Rw4G008560

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000074
Physical Location & Seq
Reverse (-)
18798808 .. 18801896
3089 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G008560.1

Sequence Viewer

Length: 2775 bp
ATGGAGGAAGATGAAGTCCAGTTTGAGGAATGCGAAGAATTTCCGCCACACACGCAGGACACTAATGTATCGATGGTTGGTGATAGGCCAAATTGCTTACATTTTAAGGGCAAGCCGTATGAAGATCTTGGGCCTGAAGACATGATAGGTGTGGAGTTTGGATCCGTAAATGAAGTGGACTCGTTCTATTCATTTTATTCACTTGCCATGGGTTTTAGCTTCAGAAGGGAAAAGTTGGACAAAGATGCTGGTATCGTTGTGAGAAGGCAGCTGGTTTGTAGTAAGGAAGGGGTTAGAAAGAAAAAAAGTCGCACGGAAGAGCAGATTTCAAACTCCTATGTTTCTGTTTCACATAACAAAGCCTCGAAATCATCATTTACTCAATCTGTTGGCATTCCTGCGAAGGAAAAAGCGCCGATTGGTGACAGGCCGGAATGTCATGATAATAGTGGAAATGGCAACAAAAGAAAGGGCATCCAGTCTCACAGAATTACAAGAGGAAATTGCCTTGCCCGTATAACTGTCCGTTTATGCAAGCAAACCAATAAGTTCCGAGCGGTTGAATTTATAACAGAACACAATCACGCCCTTACTCCTGTGGAATTGAAATCCTTCCTAAGATCTAATAGACATGTTTCAGACCATGCTTTGGCTCAAGTGACTTCTCTTAGGAAGGTGTCAGTGACCAGTTGCCGTGCATATGAGTTGTTGGTTCATCAAGCAGGCGGACATGAGTTTGTAGGTTTCACACACAAAGATTTGCTTAACAAAGTTGATGACCAACGTAAGGAAATGTATATCGATGGGGATGGCCAAGCTGCTATTAGTTTCATGAATTTGAAGGCTTCAAAGGACCCCGATTTCTACTGCTTGTTTAGTGTTGATGCGGAAGGTCACCTTTGTAATATGTTTTGGAGAGACACAAGGTCAATGCTTGATTACAATAGTTTCGGTGATGTGCTTATCCTAGATAGCACATACAAGACCAATATCTATGGCAAGCCGTTGGCTGTTTTTGTTGGTGTGAACAACCACAGGGCGACAGTTTTATTTGGTTGTGCATTGCTTGTTGATGAGACGGAGGACACTTACAATTGGGTCCTAACAGCATTGTTAGATTCAATGAAAGGCAAAAGACCTGCATCTGTAATCACCGACGGGGACGAGGCGATGCGAAATGCAGTTAACCACCTCATTCCTGAAGCCCGTCACCGATTATGTGCATGGCACATTGCAAAGAATGTTGTTAAGAATGTTGGGAATGTTGACGTTCAGAGAGACATTTGTCACCTAATTTTTGCTGGACTTAGCGTGGAAGATTGGGAAAGATCATGGCATTACATGGTGGCAGTACACGGCCTACAAGAGAACCGTTGGGTCTCCTCAATGTACAGTAAGCGGGACAGATGGGCGGAGGCATATTTTAGGAGCAACTTTTTTGGTGGTATATGCACCACCCAAAGATGTGAGGGCATGCATCGAAACCTCAAATCGGGTGTTGGCAAGTTCATGAGACTATGTGAGTTTTTGCCTAGGATGGACAAGACTGTTGAACGGATGAGGTACAATAATTTGTATGATGATTTCAAATCAATGAACTCTGATCCTCTTATTGGTAGCCATATGCGGTGTCTTCAACAGCAGGTTGGCGCCAAGTTCACACATGACATTTTCCTCCTCATCAAGGACCAGATAATGTTTGAGTCACAGTTTGTTGTCGCGGATCAGTTGCACTATGAGAATGGATCATCTACCTTATTTGTGGTCACTCAATACGGGAAACCGGAGAGAACATGGCATGTTACCTACCTACACAGTCCGGCGTGCATTTCCTTTAAGTGTTCATGTCAACTTTTTGAGTCTGATGGAATACCTTGCTGCCACATGTTCACGGTCATGAAAACCAAATTGCTTACGACCTTTCCGGAGTCTTTGGTGTCCCATAGGTGGACAAAGGAGGCATCTCCGAAGAAGCCCCATTTCATAAGCAGAAGCGGTACTGTTTCTGCTGTTGATATCCAGCTTGCAAGATATGCACAGATGATGTCTGATTGTTCACACATATGTCATTCGGCCTCCTTTTCTGATGATGCTTATGACGAAACTTGTGAAGCCTTTAGTAGGTTGATGGTTAGATCAAAAAATTGGCAAGGTCCTCATCACGTCGCAAGTGTTACTATTGATGGTCTCCATCCAAATGTCATTCGCGATCCGGAACCTTGTCGTACAAAAGGGACTCAAACGAGGCCAGCTACCATTCCTACTGACCGGGAGCAGCCATCTGCTAGGGTCTGTGGATTTTGTACTAGACCCGGTCACAACGTCAGGACATGCCCTCTCAGAAAAGGGGCTGAGGTCAATACTGATGCTGATAACAGATCGAATCCAGCTGCTGCTTCGAACACACAAGGTTTACACGATAGGGGAGGTCAGAGTTCGGTATTTCCTGACCGAGTCTCCACTGGATCATTTAGTGTACGCCACACAATATCTGCTTTCCCAAGTAATCGTGAAGGATTCCCATCGAACTTTCATAATGATGAGGAGTCGGCCTACCCCACTCAGTCAAGCTTCCAACATATGATCCATCATGTTGAAGAGGCAAGGACATATGATTTCTTTACAGGGCATGATAACATATTGTCTTCTGTATTCGGTGGGAATGGAAACCATAATCCAGCCGATCCATCTATCTCTTCTAACCAACCAGGTCCGGCAATAAATAATGGGGTCCAAGCCCATTTGGTCATCAATGGTTTGATTGAGGCACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

924

Amino Acids

104.19

Weight (kDa)

7.02

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAR1 PF03101 61 - 112 7.9e-07 FAR1 DNA-binding domain
MULE PF10551 320 - 414 1.2e-27 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 569
Acc36I ACCTGC 2 cut(s) 1147, 1633
AccB1I GGYRCC 2 cut(s) 1649, 2767
AccB7I CCANNNNNTGG 1 cut(s) 649
AccBSI CCGCTC 1 cut(s) 557
AccII CGCG 2 cut(s) 1721, 2208
AccIII TCCGGA 2 cut(s) 1924, 2212
AciI CCGC 9 cut(s) 44, 557, 726, 887, 1399, 1412, 1627, 1721, 1995
AclWI GGATC 9 cut(s) 156, 169, 1598, 1731, 1753, 2204, 2473, 2578, 2678
AcoI YGGCCR 1 cut(s) 811
AcsI RAATTY 3 cut(s) 38, 563, 835
AcuI CTGAAG 3 cut(s) 156, 205, 1221
AcyI GRCGYC 1 cut(s) 1650
AfaI GTAC 7 cut(s) 1353, 1391, 1565, 1999, 2227, 2305, 2478
AfiI CCNNNNNNNGG 8 cut(s) 25, 649, 787, 1492, 1613, 1684, 1947, 2121
AflIII ACRYGT 2 cut(s) 631, 1884
AhdI GACNNNNNGTC 1 cut(s) 925
AjiI CACGTC 1 cut(s) 2164
AjnI CCWGG 1 cut(s) 2707
AluBI AGCT 7 cut(s) 219, 271, 818, 2023, 2252, 2390, 2571
AluI AGCT 7 cut(s) 219, 271, 818, 2023, 2252, 2390, 2571
Alw26I GTCTC 8 cut(s) 486, 912, 1070, 1272, 1384, 1507, 2192, 2461
AlwI GGATC 9 cut(s) 156, 169, 1598, 1731, 1753, 2204, 2473, 2578, 2678
AlwNI CAGNNNCTG 1 cut(s) 2393
Aor13HI TCCGGA 2 cut(s) 1924, 2212
