGAGGAGGAAACATTACCTGAGTGCGCCGTTGAAAGAACAGAATATGTGAACCACACGGGGTCCGCACAGCTGAATGGGAAGCACTTCGAAGACCTCACAATGGATGATATGATGGGGGTATACTTCCCAACTGTAGAAGAGGCAGAAAAGTTCTACTCGCTGTACTCACGAATACTTGGTTTCAGCATAAGGAGGGACAGATTGCAGAAGGAAGGCAATGGTTTGGTGGTAAGGAGGCAGTGGGTCTGTTCAAAACAAGGATTGGCAAGTATCAAGTGCAGGAAGCAAAAAGGTGTGGATAAGAACAAAACTGCAAATAATGAGAAAATTGGCGAGCAGAAAAAATCGAGGAGGAACATAATACCGAGGGGAGTAAGATACACAAGAGTTAACTGCCCGGTTTCATTTAGTGTTCGATATTGCAAAGATAAGGAGCTATACCGCGTGACTAAGTTTGTACAGGAGCACAATCATGACCTTGCAAAGTCCCATGAAGTTCAGTTCTTGCGGTCAAACCGTCGCGTGGAAGACAAAGATGTTGCTCAGGTGGAGTGCCTGCGCCGCGCACAAGTCCACACTAGTAGGGCGTATGAGCAACTGGTAGAGCAAGCCGGGGGACACGACGGTGTTGGCTTCTTGATGAAGGATCTGTACAACAAGATTTATGAGTTGAGGAAAAATGCTGAGATGGATGGAGATGCACAGGCTGCCATCACTTGGATGAACATGAGGGGAATGGAGTCAGAAGAGTTCTGCTGCAGGTACAGTTTAGATGAAGAAGGCAGACTTGCCAATCTGTTTTGGAGGGACTACCAATCATTTTTGGACTACAGCGCATATAGTGATGTGGTCATTATGGACAGCACATACAAGACAAATTTGTACGGAAAGCCTCTTGTTGTATTTGTTGGGTGCAATAATCACAGAGCTACAGTTGTTTTCGGGTTTGCCCTTATACGGGATGAGAGGGAGGATACGTACACATGGGTGTTCGAGAACTTCCTTGAGTCCATGGATTATAAACAACCTTCATCCATCCTAACCGATGGCGATGAGTCAATCAGAAAGGTTGTTGAGCGGGTGATGCCAATAGCTCGGCACAGGTTATGTGCATGGCACATTGGAAGAAACATATCGCAGAATGTGAAGGATGTTGCAGATCAGAAAAGTCTTTCAAAAATGATTTATTCCTCAATGTGTGTCAGTGAATGGGAGGCAGCTTGGCAGTCAATTGTGGTTAGAAATGGGTTGTCGGACAATGCATGGGTTATAAGTTTGTATAACAAACGGGAGAGGTGGGCAGAAGCATTCTTCAGAGGGCACTTCTTCGGTGGAATGTGCAGTACGCAGCGCGTCGAAGGCATGCACGCAAAGCTGAAAAAGGAGATTGGGAGGCACACTAGGTTATGTGAAGTTATGCCAAGAATGGAGAGGACACTTGGCCGCATCCGGAATCGCGTACTGTATGACAACTTCAGGTCTAAAAACGGTGCTCCAGTATATGAGACACACATGAGGGGAATAGAGGAAGACGCATGTAGGCTGTTCACACACGACATCTTTGTTATGATTAAGTCCCAAATCTTGTTTGAGAGGAGGTTTGTTCTGGTGCAGAAAGTACCATTTCCCATTTCTGATACAGTGATGTTCTACCTTGCCCAATATGATAGGCCTGAACGACGGTGGTGTGTTGAGTTCCATTCAGACCCGACAAACCCAACATGGCTGTGCTCCTGCAAACTTTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

649

Amino Acids

75.74

Weight (kDa)

7.51

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 116 - 227 5e-13 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 320 - 432 1.1e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 349 - 442 9.7e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1218, 1469
Acc36I ACCTGC 1 cut(s) 948
AccB7I CCANNNNNTGG 1 cut(s) 915
AccBSI CCGCTC 1 cut(s) 1276
AccI GTMKAC 1 cut(s) 318
AccII CGCG 6 cut(s) 124, 642, 720, 762, 1551, 1656
