Rw5G048530

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000074
Physical Location & Seq
Reverse (-)
84369768 .. 84372422
2655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G048530.1

Sequence Viewer

Length: 2655 bp
ATGGACATCACCGATGAAGATGGGCTTCGATTCAGCGACTTTAACTATCATAGGCAAGTTTTGTCAGACGACGATGAAGATGAACTTGTTGAATTTGAATGCTTTGGTACCCGTTTTGGAGACGTTCCGGGAAGACACACCATGGCCCCAAAATCACCAATTGGGTTGGAAGCAGAAAAAGAGATGAATGGATCTAATCAGTTCAAGAAAGGAGTCCCGGATTTAGGGCCAGATTTTCGAAATGTGGAAATGAATGGGAGAAATTTCAAAGACATCACATTTGAGGATGTTAAACATATTTGGTTTCGAACCATAGATGAAGCAGAGAAGTTCTACAACTATTACTCCCATGTGGCGGGCTTCAGCACAAGGAAAGCCAAAAAGGACAGACACAAAAGCATGACTGTAGTATATCGAAGACAGTGGGTATGTTCTAAAGCTGGACATCATGTCGCGGTACAAAAGAGCTCAGCGTTTCCAACAGATGCAATAAAACAAGCCGCCACTGGTGATAAGAATAAGGAGTCAAGGAACAAATTGCTTCGGGGAAGAAGGTTAACTAGATGTGGCTGCCCTGCCCAGTTCATGATTATGTGGTCTGCTAACCAAACTAAGTACTATGTTTCAAAGTTTGTGACGCAACACAATCATGATCTTGTTATAGCCCCTGAAGTTCATTTCCTTCGCTCCCATCGTAATGTTGAGGAACACGACATTGCACAGGTTGAATCCCTCCTTCAAGCGCAGGTGTCCATAAGTCGAGCTTACGAATTTCTTGTTTTCCAGGCGGGTGGATATCATAACATGCGATTCACTCTTAAGGATTTGTACAACAAGCTTCATGAAAAGAATTATGGTTTTGGTGCGGAGGGTGATGCTGAAAAGGTTGTATCACGGATGAAATCTAAGGGAGAGGGCGACAAAGAATTCTACTTCGAGTACACAGTTGATAAAGACGCAAGGCTTGCAAACATGTTTTGGCGGGACCATCAATCACTTTTGGACTACAAAGCTTACGGGGATGTGTTGGTTGTGGATAGTACGTACAAGACGAACCGGTACAGTAAGCCTATGGTGTTATTTGTCGGGGCAAACAATCATCGAGCGACCGTTGTGTTTGGGATTGCACTTGTAGGGGATGAGAAAGAGGATACTTACGATTGGGTTTTCACTAAGTTCCTCGAGTCAATGCAGGAACAACGACCCTTGTCAGTCATTTCTGACGGGGACGAAGCTATGAAGAATGCGTTGGAGCGCCTAATGCCTCAAACTCGTCACAGATTATGTGCCTGGCACATTGGTAGAAACATCGGGCAGAATCTTAACTCTGAAGAAGTTATGACCGCTATTGGGCAATTGATGTTTGCGTCTCTGACCGTACCAGAATGGGAGTTGGCATGGGAGTCTCTTATTACGAAGAATGGCCTTGAAAATAATGCATGGCTGTCTTCCCTTTATAATAAGCGGGATCGCTGGGCAGAGGCGTTTTTTAGGGGCCACTTTTTTGGAGGTATGTGCAGCACACAGAGATGTGAGGGTATGAATTGTCAGTTTAAAAAGCAGATTTCCAGGTATACAAAGTTGTCTGATGTTATGCCACGGTTGGGGTGGAAACTATGTCGGTTAAGGGATCGTGTATTGCGTGACAACTTCAATGTGAAAAACAGCACCCCTGTGTTTGACACTCACATGAAGGACTTAGAGGAGCAGGCCTGCAAAATATTCACGCACGACATATTTATCATGATTAAGTCTCAAATAAAGTTTGAGGGGAGGTTTGTCGTTCATCAAAGGTTCAAGTTTCCGAATGCGGACTCAATTGTTTTTTATGTGGGTCAATATGACCGAGTACAACGGCGTTGGTGCGTTGAGTTTCGAGGGAATAATGGCAATCCGGAGTGGTTATGCTCATGCAAGATGTTTGAATCTGATGGTATTCCTTGTGCTCACCTGTTCTGTGTTATGAAATATGAGTTGGTTTCACAATTCCCAGAGTCTCTCATTTTCAAGCGATGGACCCGAGCAGTAGGGGAATCAACGTTAGCCCCTCAAATTTCCAACATTTCCAATGATAAGTCTGCCCAGTGTGCACGGTATGCCGCGATCCTAATTGAAGCTGCAGAAGCCTGTTTGAATTACTCAATCACCCCTGAAAGCTTCAACATTGGAATGACTGAACTTCAAACCTTCAAATCTAAATCGTTGCAATACCAGGATGCTGGGAAAACCAACCGACCTCCCCCTACAAACAAGCTGACTGTTGTTAGGGATCCGTTGATGTCACGAACAAAGGGAATGTCGTGCAATACAGCCAGGCGCACCCATAGTGAAGCGAAGAAAAATGTAATTACTTGCGGACAATGTCATCAGATTGGTCACAACAGACGCACCTGCAACAGACATCAACATAGGTTTCAGAACAAAGTTTCCGGCGATGGACACTCTCCATCCATGGACACTCCTGCGGACGTTGGTCACGAATGGGAGCCATTAGTTCCAGACTTTTCTCCACCTGCGAGTGATCACATTTCAAGTCGTTCTCCCACACCAGTACATCAAAACAAGTTGCAGGCAACGACTACCGAACCCCAACCTTCTATATCTATGCAGCTTAATGATTGCATGTGGCCTGCTATGGAGTATCCCCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

884

Amino Acids

101.91

Weight (kDa)

8.51

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 110 - 220 5.7e-15 FAR1 DNA-binding domain
ZSWIM1-3_RNaseH-like PF21056 312 - 425 1.4e-07 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 342 - 435 1.9e-27 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1458
AarI CACCTGC 3 cut(s) 736, 2399, 2521
Acc36I ACCTGC 3 cut(s) 736, 2399, 2521
Acc65I GGTACC 1 cut(s) 107
AccB1I GGYRCC 1 cut(s) 107
AccI GTMKAC 1 cut(s) 1574
AccII CGCG 2 cut(s) 455, 2102
AccIII TCCGGA 1 cut(s) 1894
AclI AACGTT 1 cut(s) 2039
AclWI GGATC 6 cut(s) 199, 1476, 1638, 2098, 2264, 2277
AcsI RAATTY 5 cut(s) 92, 262, 770, 926, 2052
AcuI CTGAAG 3 cut(s) 346, 690, 1350
AfiI CCNNNNNNNGG 4 cut(s) 224, 355, 1350, 1604
AflII CTTAAG 1 cut(s) 818
AflIII ACRYGT 1 cut(s) 972
AgeI ACCGGT 1 cut(s) 1056
AhdI GACNNNNNGTC 1 cut(s) 449
AjnI CCWGG 5 cut(s) 783, 1289, 1568, 2211, 2312
AjuI GAANNNNNNNTTGG 4 cut(s) 1232, 1264, 1958, 1990
AleI CACNNNNGTG 1 cut(s) 1673
AloI GAACNNNNNNTCC 2 cut(s) 2411, 2443
Alw21I GWGCWC 3 cut(s) 470, 1948, 2092
Alw26I GTCTC 5 cut(s) 114, 1374, 1410, 1758, 2001
Alw44I GTGCAC 1 cut(s) 2088
AlwI GGATC 6 cut(s) 199, 1476, 1638, 2098, 2264, 2277
Ama87I CYCGRG 2 cut(s) 1181, 2019
Aor13HI TCCGGA 1 cut(s) 1894
AoxI GGCC 6 cut(s) 144, 227, 1423, 1495, 1710, 2627
ApaLI GTGCAC 1 cut(s) 2088
ApeKI GCWGC 4 cut(s) 570, 1518, 2117, 2608
ApoI RAATTY 5 cut(s) 92, 262, 770, 926, 2052
ArsI GACNNNNNNTTYG 4 cut(s) 263, 295, 2282, 2314
AsiGI ACCGGT 1 cut(s) 1056
Asp718I GGTACC 1 cut(s) 107