AoxI GGCC 8 cut(s) 86, 131, 428, 811, 1357, 2073, 2246, 2550
ApeKI GCWGC 6 cut(s) 268, 818, 1878, 2275, 2390, 2393
ApoI RAATTY 3 cut(s) 38, 563, 835
Asp700I GAANNNNTTC 2 cut(s) 39, 611
AspA2I CCTAGG 1 cut(s) 1532
AspLEI GCGC 2 cut(s) 415, 1652
AspS9I GGNCC 7 cut(s) 131, 853, 1099, 1687, 2153, 2711, 2731
AsuC2I CCSGG 2 cut(s) 2270, 2313
AsuHPI GGTGA 7 cut(s) 92, 434, 887, 965, 1144, 1202, 1280
AsuII TTCGAA 1 cut(s) 2399
AvaII GGWCC 6 cut(s) 853, 1099, 1687, 2153, 2711, 2731
AvrII CCTAGG 1 cut(s) 1532
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BalI TGGCCA 1 cut(s) 813
BamHI GGATCC 1 cut(s) 161
BanI GGYRCC 2 cut(s) 1649, 2767
BbsI GAAGAC 3 cut(s) 144, 1625, 2637
BbvCI CCTCAGC 1 cut(s) 2352
BbvI GCAGC 6 cut(s) 280, 805, 1865, 2287, 2377, 2380
BceAI ACGGC 4 cut(s) 100, 678, 988, 1372
BciT130I CCWGG 1 cut(s) 2709
BcnI CCSGG 2 cut(s) 2270, 2313
BcoDI GTCTC 8 cut(s) 486, 912, 1070, 1272, 1384, 1507, 2192, 2461
BfaI CTAG 4 cut(s) 968, 1533, 2286, 2307
BfoI RGCGCY 2 cut(s) 416, 1653
BfuAI ACCTGC 2 cut(s) 1147, 1633
BglII AGATCT 2 cut(s) 124, 620
BisI GCNGC 6 cut(s) 269, 819, 1879, 2276, 2391, 2394
BlnI CCTAGG 1 cut(s) 1532
BlsI GCNGC 6 cut(s) 270, 820, 1880, 2277, 2392, 2395
Bme1390I CCNGG 3 cut(s) 2270, 2313, 2709
Bme18I GGWCC 6 cut(s) 853, 1099, 1687, 2153, 2711, 2731
BmeRI GACNNNNNGTC 1 cut(s) 925
BmgBI CACGTC 1 cut(s) 2164
BmgT120I GGNCC 7 cut(s) 131, 853, 1099, 1687, 2153, 2711, 2731
BmiI GGNNCC 7 cut(s) 163, 855, 1100, 1651, 2217, 2732, 2769
BmrFI CCNGG 3 cut(s) 2270, 2313, 2709
BmsI GCATC 9 cut(s) 235, 483, 874, 1151, 1161, 1486, 1970, 2080, 2356
BoxI GACNNNNGTC 1 cut(s) 1284
BpiI GAAGAC 3 cut(s) 144, 1625, 2637
Bpu10I CCTNAGC 1 cut(s) 2352
Bpu14I TTCGAA 1 cut(s) 2399
BpuEI CTTGAG 1 cut(s) 639
BpuMI CCSGG 2 cut(s) 2270, 2313
Bsa29I ATCGAT 2 cut(s) 71, 801
BsaBI GATNNNNATC 1 cut(s) 2521
BsaHI GRCGYC 1 cut(s) 1650
BsaI GGTCTC 2 cut(s) 1384, 2192
BsaJI CCNNGG 2 cut(s) 207, 1532
BsaWI WCCGGW 3 cut(s) 1783, 1924, 2212
BsaXI ACNNNNNCTCC 2 cut(s) 2441, 2471
Bsc4I CCNNNNNNNGG 8 cut(s) 25, 649, 787, 1492, 1613, 1684, 1947, 2121
Bse1I ACTGG 4 cut(s) 19, 478, 687, 2467
Bse3DI GCAATG 2 cut(s) 1061, 1230
Bse8I GATNNNNATC 1 cut(s) 2521
BseAI TCCGGA 2 cut(s) 1924, 2212