AccIII TCCGGA 1 cut(s) 1647
AciI CCGC 6 cut(s) 261, 640, 706, 760, 1276, 1642
AclWI GGATC 1 cut(s) 852
AcoI YGGCCR 1 cut(s) 1639
AcsI RAATTY 2 cut(s) 84, 1075
AcuI CTGAAG 2 cut(s) 1495, 1657
AfiI CCNNNNNNNGG 5 cut(s) 298, 721, 915, 1155, 1156
AgsI TTSAA 5 cut(s) 197, 230, 450, 1374, 1946
AhlI ACTAGT 1 cut(s) 776
AjnI CCWGG 2 cut(s) 154, 184
AleI CACNNNNGTG 2 cut(s) 822, 1184
AluBI AGCT 6 cut(s) 268, 634, 1127, 1292, 1418, 1573
AluI AGCT 6 cut(s) 268, 634, 1127, 1292, 1418, 1573
Alw21I GWGCWC 3 cut(s) 666, 1693, 1931
Alw26I GTCTC 1 cut(s) 1697
AlwI GGATC 1 cut(s) 852
Aor13HI TCCGGA 1 cut(s) 1647
AoxI GGCC 3 cut(s) 19, 1639, 1868
ApeKI GCWGC 4 cut(s) 905, 954, 1415, 1546
ApoI RAATTY 2 cut(s) 84, 1075
Asp700I GAANNNNTTC 1 cut(s) 281
AspLEI GCGC 6 cut(s) 124, 224, 759, 764, 1034, 1551
AspS9I GGNCC 2 cut(s) 19, 258
AsuC2I CCSGG 2 cut(s) 596, 811
AsuHPI GGTGA 3 cut(s) 170, 174, 1291
AsuII TTCGAA 1 cut(s) 285
AvaII GGWCC 1 cut(s) 258
AxyI CCTNAGG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 1521
BarI GAAGNNNNNNTAC 4 cut(s) 833, 865, 1655, 1687
BbsI GAAGAC 3 cut(s) 294, 732, 1734
Bbv12I GWGCWC 3 cut(s) 666, 1693, 1931
BbvI GCAGC 4 cut(s) 892, 941, 1427, 1558
BccI CCATC 6 cut(s) 304, 880, 884, 917, 1238, 1241
BceAI ACGGC 1 cut(s) 209
BciT130I CCWGG 2 cut(s) 156, 186
BciVI GTATCC 1 cut(s) 1165
BcnI CCSGG 2 cut(s) 596, 811
BcoDI GTCTC 1 cut(s) 1697
BcuI ACTAGT 1 cut(s) 776
BfaI CTAG 2 cut(s) 777, 1599
BfmI CTRYAG 4 cut(s) 330, 955, 1027, 1128
BfuAI ACCTGC 1 cut(s) 948
BfuI GTATCC 1 cut(s) 1165
BisI GCNGC 6 cut(s) 760, 906, 955, 1416, 1547, 1642
BlsI GCNGC 6 cut(s) 761, 907, 956, 1417, 1548, 1643
Bme1390I CCNGG 4 cut(s) 156, 186, 596, 811
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 2 cut(s) 19, 258
BmiI GGNNCC 2 cut(s) 20, 259
BmrFI CCNGG 4 cut(s) 156, 186, 596, 811
BmsI GCATC 3 cut(s) 886, 1272, 1653
BpiI GAAGAC 3 cut(s) 294, 732, 1734
BpmI CTGGAG 1 cut(s) 1677
Bpu10I CCTNAGC 1 cut(s) 741
Bpu14I TTCGAA 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 1223
BpuMI CCSGG 2 cut(s) 596, 811
BsaAI YACGTR 1 cut(s) 1176
BsaJI CCNNGG 3 cut(s) 563, 810, 1209
BsaWI WCCGGW 1 cut(s) 1647
BsaXI ACNNNNNCTCC 2 cut(s) 1160, 1190
Bsc4I CCNNNNNNNGG 5 cut(s) 298, 721, 915, 1155, 1156
Bse1I ACTGG 2 cut(s) 801, 1694