AspLEI GCGC 3 cut(s) 745, 1257, 2319
AspS9I GGNCC 5 cut(s) 145, 227, 985, 1495, 2016
AsuC2I CCSGG 2 cut(s) 129, 218
AsuHPI GGTGA 5 cut(s) 147, 521, 884, 1940, 2137
AsuII TTCGAA 2 cut(s) 238, 307
AvaI CYCGRG 2 cut(s) 1181, 2019
AvaII GGWCC 2 cut(s) 985, 2016
BaeGI GKGCMC 1 cut(s) 2092
BamHI GGATCC 1 cut(s) 2269
BanI GGYRCC 1 cut(s) 107
BanII GRGCYC 1 cut(s) 470
BbsI GAAGAC 3 cut(s) 139, 424, 1440
Bbv12I GWGCWC 3 cut(s) 470, 1948, 2092
BbvI GCAGC 4 cut(s) 557, 1530, 2104, 2620
BccI CCATC 7 cut(s) 14, 699, 996, 1925, 2007, 2429, 2455
BceAI ACGGC 1 cut(s) 1871
BciT130I CCWGG 5 cut(s) 785, 1291, 1570, 2213, 2314
BciVI GTATCC 2 cut(s) 1144, 2652
BclI TGATCA 1 cut(s) 2521
BcnI CCSGG 2 cut(s) 129, 218
BcoDI GTCTC 5 cut(s) 114, 1374, 1410, 1758, 2001
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 2 cut(s) 405, 2118
BfoI RGCGCY 1 cut(s) 1258
BfrI CTTAAG 1 cut(s) 818
BfuAI ACCTGC 3 cut(s) 736, 2399, 2521
BfuI GTATCC 2 cut(s) 1144, 2652
BisI GCNGC 6 cut(s) 501, 571, 1519, 2100, 2118, 2609
BlpI GCTNAGC 1 cut(s) 469
BlsI GCNGC 6 cut(s) 502, 572, 1520, 2101, 2119, 2610
BmcAI AGTACT 1 cut(s) 617
Bme1390I CCNGG 7 cut(s) 129, 218, 785, 1291, 1570, 2213, 2314
Bme18I GGWCC 2 cut(s) 985, 2016
BmeRI GACNNNNNGTC 1 cut(s) 449
BmeT110I CYCGRG 2 cut(s) 1181, 2019
BmgT120I GGNCC 5 cut(s) 145, 227, 985, 1495, 2016
BmiI GGNNCC 7 cut(s) 109, 147, 986, 1496, 2018, 2271, 2487
BmrFI CCNGG 7 cut(s) 129, 218, 785, 1291, 1570, 2213, 2314
BmrI ACTGGG 2 cut(s) 574, 2077
BmsI GCATC 3 cut(s) 475, 865, 2206
BmuI ACTGGG 2 cut(s) 574, 2077
BoxI GACNNNNGTC 2 cut(s) 1207, 2472
BpiI GAAGAC 3 cut(s) 139, 424, 1440
Bpu1102I GCTNAGC 1 cut(s) 469
Bpu14I TTCGAA 2 cut(s) 238, 307
BpuMI CCSGG 2 cut(s) 129, 218
BsaAI YACGTR 1 cut(s) 1044
BsaJI CCNNGG 3 cut(s) 141, 1598, 2451
BsaWI WCCGGW 2 cut(s) 1056, 1894
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 4 cut(s) 224, 355, 1350, 1604
Bse118I RCCGGY 1 cut(s) 1056
Bse1I ACTGG 4 cut(s) 511, 580, 2083, 2549
Bse3DI GCAATG 1 cut(s) 714
BseAI TCCGGA 1 cut(s) 1894
BseBI CCWGG 5 cut(s) 785, 1291, 1570, 2213, 2314
BseDI CCNNGG 3 cut(s) 141, 1598, 2451
BseGI GGATG 6 cut(s) 292, 903, 1027, 1144, 2221, 2447
BseLI CCNNNNNNNGG 4 cut(s) 224, 355, 1350, 1604
BseMI GCAATG 1 cut(s) 714