BseBI CCWGG 1 cut(s) 2709
BseCI ATCGAT 2 cut(s) 71, 801
BseDI CCNNGG 2 cut(s) 207, 1532
BseGI GGATG 5 cut(s) 474, 814, 1542, 1563, 2191
BseJI GATNNNNATC 1 cut(s) 2521
BseLI CCNNNNNNNGG 8 cut(s) 25, 649, 787, 1492, 1613, 1684, 1947, 2121
BseMI GCAATG 2 cut(s) 1061, 1230
BseMII CTCAG 3 cut(s) 2343, 2353, 2576
BseNI ACTGG 4 cut(s) 19, 478, 687, 2467
BseRI GAGGAG 3 cut(s) 1372, 1667, 2558
BseXI GCAGC 6 cut(s) 280, 805, 1865, 2287, 2377, 2380
Bsh1236I CGCG 2 cut(s) 1721, 2208
BshFI GGCC 8 cut(s) 88, 133, 430, 813, 1359, 2075, 2248, 2552
BshNI GGYRCC 2 cut(s) 1649, 2767
BshVI ATCGAT 2 cut(s) 71, 801
BsiSI CCGG 8 cut(s) 431, 1784, 1820, 1925, 2213, 2269, 2313, 2714
BslFI GGGAC 4 cut(s) 1175, 1415, 1924, 2248
BslI CCNNNNNNNGG 8 cut(s) 25, 649, 787, 1492, 1613, 1684, 1947, 2121
BsmAI GTCTC 8 cut(s) 486, 912, 1070, 1272, 1384, 1507, 2192, 2461
BsmBI CGTCTC 1 cut(s) 1070
BsmFI GGGAC 4 cut(s) 1175, 1415, 1924, 2248
BsmI GAATGC 2 cut(s) 35, 393
BsnI GGCC 8 cut(s) 88, 133, 430, 813, 1359, 2075, 2248, 2552
Bso31I GGTCTC 2 cut(s) 1384, 2192
Bsp119I TTCGAA 1 cut(s) 2399
Bsp13I TCCGGA 2 cut(s) 1924, 2212
Bsp1407I TGTACA 1 cut(s) 1389
Bsp19I CCATGG 1 cut(s) 207
Bsp68I TCGCGA 1 cut(s) 2208
BspACI CCGC 9 cut(s) 44, 557, 726, 887, 1399, 1412, 1627, 1721, 1995
BspANI GGCC 8 cut(s) 88, 133, 430, 813, 1359, 2075, 2248, 2552
BspCNI CTCAG 3 cut(s) 2344, 2352, 2575
BspDI ATCGAT 2 cut(s) 71, 801
BspEI TCCGGA 2 cut(s) 1924, 2212
BspFNI CGCG 2 cut(s) 1721, 2208
BspHI TCATGA 4 cut(s) 439, 831, 1509, 1896
BspLI GGNNCC 7 cut(s) 163, 855, 1100, 1651, 2217, 2732, 2769
BspMI ACCTGC 2 cut(s) 1147, 1633
BspPI GGATC 9 cut(s) 156, 169, 1598, 1731, 1753, 2204, 2473, 2578, 2678
BspQI GCTCTTC 1 cut(s) 312
BspT104I TTCGAA 1 cut(s) 2399
BspT107I GGYRCC 2 cut(s) 1649, 2767
BspTNI GGTCTC 2 cut(s) 1384, 2192
BsrBI CCGCTC 1 cut(s) 557
BsrDI GCAATG 2 cut(s) 1061, 1230
BsrGI TGTACA 1 cut(s) 1389
BsrI ACTGG 4 cut(s) 19, 478, 687, 2467
BssECI CCNNGG 2 cut(s) 207, 1532
BssNI GRCGYC 1 cut(s) 1650
BssT1I CCWWGG 2 cut(s) 207, 1532
Bst2UI CCWGG 1 cut(s) 2709
Bst4CI ACNGT 9 cut(s) 523, 1045, 1373, 1394, 1549, 1710, 1817, 1894, 2002
Bst6I CTCTTC 3 cut(s) 312, 2592, 2701