Bse21I CCTNAGG 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 421
BseAI TCCGGA 1 cut(s) 1647
BseBI CCWGG 2 cut(s) 156, 186
BseDI CCNNGG 3 cut(s) 563, 810, 1209
BseGI GGATG 8 cut(s) 307, 895, 924, 1165, 1229, 1233, 1354, 1644
BseLI CCNNNNNNNGG 5 cut(s) 298, 721, 915, 1155, 1156
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 3 cut(s) 207, 755, 873
BseNI ACTGG 2 cut(s) 801, 1694
BseRI GAGGAG 3 cut(s) 215, 562, 1807
BseSI GKGCMC 1 cut(s) 1521
BseXI GCAGC 4 cut(s) 892, 941, 1427, 1558
BsgI GTGCAG 3 cut(s) 496, 1558, 1829
Bsh1236I CGCG 6 cut(s) 124, 642, 720, 762, 1551, 1656
BshFI GGCC 3 cut(s) 21, 1641, 1870
BsiHKAI GWGCWC 3 cut(s) 666, 1693, 1931
BsiSI CCGG 3 cut(s) 596, 810, 1648
BslFI GGGAC 5 cut(s) 407, 670, 828, 1019, 1759
BslI CCNNNNNNNGG 5 cut(s) 298, 721, 915, 1155, 1156
BsmAI GTCTC 1 cut(s) 1697
BsmFI GGGAC 5 cut(s) 407, 670, 828, 1019, 1759
BsmI GAATGC 1 cut(s) 1505
BsnI GGCC 3 cut(s) 21, 1641, 1870
Bsp119I TTCGAA 1 cut(s) 285
Bsp1286I GDGCHC 4 cut(s) 666, 1521, 1693, 1931
Bsp13I TCCGGA 1 cut(s) 1647
Bsp1407I TGTACA 2 cut(s) 655, 849
Bsp143I GATC 2 cut(s) 844, 1357
Bsp19I CCATGG 1 cut(s) 1209
BspACI CCGC 6 cut(s) 261, 640, 706, 760, 1276, 1642
BspANI GGCC 3 cut(s) 21, 1641, 1870
BspCNI CTCAG 3 cut(s) 208, 754, 874
BspEI TCCGGA 1 cut(s) 1647
BspFNI CGCG 6 cut(s) 124, 642, 720, 762, 1551, 1656
BspHI TCATGA 2 cut(s) 46, 670
BspLI GGNNCC 2 cut(s) 20, 259
BspMAI CTGCAG 1 cut(s) 959
BspMI ACCTGC 1 cut(s) 948
BspPI GGATC 1 cut(s) 852
BspT104I TTCGAA 1 cut(s) 285
BsrBI CCGCTC 1 cut(s) 1276
BsrDI GCAATG 1 cut(s) 421
BsrGI TGTACA 2 cut(s) 655, 849
BsrI ACTGG 2 cut(s) 801, 1694
BssECI CCNNGG 3 cut(s) 563, 810, 1209
BssMI GATC 2 cut(s) 844, 1357
BssNAI GTATAC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 1209
Bst1107I GTATAC 1 cut(s) 319
Bst2UI CCWGG 2 cut(s) 156, 186
Bst6I CTCTTC 3 cut(s) 192, 330, 939
BstAPI GCANNNNNTGC 1 cut(s) 905
BstAUI TGTACA 2 cut(s) 655, 849
BstBAI YACGTR 1 cut(s) 1176
BstBI TTCGAA 1 cut(s) 285
BstC8I GCNNGC 5 cut(s) 533, 755, 807, 1562, 1566
BstDEI CTNAG 6 cut(s) 23, 111, 216, 648, 741, 882
BstDSI CCRYGG 1 cut(s) 1209
BstF5I GGATG 8 cut(s) 307, 895, 924, 1165, 1229, 1233, 1354, 1644
BstFNI CGCG 6 cut(s) 124, 642, 720, 762, 1551, 1656
BstHHI GCGC 6 cut(s) 124, 224, 759, 764, 1034, 1551
BstKTI GATC 2 cut(s) 847, 1360