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 4 cut(s) 511, 580, 2083, 2549
BseRI GAGGAG 1 cut(s) 1718
BseSI GKGCMC 1 cut(s) 2092
BseXI GCAGC 4 cut(s) 557, 1530, 2104, 2620
BseYI CCCAGC 2 cut(s) 1473, 2219
BsgI GTGCAG 1 cut(s) 1537
Bsh1236I CGCG 2 cut(s) 455, 2102
Bsh1285I CGRYCG 1 cut(s) 1110
BshFI GGCC 6 cut(s) 146, 229, 1425, 1497, 1712, 2629
BshNI GGYRCC 1 cut(s) 107
BshTI ACCGGT 1 cut(s) 1056
BsiEI CGRYCG 1 cut(s) 1110
BsiHKAI GWGCWC 3 cut(s) 470, 1948, 2092
BsiHKCI CYCGRG 2 cut(s) 1181, 2019
BsiSI CCGG 5 cut(s) 128, 218, 1057, 1895, 2430
BslFI GGGAC 3 cut(s) 200, 998, 1241
BslI CCNNNNNNNGG 4 cut(s) 224, 355, 1350, 1604
BsmAI GTCTC 5 cut(s) 114, 1374, 1410, 1758, 2001
BsmBI CGTCTC 2 cut(s) 114, 1374
BsmFI GGGAC 3 cut(s) 200, 998, 1241
BsmI GAATGC 3 cut(s) 104, 1249, 1813
BsnI GGCC 6 cut(s) 146, 229, 1425, 1497, 1712, 2629
BsoBI CYCGRG 2 cut(s) 1181, 2019
Bsp119I TTCGAA 2 cut(s) 238, 307
Bsp1286I GDGCHC 3 cut(s) 470, 1948, 2092
Bsp13I TCCGGA 1 cut(s) 1894
Bsp1407I TGTACA 1 cut(s) 828
Bsp143I GATC 7 cut(s) 191, 652, 1468, 1630, 2103, 2269, 2521
Bsp1720I GCTNAGC 1 cut(s) 469
Bsp19I CCATGG 2 cut(s) 141, 2451
BspANI GGCC 6 cut(s) 146, 229, 1425, 1497, 1712, 2629
BspCNI CTCAG 1 cut(s) 482
BspEI TCCGGA 1 cut(s) 1894
BspFNI CGCG 2 cut(s) 455, 2102
BspHI TCATGA 4 cut(s) 585, 649, 841, 1743
BspLI GGNNCC 7 cut(s) 109, 147, 986, 1496, 2018, 2271, 2487
BspMAI CTGCAG 1 cut(s) 2122
BspMI ACCTGC 3 cut(s) 736, 2399, 2521
BspPI GGATC 6 cut(s) 199, 1476, 1638, 2098, 2264, 2277
BspT104I TTCGAA 2 cut(s) 238, 307
BspT107I GGYRCC 1 cut(s) 107
BspTI CTTAAG 1 cut(s) 818
BsrDI GCAATG 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 1056
BsrGI TGTACA 1 cut(s) 828
BsrI ACTGG 4 cut(s) 511, 580, 2083, 2549
BssAI RCCGGY 1 cut(s) 1056
BssECI CCNNGG 3 cut(s) 141, 1598, 2451
BssMI GATC 7 cut(s) 191, 652, 1468, 1630, 2103, 2269, 2521
BssNAI GTATAC 1 cut(s) 1575
BssT1I CCWWGG 2 cut(s) 141, 2451
Bst1107I GTATAC 1 cut(s) 1575
Bst2UI CCWGG 5 cut(s) 785, 1291, 1570, 2213, 2314
Bst4CI ACNGT 9 cut(s) 406, 423, 946, 1064, 1111, 1378, 1602, 2094, 2260
BstAFI CTTAAG 1 cut(s) 818
BstAPI GCANNNNNTGC 2 cut(s) 965, 2096
BstAUI TGTACA 1 cut(s) 828
BstBAI YACGTR 1 cut(s) 1044
BstBI TTCGAA 2 cut(s) 238, 307
BstC8I GCNNGC 6 cut(s) 358, 966, 1710, 1714, 2571, 2631