BstACI GRCGYC 1 cut(s) 1650
BstAPI GCANNNNNTGC 1 cut(s) 2033
BstAUI TGTACA 1 cut(s) 1389
BstBI TTCGAA 1 cut(s) 2399
BstC8I GCNNGC 8 cut(s) 113, 536, 724, 1001, 1475, 1825, 2025, 2250
BstDEI CTNAG 6 cut(s) 617, 668, 1307, 2339, 2352, 2562
BstDSI CCRYGG 1 cut(s) 207
BstEII GGTNACC 1 cut(s) 893
BstENI CCTNNNNNAGG 2 cut(s) 1682, 2119
BstF5I GGATG 5 cut(s) 474, 814, 1542, 1563, 2191
BstFNI CGCG 2 cut(s) 1721, 2208
BstH2I RGCGCY 2 cut(s) 416, 1653
BstHHI GCGC 2 cut(s) 415, 1652
BstMAI GTCTC 8 cut(s) 486, 912, 1070, 1272, 1384, 1507, 2192, 2461
BstMWI GCNNNNNNNGC 2 cut(s) 52, 2033
BstNI CCWGG 1 cut(s) 2709
BstNSI RCATGY 5 cut(s) 635, 1477, 1802, 1888, 2334
BstPAI GACNNNNGTC 1 cut(s) 1284
BstPI GGTNACC 1 cut(s) 893
BstSCI CCNGG 3 cut(s) 2268, 2311, 2707
BstUI CGCG 2 cut(s) 1721, 2208
BstV1I GCAGC 6 cut(s) 280, 805, 1865, 2287, 2377, 2380
BstV2I GAAGAC 3 cut(s) 144, 1625, 2637
BstX2I RGATCY 3 cut(s) 124, 161, 620
BstYI RGATCY 3 cut(s) 124, 161, 620
Bsu15I ATCGAT 2 cut(s) 71, 801
BsuRI GGCC 8 cut(s) 88, 133, 430, 813, 1359, 2075, 2248, 2552
BsuTUI ATCGAT 2 cut(s) 71, 801
BtgI CCRYGG 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 1184
BtrI CACGTC 1 cut(s) 2164
BtsCI GGATG 5 cut(s) 474, 814, 1542, 1563, 2191
BtsIMutI CAGTG 2 cut(s) 687, 2460
BtuMI TCGCGA 1 cut(s) 2208
BveI ACCTGC 2 cut(s) 1147, 1633
Cac8I GCNNGC 8 cut(s) 113, 536, 724, 1001, 1475, 1825, 2025, 2250
CaiI CAGNNNCTG 1 cut(s) 2393
CciI TCATGA 4 cut(s) 439, 831, 1509, 1896
CfoI GCGC 2 cut(s) 415, 1652
Cfr13I GGNCC 7 cut(s) 131, 853, 1099, 1687, 2153, 2711, 2731
ClaI ATCGAT 2 cut(s) 71, 801
CsiI ACCWGGT 1 cut(s) 2707
Csp6I GTAC 7 cut(s) 1352, 1390, 1564, 1998, 2226, 2304, 2477
CviQI GTAC 7 cut(s) 1352, 1390, 1564, 1998, 2226, 2304, 2477
DdeI CTNAG 6 cut(s) 617, 668, 1307, 2339, 2352, 2562
DinI GGCGCC 1 cut(s) 1651
DriI GACNNNNNGTC 1 cut(s) 925
EaeI YGGCCR 1 cut(s) 811
Eam1104I CTCTTC 3 cut(s) 312, 2592, 2701
Eam1105I GACNNNNNGTC 1 cut(s) 925
EarI CTCTTC 3 cut(s) 312, 2592, 2701
EciI GGCGGA 3 cut(s) 33, 741, 1427
Eco130I CCWWGG 2 cut(s) 207, 1532
Eco31I GGTCTC 2 cut(s) 1384, 2192
Eco32I GATATC 1 cut(s) 2017
Eco47I GGWCC 6 cut(s) 853, 1099, 1687, 2153, 2711, 2731
Eco57I CTGAAG 3 cut(s) 156, 205, 1221