BstMAI GTCTC 1 cut(s) 1697
BstMBI GATC 2 cut(s) 844, 1357
BstMWI GCNNNNNNNGC 5 cut(s) 759, 905, 1282, 1557, 1570
BstNI CCWGG 2 cut(s) 156, 186
BstNSI RCATGY 2 cut(s) 1564, 1737
BstSCI CCNGG 4 cut(s) 154, 184, 594, 809
BstSFI CTRYAG 4 cut(s) 330, 955, 1027, 1128
BstSLI GKGCMC 1 cut(s) 1521
BstSNI TACGTA 1 cut(s) 1176
BstUI CGCG 6 cut(s) 124, 642, 720, 762, 1551, 1656
BstV1I GCAGC 4 cut(s) 892, 941, 1427, 1558
BstV2I GAAGAC 3 cut(s) 294, 732, 1734
BstX2I RGATCY 1 cut(s) 844
BstYI RGATCY 1 cut(s) 844
BstZ17I GTATAC 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 23
BsuI GTATCC 1 cut(s) 1165
BsuRI GGCC 3 cut(s) 21, 1641, 1870
BtgI CCRYGG 1 cut(s) 1209
BtgZI GCGATG 1 cut(s) 1263
BtsCI GGATG 8 cut(s) 307, 895, 924, 1165, 1229, 1233, 1354, 1644
BtsI GCAGTG 1 cut(s) 443
BtsIMutI CAGTG 4 cut(s) 37, 443, 1408, 1845
BveI ACCTGC 1 cut(s) 948
Cac8I GCNNGC 5 cut(s) 533, 755, 807, 1562, 1566
CciI TCATGA 2 cut(s) 46, 670
CfoI GCGC 6 cut(s) 124, 224, 759, 764, 1034, 1551
Cfr13I GGNCC 2 cut(s) 19, 258
CseI GACGC 2 cut(s) 1540, 1739
CsiI ACCWGGT 1 cut(s) 154
DdeI CTNAG 6 cut(s) 23, 111, 216, 648, 741, 882
DpnI GATC 2 cut(s) 846, 1359
DpnII GATC 2 cut(s) 844, 1357
EaeI YGGCCR 1 cut(s) 1639
Eam1104I CTCTTC 3 cut(s) 192, 330, 939
EarI CTCTTC 3 cut(s) 192, 330, 939
Eco105I TACGTA 1 cut(s) 1176
Eco130I CCWWGG 1 cut(s) 1209
Eco147I AGGCCT 1 cut(s) 1870
Eco47I GGWCC 1 cut(s) 258
Eco57I CTGAAG 2 cut(s) 1495, 1657
Eco81I CCTNAGG 1 cut(s) 23
EcoO109I RGGNCCY 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 154, 184
EcoT14I CCWWGG 1 cut(s) 1209
EcoT22I ATGCAT 1 cut(s) 1462
ErhI CCWWGG 1 cut(s) 1209
FalI AAGNNNNNCTT 3 cut(s) 38, 969, 1001
FaqI GGGAC 5 cut(s) 407, 670, 828, 1019, 1759
FauI CCCGC 1 cut(s) 1269
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 6 cut(s) 760, 906, 955, 1416, 1547, 1642
FokI GGATG 8 cut(s) 314, 902, 931, 1172, 1216, 1220, 1361, 1631
Fsp4HI GCNGC 6 cut(s) 760, 906, 955, 1416, 1547, 1642
FspBI CTAG 2 cut(s) 777, 1599
GlaI GCGC 6 cut(s) 123, 223, 758, 763, 1033, 1550
GluI GCNGC 6 cut(s) 760, 906, 955, 1416, 1547, 1642
GsuI CTGGAG 1 cut(s) 1677
HaeIII GGCC 3 cut(s) 21, 1641, 1870
HapII CCGG 3 cut(s) 596, 810, 1648
HgaI GACGC 2 cut(s) 1540, 1739
HhaI GCGC 6 cut(s) 124, 224, 759, 764, 1034, 1551
Hin6I GCGC 6 cut(s) 122, 222, 757, 762, 1032, 1549