BstDEI CTNAG 5 cut(s) 469, 612, 906, 1173, 1699
BstDSI CCRYGG 3 cut(s) 141, 1598, 2451
BstF5I GGATG 6 cut(s) 292, 903, 1027, 1144, 2221, 2447
BstFNI CGCG 2 cut(s) 455, 2102
BstH2I RGCGCY 1 cut(s) 1258
BstHHI GCGC 3 cut(s) 745, 1257, 2319
BstKTI GATC 7 cut(s) 194, 655, 1471, 1633, 2106, 2272, 2524
BstMAI GTCTC 5 cut(s) 114, 1374, 1410, 1758, 2001
BstMBI GATC 7 cut(s) 191, 652, 1468, 1630, 2103, 2269, 2521
BstMCI CGRYCG 1 cut(s) 1110
BstMWI GCNNNNNNNGC 5 cut(s) 965, 1261, 2087, 2096, 2123
BstNI CCWGG 5 cut(s) 785, 1291, 1570, 2213, 2314
BstNSI RCATGY 3 cut(s) 808, 976, 2626
BstPAI GACNNNNGTC 2 cut(s) 1207, 2472
BstSCI CCNGG 7 cut(s) 127, 216, 783, 1289, 1568, 2211, 2312
BstSFI CTRYAG 2 cut(s) 405, 2118
BstSLI GKGCMC 1 cut(s) 2092
BstSNI TACGTA 1 cut(s) 1044
BstUI CGCG 2 cut(s) 455, 2102
BstV1I GCAGC 4 cut(s) 557, 1530, 2104, 2620
BstV2I GAAGAC 3 cut(s) 139, 424, 1440
BstX2I RGATCY 2 cut(s) 191, 2269
BstXI CCANNNNNNTGG 3 cut(s) 791, 1505, 2219
BstYI RGATCY 2 cut(s) 191, 2269
BstZ17I GTATAC 1 cut(s) 1575
BsuI GTATCC 2 cut(s) 1144, 2652
BsuRI GGCC 6 cut(s) 146, 229, 1425, 1497, 1712, 2629
BtgI CCRYGG 3 cut(s) 141, 1598, 2451
BtgZI GCGATG 2 cut(s) 2026, 2448
BtsCI GGATG 6 cut(s) 292, 903, 1027, 1144, 2221, 2447
BtsIMutI CAGTG 3 cut(s) 428, 504, 2090
BveI ACCTGC 3 cut(s) 736, 2399, 2521
Cac8I GCNNGC 6 cut(s) 358, 966, 1710, 1714, 2571, 2631
CciI TCATGA 4 cut(s) 585, 649, 841, 1743
CfoI GCGC 3 cut(s) 745, 1257, 2319
Cfr10I RCCGGY 1 cut(s) 1056
Cfr13I GGNCC 5 cut(s) 145, 227, 985, 1495, 2016
CseI GACGC 4 cut(s) 646, 965, 1356, 2394
CspAI ACCGGT 1 cut(s) 1056
DdeI CTNAG 5 cut(s) 469, 612, 906, 1173, 1699
DpnI GATC 7 cut(s) 193, 654, 1470, 1632, 2105, 2271, 2523
DpnII GATC 7 cut(s) 191, 652, 1468, 1630, 2103, 2269, 2521
DraI TTTAAA 1 cut(s) 1555
DriI GACNNNNNGTC 1 cut(s) 449
Eam1105I GACNNNNNGTC 1 cut(s) 449
Ecl136II GAGCTC 1 cut(s) 468
Eco105I TACGTA 1 cut(s) 1044
Eco130I CCWWGG 2 cut(s) 141, 2451
Eco147I AGGCCT 1 cut(s) 1712
Eco24I GRGCYC 1 cut(s) 470
Eco32I GATATC 1 cut(s) 797
Eco47I GGWCC 2 cut(s) 985, 2016
Eco53kI GAGCTC 1 cut(s) 468
Eco57I CTGAAG 3 cut(s) 346, 690, 1350
Eco88I CYCGRG 2 cut(s) 1181, 2019
EcoICRI GAGCTC 1 cut(s) 468
EcoRI GAATTC 1 cut(s) 926
EcoRII CCWGG 5 cut(s) 783, 1289, 1568, 2211, 2312