Eco91I GGTNACC 1 cut(s) 893
EcoNI CCTNNNNNAGG 2 cut(s) 1682, 2119
EcoO109I RGGNCCY 3 cut(s) 853, 1099, 2153
EcoO65I GGTNACC 1 cut(s) 893
EcoRII CCWGG 1 cut(s) 2707
EcoRV GATATC 1 cut(s) 2017
EcoT14I CCWWGG 2 cut(s) 207, 1532
EcoT22I ATGCAT 1 cut(s) 1479
EgeI GGCGCC 1 cut(s) 1651
EheI GGCGCC 1 cut(s) 1651
ErhI CCWWGG 2 cut(s) 207, 1532
Esp3I CGTCTC 1 cut(s) 1070
FalI AAGNNNNNCTT 4 cut(s) 747, 779, 882, 914
FaqI GGGAC 4 cut(s) 1175, 1415, 1924, 2248
FauI CCCGC 1 cut(s) 1392
FauNDI CATATG 5 cut(s) 700, 1623, 2063, 2580, 2611
Fnu4HI GCNGC 6 cut(s) 269, 819, 1879, 2276, 2391, 2394
FokI GGATG 5 cut(s) 461, 821, 1549, 1570, 2178
Fsp4HI GCNGC 6 cut(s) 269, 819, 1879, 2276, 2391, 2394
FspBI CTAG 4 cut(s) 968, 1533, 2286, 2307
GlaI GCGC 2 cut(s) 414, 1651
GluI GCNGC 6 cut(s) 269, 819, 1879, 2276, 2391, 2394
HaeII RGCGCY 2 cut(s) 416, 1653
HaeIII GGCC 8 cut(s) 88, 133, 430, 813, 1359, 2075, 2248, 2552
HapII CCGG 8 cut(s) 431, 1784, 1820, 1925, 2213, 2269, 2313, 2714
HhaI GCGC 2 cut(s) 415, 1652
Hin1I GRCGYC 1 cut(s) 1650
Hin6I GCGC 2 cut(s) 413, 1650
HinP1I GCGC 2 cut(s) 413, 1650
HincII GTYRAC 3 cut(s) 1186, 1267, 1850
HindII GTYRAC 3 cut(s) 1186, 1267, 1850
HindIII AAGCTT 1 cut(s) 2569
HpaI GTTAAC 1 cut(s) 1186
HpaII CCGG 8 cut(s) 431, 1784, 1820, 1925, 2213, 2269, 2313, 2714
HphI GGTGA 7 cut(s) 92, 434, 887, 965, 1144, 1202, 1280
Hpy99I CGWCG 2 cut(s) 1160, 2168
HpyAV CCTTC 9 cut(s) 219, 258, 281, 397, 622, 667, 835, 884, 2507
HpyCH4III ACNGT 9 cut(s) 523, 1045, 1373, 1394, 1549, 1710, 1817, 1894, 2002
HpyCH4IV ACGT 4 cut(s) 784, 1269, 2163, 2322
HpyF10VI GCNNNNNNNGC 2 cut(s) 52, 2033
HpyF3I CTNAG 6 cut(s) 617, 668, 1307, 2339, 2352, 2562
HpySE526I ACGT 4 cut(s) 784, 1269, 2163, 2322
Hsp92I GRCGYC 1 cut(s) 1650
HspAI GCGC 2 cut(s) 413, 1650
KasI GGCGCC 1 cut(s) 1649
Kpn2I TCCGGA 2 cut(s) 1924, 2212
KspAI GTTAAC 1 cut(s) 1186
LguI GCTCTTC 1 cut(s) 312
LmnI GCTCC 2 cut(s) 1428, 2272
Lsp1109I GCAGC 6 cut(s) 280, 805, 1865, 2287, 2377, 2380
LweI GCATC 9 cut(s) 235, 483, 874, 1151, 1161, 1486, 1970, 2080, 2356
MabI ACCWGGT 1 cut(s) 2707
MaeI CTAG 4 cut(s) 968, 1533, 2286, 2307
MaeII ACGT 4 cut(s) 784, 1269, 2163, 2322