HinP1I GCGC 6 cut(s) 122, 222, 757, 762, 1032, 1549
HincII GTYRAC 1 cut(s) 589
HindII GTYRAC 1 cut(s) 589
HinfI GANTC 7 cut(s) 71, 91, 161, 938, 1205, 1253, 1651
HpaI GTTAAC 1 cut(s) 589
HpaII CCGG 3 cut(s) 596, 810, 1648
HphI GGTGA 3 cut(s) 170, 174, 1291
Hpy166II GTNNAC 6 cut(s) 247, 319, 589, 772, 1179, 1746
Hpy188I TCNGA 9 cut(s) 64, 76, 943, 1262, 1362, 1453, 1514, 1834, 1903
Hpy188III TCNNGA 6 cut(s) 47, 366, 671, 835, 1192, 1648
Hpy8I GTNNAC 6 cut(s) 247, 319, 589, 772, 1179, 1746
Hpy99I CGWCG 4 cut(s) 720, 824, 1556, 1881
HpyAV CCTTC 8 cut(s) 8, 400, 404, 835, 971, 1236, 1339, 1550
HpyCH4IV ACGT 1 cut(s) 1175
HpyF10VI GCNNNNNNNGC 5 cut(s) 759, 905, 1282, 1557, 1570
HpyF3I CTNAG 6 cut(s) 23, 111, 216, 648, 741, 882
HpySE526I ACGT 1 cut(s) 1175
HspAI GCGC 6 cut(s) 122, 222, 757, 762, 1032, 1549
Kpn2I TCCGGA 1 cut(s) 1647
KspAI GTTAAC 1 cut(s) 589
Kzo9I GATC 2 cut(s) 844, 1357
LmnI GCTCC 4 cut(s) 631, 661, 1696, 1934
Lsp1109I GCAGC 4 cut(s) 892, 941, 1427, 1558
LweI GCATC 3 cut(s) 886, 1272, 1653
MabI ACCWGGT 1 cut(s) 154
MaeI CTAG 2 cut(s) 777, 1599
MaeII ACGT 1 cut(s) 1175
MaeIII GTNAC 3 cut(s) 32, 115, 643
MalI GATC 2 cut(s) 846, 1359
MbiI CCGCTC 1 cut(s) 1276
MboI GATC 2 cut(s) 844, 1357
MfeI CAATTG 1 cut(s) 1428
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 4 cut(s) 666, 1521, 1693, 1931
MluCI AATT 5 cut(s) 84, 170, 525, 1075, 1428
MlyI GAGTC 3 cut(s) 947, 1214, 1262
MmeI TCCRAC 1 cut(s) 1431
Mph1103I ATGCAT 1 cut(s) 1462
MroI TCCGGA 1 cut(s) 1647
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 2 cut(s) 588, 1770
MslI CAYNNNNRTG 5 cut(s) 669, 822, 917, 1184, 1924
MspA1I CMGCKG 1 cut(s) 268
MspI CCGG 3 cut(s) 596, 810, 1648
MspR9I CCNGG 4 cut(s) 156, 186, 596, 811
MteI GCGCNGCGC 1 cut(s) 760
MunI CAATTG 1 cut(s) 1428
Mva1269I GAATGC 1 cut(s) 1505
MvaI CCWGG 2 cut(s) 156, 186
MvnI CGCG 6 cut(s) 124, 642, 720, 762, 1551, 1656
MwoI GCNNNNNNNGC 5 cut(s) 759, 905, 1282, 1557, 1570
NciI CCSGG 2 cut(s) 596, 811
NcoI CCATGG 1 cut(s) 1209
NdeII GATC 2 cut(s) 844, 1357
NlaIV GGNNCC 2 cut(s) 20, 259
NmeAIII GCCGAG 1 cut(s) 1273
NmuCI GTSAC 2 cut(s) 32, 643
NsiI ATGCAT 1 cut(s) 1462
NspI RCATGY 2 cut(s) 1564, 1737
NspV TTCGAA 1 cut(s) 285
OliI CACNNNNGTG 2 cut(s) 822, 1184
PaeI GCATGC 1 cut(s) 1564
PagI TCATGA 2 cut(s) 46, 670