EcoRV GATATC 1 cut(s) 797
EcoT14I CCWWGG 2 cut(s) 141, 2451
EcoT22I ATGCAT 1 cut(s) 1441
EcoT38I GRGCYC 1 cut(s) 470
ErhI CCWWGG 2 cut(s) 141, 2451
Esp3I CGTCTC 2 cut(s) 114, 1374
FalI AAGNNNNNCTT 6 cut(s) 9, 41, 69, 101, 748, 780
FaqI GGGAC 3 cut(s) 200, 998, 1241
FauI CCCGC 4 cut(s) 349, 781, 975, 1458
FbaI TGATCA 1 cut(s) 2521
FblI GTMKAC 1 cut(s) 1574
Fnu4HI GCNGC 6 cut(s) 501, 571, 1519, 2100, 2118, 2609
FokI GGATG 6 cut(s) 299, 910, 1034, 1151, 2228, 2434
FriOI GRGCYC 1 cut(s) 470
Fsp4HI GCNGC 6 cut(s) 501, 571, 1519, 2100, 2118, 2609
FspBI CTAG 1 cut(s) 561
GlaI GCGC 3 cut(s) 744, 1256, 2318
GluI GCNGC 6 cut(s) 501, 571, 1519, 2100, 2118, 2609
GsaI CCCAGC 2 cut(s) 1477, 2223
HaeII RGCGCY 1 cut(s) 1258
HaeIII GGCC 6 cut(s) 146, 229, 1425, 1497, 1712, 2629
HapII CCGG 5 cut(s) 128, 218, 1057, 1895, 2430
HgaI GACGC 4 cut(s) 646, 965, 1356, 2394
HhaI GCGC 3 cut(s) 745, 1257, 2319
Hin6I GCGC 3 cut(s) 743, 1255, 2317
HinP1I GCGC 3 cut(s) 743, 1255, 2317
HincII GTYRAC 1 cut(s) 558
HindII GTYRAC 1 cut(s) 558
HindIII AAGCTT 3 cut(s) 836, 1011, 2155
HpaI GTTAAC 1 cut(s) 558
HpaII CCGG 5 cut(s) 128, 218, 1057, 1895, 2430
HphI GGTGA 5 cut(s) 147, 521, 884, 1940, 2137
Hpy166II GTNNAC 4 cut(s) 558, 942, 1575, 2090
Hpy188I TCNGA 9 cut(s) 67, 1222, 1330, 1374, 1588, 1806, 1930, 2370, 2418
Hpy188III TCNNGA 9 cut(s) 205, 586, 650, 842, 1744, 1895, 2283, 2477, 2498
Hpy8I GTNNAC 4 cut(s) 558, 942, 1575, 2090
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 6 cut(s) 546, 692, 746, 1687, 2197, 2604
HpyCH4III ACNGT 9 cut(s) 406, 423, 946, 1064, 1111, 1378, 1602, 2094, 2260
HpyCH4IV ACGT 4 cut(s) 123, 1043, 2039, 2469
HpyF10VI GCNNNNNNNGC 5 cut(s) 965, 1261, 2087, 2096, 2123
HpyF3I CTNAG 5 cut(s) 469, 612, 906, 1173, 1699
HpySE526I ACGT 4 cut(s) 123, 1043, 2039, 2469
HspAI GCGC 3 cut(s) 743, 1255, 2317
Kpn2I TCCGGA 1 cut(s) 1894
KpnI GGTACC 1 cut(s) 111
Ksp22I TGATCA 1 cut(s) 2521
KspAI GTTAAC 1 cut(s) 558
Kzo9I GATC 7 cut(s) 191, 652, 1468, 1630, 2103, 2269, 2521
LmnI GCTCC 4 cut(s) 692, 1252, 1705, 2485
Lsp1109I GCAGC 4 cut(s) 557, 1530, 2104, 2620
LweI GCATC 3 cut(s) 475, 865, 2206
MaeI CTAG 1 cut(s) 561
MaeII ACGT 4 cut(s) 123, 1043, 2039, 2469
MaeIII GTNAC 6 cut(s) 634, 1274, 1643, 2280, 2375, 2474