MbiI CCGCTC 1 cut(s) 557
MfeI CAATTG 1 cut(s) 1093
MflI RGATCY 3 cut(s) 124, 161, 620
MlsI TGGCCA 1 cut(s) 813
MluNI TGGCCA 1 cut(s) 813
Mly113I GGCGCC 1 cut(s) 1650
MlyI GAGTC 7 cut(s) 173, 1712, 1868, 1937, 2230, 2463, 2555
MmeI TCCRAC 2 cut(s) 216, 2599
Mox20I TGGCCA 1 cut(s) 813
Mph1103I ATGCAT 1 cut(s) 1479
MroI TCCGGA 2 cut(s) 1924, 2212
MroXI GAANNNNTTC 2 cut(s) 39, 611
MscI TGGCCA 1 cut(s) 813
MseI TTAA 5 cut(s) 105, 765, 1185, 1248, 1836
MslI CAYNNNNRTG 4 cut(s) 1895, 2062, 2196, 2538
Msp20I TGGCCA 1 cut(s) 813
MspA1I CMGCKG 2 cut(s) 271, 2390
MspI CCGG 8 cut(s) 431, 1784, 1820, 1925, 2213, 2269, 2313, 2714
MspR9I CCNGG 3 cut(s) 2270, 2313, 2709
MunI CAATTG 1 cut(s) 1093
Mva1269I GAATGC 2 cut(s) 35, 393
MvaI CCWGG 1 cut(s) 2709
MvnI CGCG 2 cut(s) 1721, 2208
MwoI GCNNNNNNNGC 2 cut(s) 52, 2033
NarI GGCGCC 1 cut(s) 1650
NciI CCSGG 2 cut(s) 2270, 2313
NcoI CCATGG 1 cut(s) 207
NdeI CATATG 5 cut(s) 700, 1623, 2063, 2580, 2611
NlaIV GGNNCC 7 cut(s) 163, 855, 1100, 1651, 2217, 2732, 2769
NmuCI GTSAC 9 cut(s) 422, 658, 682, 893, 1208, 1286, 1704, 1765, 2315
NruI TCGCGA 1 cut(s) 2208
NsiI ATGCAT 1 cut(s) 1479
NspI RCATGY 5 cut(s) 635, 1477, 1802, 1888, 2334
NspV TTCGAA 1 cut(s) 2399
PaeI GCATGC 1 cut(s) 1477
PagI TCATGA 4 cut(s) 439, 831, 1509, 1896
PciI ACATGT 2 cut(s) 631, 1884
PciSI GCTCTTC 1 cut(s) 312
PctI GAATGC 2 cut(s) 35, 393
PdmI GAANNNNTTC 2 cut(s) 39, 611
PfeI GAWTC 3 cut(s) 1118, 2383, 2517
PflFI GACNNNGTC 2 cut(s) 2313, 2453
PflMI CCANNNNNTGG 1 cut(s) 649
PkrI GCNGC 6 cut(s) 270, 820, 1880, 2277, 2392, 2395
PleI GAGTC 7 cut(s) 173, 1711, 1867, 1936, 2230, 2462, 2554
PluTI GGCGCC 1 cut(s) 1653
PpsI GAGTC 7 cut(s) 173, 1711, 1867, 1936, 2230, 2462, 2554
PpuMI RGGWCCY 3 cut(s) 853, 1099, 2153
PscI ACATGT 2 cut(s) 631, 1884
PshAI GACNNNNGTC 1 cut(s) 1284
PsiI TTATAA 1 cut(s) 569
Psp5II RGGWCCY 3 cut(s) 853, 1099, 2153
Psp6I CCWGG 1 cut(s) 2707
PspEI GGTNACC 1 cut(s) 893
PspGI CCWGG 1 cut(s) 2707
PspN4I GGNNCC 7 cut(s) 163, 855, 1100, 1651, 2217, 2732, 2769
PspPI GGNCC 7 cut(s) 131, 853, 1099, 1687, 2153, 2711, 2731
PspPPI RGGWCCY 3 cut(s) 853, 1099, 2153
PstNI CAGNNNCTG 1 cut(s) 2393
PsuI RGATCY 3 cut(s) 124, 161, 620