PceI AGGCCT 1 cut(s) 1870
PctI GAATGC 1 cut(s) 1505
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 4 cut(s) 71, 91, 161, 1651
PflMI CCANNNNNTGG 1 cut(s) 915
PkrI GCNGC 6 cut(s) 761, 907, 956, 1417, 1548, 1643
PleI GAGTC 3 cut(s) 946, 1213, 1261
PpsI GAGTC 3 cut(s) 946, 1213, 1261
Ppu21I YACGTR 1 cut(s) 1176
PsiI TTATAA 2 cut(s) 1218, 1469
Psp6I CCWGG 2 cut(s) 154, 184
PspGI CCWGG 2 cut(s) 154, 184
PspN4I GGNNCC 2 cut(s) 20, 259
PspPI GGNCC 2 cut(s) 19, 258
PstI CTGCAG 1 cut(s) 959
PsuI RGATCY 1 cut(s) 844
PvuII CAGCTG 1 cut(s) 268
RseI CAYNNNNRTG 5 cut(s) 669, 822, 917, 1184, 1924
SaqAI TTAA 2 cut(s) 588, 1770
SatI GCNGC 6 cut(s) 760, 906, 955, 1416, 1547, 1642
Sau3AI GATC 2 cut(s) 844, 1357
Sau96I GGNCC 2 cut(s) 19, 258
SchI GAGTC 3 cut(s) 947, 1214, 1262
ScrFI CCNGG 4 cut(s) 156, 186, 596, 811
SduI GDGCHC 4 cut(s) 666, 1521, 1693, 1931
SexAI ACCWGGT 1 cut(s) 154
SfaNI GCATC 3 cut(s) 886, 1272, 1653
SfcI CTRYAG 4 cut(s) 330, 955, 1027, 1128
SfuI TTCGAA 1 cut(s) 285
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 5 cut(s) 669, 822, 917, 1184, 1924
SmlI CTYRAG 1 cut(s) 1202
SmoI CTYRAG 1 cut(s) 1202
SnaBI TACGTA 1 cut(s) 1176
SpeI ACTAGT 1 cut(s) 776
SphI GCATGC 1 cut(s) 1564
Sse9I AATT 5 cut(s) 84, 170, 525, 1075, 1428
SseBI AGGCCT 1 cut(s) 1870
SsiI CCGC 6 cut(s) 261, 640, 706, 760, 1276, 1642
SspMI CTAG 2 cut(s) 777, 1599
StuI AGGCCT 1 cut(s) 1870
StyD4I CCNGG 4 cut(s) 154, 184, 594, 809
StyI CCWWGG 1 cut(s) 1209
TaiI ACGT 1 cut(s) 1178
TaqI TCGA 5 cut(s) 285, 545, 613, 1191, 1554
TasI AATT 5 cut(s) 84, 170, 525, 1075, 1428
TatI WGTACW 3 cut(s) 360, 655, 849
TauI GCSGC 2 cut(s) 762, 1644
TfiI GAWTC 4 cut(s) 71, 91, 161, 1651
Tru1I TTAA 2 cut(s) 588, 1770
Tru9I TTAA 2 cut(s) 588, 1770
TscAI CASTG 4 cut(s) 37, 443, 1408, 1845
TseFI GTSAC 2 cut(s) 32, 643
TseI GCWGC 4 cut(s) 905, 954, 1415, 1546
Tsp45I GTSAC 2 cut(s) 32, 643
TspDTI ATGAA 8 cut(s) 84, 96, 591, 705, 854, 935, 987, 1218
TspGWI ACGGA 1 cut(s) 1098
TspRI CASTG 4 cut(s) 37, 443, 1408, 1845
Van91I CCANNNNNTGG 1 cut(s) 915
VpaK11BI GGWCC 1 cut(s) 258
XapI RAATTY 2 cut(s) 84, 1075
XceI RCATGY 2 cut(s) 1564, 1737
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 2 cut(s) 777, 1599
Zsp2I ATGCAT 1 cut(s) 1462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.