MalI GATC 7 cut(s) 193, 654, 1470, 1632, 2105, 2271, 2523
MboI GATC 7 cut(s) 191, 652, 1468, 1630, 2103, 2269, 2521
MfeI CAATTG 3 cut(s) 159, 1355, 1818
MflI RGATCY 2 cut(s) 191, 2269
MhlI GDGCHC 3 cut(s) 470, 1948, 2092
MlyI GAGTC 6 cut(s) 222, 533, 1193, 1412, 1808, 2003
MmeI TCCRAC 4 cut(s) 147, 503, 1230, 2082
Mph1103I ATGCAT 1 cut(s) 1441
MroI TCCGGA 1 cut(s) 1894
MseI TTAA 9 cut(s) 42, 291, 557, 819, 1323, 1554, 1625, 1749, 2613
MslI CAYNNNNRTG 7 cut(s) 590, 648, 696, 1528, 1673, 1688, 2168
MspCI CTTAAG 1 cut(s) 818
MspI CCGG 5 cut(s) 128, 218, 1057, 1895, 2430
MspR9I CCNGG 7 cut(s) 129, 218, 785, 1291, 1570, 2213, 2314
MunI CAATTG 3 cut(s) 159, 1355, 1818
Mva1269I GAATGC 3 cut(s) 104, 1249, 1813
MvaI CCWGG 5 cut(s) 785, 1291, 1570, 2213, 2314
MvnI CGCG 2 cut(s) 455, 2102
MwoI GCNNNNNNNGC 5 cut(s) 965, 1261, 2087, 2096, 2123
NciI CCSGG 2 cut(s) 129, 218
NcoI CCATGG 2 cut(s) 141, 2451
NdeII GATC 7 cut(s) 191, 652, 1468, 1630, 2103, 2269, 2521
NlaIV GGNNCC 7 cut(s) 109, 147, 986, 1496, 2018, 2271, 2487
NmuCI GTSAC 6 cut(s) 634, 1274, 1643, 2280, 2375, 2474
NsiI ATGCAT 1 cut(s) 1441
NspI RCATGY 3 cut(s) 808, 976, 2626
NspV TTCGAA 2 cut(s) 238, 307
OliI CACNNNNGTG 1 cut(s) 1673
PaeR7I CTCGAG 1 cut(s) 1181
PagI TCATGA 4 cut(s) 585, 649, 841, 1743
PaqCI CACCTGC 3 cut(s) 736, 2399, 2521
PceI AGGCCT 1 cut(s) 1712
PciI ACATGT 1 cut(s) 972
PcsI WCGNNNNNNNCGW 4 cut(s) 691, 1049, 1639, 2475
PctI GAATGC 3 cut(s) 104, 1249, 1813
PfeI GAWTC 6 cut(s) 30, 728, 810, 1318, 1925, 2033
PflFI GACNNNGTC 1 cut(s) 2361
PfoI TCCNGGA 2 cut(s) 127, 216
PinAI ACCGGT 1 cut(s) 1056
PkrI GCNGC 6 cut(s) 502, 572, 1520, 2101, 2119, 2610
PleI GAGTC 6 cut(s) 221, 532, 1192, 1411, 1808, 2002
PpsI GAGTC 6 cut(s) 221, 532, 1192, 1411, 1808, 2002
Ppu21I YACGTR 1 cut(s) 1044
PscI ACATGT 1 cut(s) 972
PshAI GACNNNNGTC 2 cut(s) 1207, 2472
PsiI TTATAA 1 cut(s) 1458
Psp124BI GAGCTC 1 cut(s) 470
Psp1406I AACGTT 1 cut(s) 2039
Psp6I CCWGG 5 cut(s) 783, 1289, 1568, 2211, 2312
PspFI CCCAGC 2 cut(s) 1473, 2219
PspGI CCWGG 5 cut(s) 783, 1289, 1568, 2211, 2312
PspN4I GGNNCC 7 cut(s) 109, 147, 986, 1496, 2018, 2271, 2487
PspPI GGNCC 5 cut(s) 145, 227, 985, 1495, 2016
PspXI VCTCGAGB 1 cut(s) 1181
PstI CTGCAG 1 cut(s) 2122