PsyI GACNNNGTC 2 cut(s) 2313, 2453
PvuII CAGCTG 2 cut(s) 271, 2390
RruI TCGCGA 1 cut(s) 2208
RsaI GTAC 7 cut(s) 1353, 1391, 1565, 1999, 2227, 2305, 2478
RsaNI GTAC 7 cut(s) 1352, 1390, 1564, 1998, 2226, 2304, 2477
RseI CAYNNNNRTG 4 cut(s) 1895, 2062, 2196, 2538
SapI GCTCTTC 1 cut(s) 312
SaqAI TTAA 5 cut(s) 105, 765, 1185, 1248, 1836
SatI GCNGC 6 cut(s) 269, 819, 1879, 2276, 2391, 2394
Sau96I GGNCC 7 cut(s) 131, 853, 1099, 1687, 2153, 2711, 2731
SchI GAGTC 7 cut(s) 173, 1712, 1868, 1937, 2230, 2463, 2555
ScrFI CCNGG 3 cut(s) 2270, 2313, 2709
SexAI ACCWGGT 1 cut(s) 2707
SfaNI GCATC 9 cut(s) 235, 483, 874, 1151, 1161, 1486, 1970, 2080, 2356
SfoI GGCGCC 1 cut(s) 1651
SfuI TTCGAA 1 cut(s) 2399
SinI GGWCC 6 cut(s) 853, 1099, 1687, 2153, 2711, 2731
SmiMI CAYNNNNRTG 4 cut(s) 1895, 2062, 2196, 2538
SmlI CTYRAG 1 cut(s) 654
SmoI CTYRAG 1 cut(s) 654
SphI GCATGC 1 cut(s) 1477
SsiI CCGC 9 cut(s) 44, 557, 726, 887, 1399, 1412, 1627, 1721, 1995
SspDI GGCGCC 1 cut(s) 1649
SspMI CTAG 4 cut(s) 968, 1533, 2286, 2307
StyD4I CCNGG 3 cut(s) 2268, 2311, 2707
StyI CCWWGG 2 cut(s) 207, 1532
TaaI ACNGT 9 cut(s) 523, 1045, 1373, 1394, 1549, 1710, 1817, 1894, 2002
TaiI ACGT 4 cut(s) 787, 1272, 2166, 2325
TaqI TCGA 7 cut(s) 71, 365, 801, 1480, 2381, 2399, 2525
TaqII GACCGA 1 cut(s) 2466
TatI WGTACW 3 cut(s) 1351, 1389, 2303
TfiI GAWTC 3 cut(s) 1118, 2383, 2517
Tru1I TTAA 5 cut(s) 105, 765, 1185, 1248, 1836
Tru9I TTAA 5 cut(s) 105, 765, 1185, 1248, 1836
TscAI CASTG 2 cut(s) 687, 2467
TseFI GTSAC 9 cut(s) 422, 658, 682, 893, 1208, 1286, 1704, 1765, 2315
TseI GCWGC 6 cut(s) 268, 818, 1878, 2275, 2390, 2393
Tsp45I GTSAC 9 cut(s) 422, 658, 682, 893, 1208, 1286, 1704, 1765, 2315
TspGWI ACGGA 5 cut(s) 154, 329, 515, 1094, 1570
TspRI CASTG 2 cut(s) 687, 2467
Tth111I GACNNNGTC 2 cut(s) 2313, 2453
Van91I CCANNNNNTGG 1 cut(s) 649
VpaK11BI GGWCC 6 cut(s) 853, 1099, 1687, 2153, 2711, 2731
XagI CCTNNNNNAGG 2 cut(s) 1682, 2119
XapI RAATTY 3 cut(s) 38, 563, 835
XceI RCATGY 5 cut(s) 635, 1477, 1802, 1888, 2334
XmaJI CCTAGG 1 cut(s) 1532
XmnI GAANNNNTTC 2 cut(s) 39, 611
XspI CTAG 4 cut(s) 968, 1533, 2286, 2307
Zsp2I ATGCAT 1 cut(s) 1479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.