PsuI RGATCY 2 cut(s) 191, 2269
PsyI GACNNNGTC 1 cut(s) 2361
RseI CAYNNNNRTG 7 cut(s) 590, 648, 696, 1528, 1673, 1688, 2168
SacI GAGCTC 1 cut(s) 470
SaqAI TTAA 9 cut(s) 42, 291, 557, 819, 1323, 1554, 1625, 1749, 2613
SatI GCNGC 6 cut(s) 501, 571, 1519, 2100, 2118, 2609
Sau3AI GATC 7 cut(s) 191, 652, 1468, 1630, 2103, 2269, 2521
Sau96I GGNCC 5 cut(s) 145, 227, 985, 1495, 2016
ScaI AGTACT 1 cut(s) 617
SchI GAGTC 6 cut(s) 222, 533, 1193, 1412, 1808, 2003
ScrFI CCNGG 7 cut(s) 129, 218, 785, 1291, 1570, 2213, 2314
SduI GDGCHC 3 cut(s) 470, 1948, 2092
SfaNI GCATC 3 cut(s) 475, 865, 2206
SfcI CTRYAG 2 cut(s) 405, 2118
Sfr274I CTCGAG 1 cut(s) 1181
SfuI TTCGAA 2 cut(s) 238, 307
SinI GGWCC 2 cut(s) 985, 2016
SlaI CTCGAG 1 cut(s) 1181
SmiMI CAYNNNNRTG 7 cut(s) 590, 648, 696, 1528, 1673, 1688, 2168
SmlI CTYRAG 2 cut(s) 818, 1181
SmoI CTYRAG 2 cut(s) 818, 1181
SnaBI TACGTA 1 cut(s) 1044
SseBI AGGCCT 1 cut(s) 1712
SspI AATATT 1 cut(s) 1722
SspMI CTAG 1 cut(s) 561
SstI GAGCTC 1 cut(s) 470
StuI AGGCCT 1 cut(s) 1712
StyD4I CCNGG 7 cut(s) 127, 216, 783, 1289, 1568, 2211, 2312
StyI CCWWGG 2 cut(s) 141, 2451
TaaI ACNGT 9 cut(s) 406, 423, 946, 1064, 1111, 1378, 1602, 2094, 2260
TaiI ACGT 4 cut(s) 126, 1046, 2042, 2472
TaqI TCGA 9 cut(s) 28, 238, 307, 415, 760, 936, 1102, 1182, 1876
TaqII GACCGA 1 cut(s) 1860
TatI WGTACW 5 cut(s) 615, 828, 939, 1849, 2551
TauI GCSGC 2 cut(s) 503, 2102
TfiI GAWTC 6 cut(s) 30, 728, 810, 1318, 1925, 2033
Tru1I TTAA 9 cut(s) 42, 291, 557, 819, 1323, 1554, 1625, 1749, 2613
Tru9I TTAA 9 cut(s) 42, 291, 557, 819, 1323, 1554, 1625, 1749, 2613
TscAI CASTG 3 cut(s) 428, 511, 2090
TseFI GTSAC 6 cut(s) 634, 1274, 1643, 2280, 2375, 2474
TseI GCWGC 4 cut(s) 570, 1518, 2117, 2608
Tsp45I GTSAC 6 cut(s) 634, 1274, 1643, 2280, 2375, 2474
TspGWI ACGGA 2 cut(s) 910, 2262
TspRI CASTG 3 cut(s) 428, 511, 2090
Tth111I GACNNNGTC 1 cut(s) 2361
Vha464I CTTAAG 1 cut(s) 818
VneI GTGCAC 1 cut(s) 2088
VpaK11BI GGWCC 2 cut(s) 985, 2016
XapI RAATTY 5 cut(s) 92, 262, 770, 926, 2052
XceI RCATGY 3 cut(s) 808, 976, 2626
XcmI CCANNNNNNNNNTGG 1 cut(s) 1605
XhoI CTCGAG 1 cut(s) 1181
XmiI GTMKAC 1 cut(s) 1574
XspI CTAG 1 cut(s) 561
ZrmI AGTACT 1 cut(s) 617
Zsp2I ATGCAT 1 cut(s) 1441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.