Rh5CG497400

protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000074
Physical Location & Seq
Forward (+)
69213891 .. 69215807
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG497400.1

Sequence Viewer

Length: 1917 bp
ATGAACATGAGGGGAATGGAGTCAGAAGAGTTCTGCTGCAGGTACAGTTTGGATGAAGAAGGCAGACTTGCCAATCTGTTTTGGAGGGACTACCAATCATTTTTGGACTACAGCGCATATAGTGATGTGGTCATTATGGACAGCACATACAAGACAAATTTGTACGGAAAGCCTCTTGTTGTATTTGTTGGGTGCAATAATCACAGAGCTACAGTTGTTTTCGGGTTTGCCCTTATACGGGATGAGAGGGAGGATACGTACACATGGGTGTTCGAGAACTTCCTTGAGTCCATGGATTATAAACAACCTTCATCCATCCTAACCGATGGCGATGAGTCAATCAGAAAGGTTGTTGAGCGGGTGATGCCAATAGCTCGGCACAGGTTATGTGCATGGCACATTGGAAGAAACATATCGCAGAATGTGAAGGATGTTGCAGATCAGAAAAGTCTTTCAAAAATGATTTATTCCTCAATGTGTGTCAGTGAATGGGAGGCAGCTTGGCAGTCAATTGTGGTTAGAAATGGGTTGTCGGACAATGCATGGGTTATAAGTTTGTATAACAAACGGGAGAGGTGGGTAGAAGCATTCTTCAGAGGGCACTTCTTCGGTGGAATGTGCAGTACGCAGCGCGTCGAAGGCATGCACGCAAAGCTGAAAAAGGAGATTGGGAGGCACACTAGGTTATGTGAAGTTATGCCAAGAATGGAGAGGACACTTGGCCGCATCCGGAATCACGTACTGTATGACAACTTCAGGTCTAAAAACGGTGCTCCAGTATATGAGACACACATGAGGGGAATAGAGGAAGACGCATGTAGGTTGTTCACACACGACATCTTTGTTATGATTCAGTCCCAAATCTTGTTTGAGAGGAGGTTTGTTCTGGTGCAGAAAGTACCATTTCCCATTTCTGATACAGTGATGTTCTACCTTGCCCAATATGATAGGCCTGAACGACGGTGGTGTGTTGAGTTCCATTCAGACCCGACAAACCCAACATGGCTGTGCTCCTGCAAACTTTTTGAATCAGATGGTATTCCTTGTGGCCACATTTTCTGTGTCTTGAAAGATCAGCTTCTGTCAAGATATCCGGCTTCTTTGATAACCAAACGTTGGACAAAGTGTGTCAGTGATTCAACAGTTGCACCCAAAATTAAGGTCCCCGATCATGACAAGTCAGCTCAGGTGGCCAGGTATTCTGCCCTCATATCAGAAGTGTCCAAAGCGTGCTTAAATTACTCATTTTCAGATGAAGGTTTCAGGGTAGGAATGATTGAATTTGCAAGGCTAGTTCAAAGCTCAAGTGAGTTCAAGATAGATCCACCCATGGACACATCAAGAGTGCCTCCGAGCAGAAACGTTGTGAGGGACCCGAAAATATCCCGTACAAAGGGCATGCCCTCTAATCCCACAACAAACACTGAAAATGCCAACAAAGAGCAGCGGCTTTGCGGTAAATGTTTTATGCCCGGTCATAACAGGCGCACCTGTACAGCCGGTGAAGAAGGGGTTCGAAATCGTGGATATGCAGATTCCCATCATACGGTACCTTGTGTTGAAGCTTACTCAGGTTCGGTACCTGATGTTGCACCATCAGTCCCAAATATGGCACACCTATCATCCTATGTGGTAGCCGCAGTCCCTGATCCCCCTGCCTCAGTTCAGCTTCCTGCAGACTTACCATATCATCCCACACCTTGTGTAACTGAGTATGGTATGGAGCTTGATTTTGATGACAAGGGCGCTAGCAGAGTTGGTGGTATTGGTCAATTCCCATTCTTCGTTGCATCCCAGCATTCCTCATCCTTCGGTATTCTGCCTTTTTCATTCAACCTGAACCAGACCGCCCCAAATGATGATGTTACGCAGCTGAAACCGGACTGTTCATATCCACCCCCCAAGTGGATCCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

638

Amino Acids

72.75

Weight (kDa)

7.22

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ZSWIM1-3_RNaseH-like PF21056 14 - 126 1.1e-08 Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
MULE PF10551 43 - 136 9.5e-26 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 300, 551
Acc36I ACCTGC 1 cut(s) 30
Acc65I GGTACC 2 cut(s) 1549, 1579
AccB1I GGYRCC 2 cut(s) 1549, 1579
AccB7I CCANNNNNTGG 1 cut(s) 1116
AccBSI CCGCTC 1 cut(s) 358
AccII CGCG 1 cut(s) 633
AccIII TCCGGA 1 cut(s) 729
AciI CCGC 6 cut(s) 358, 724, 1447, 1455, 1638, 1848
AclI AACGTT 2 cut(s) 1114, 1362
AclWI GGATC 4 cut(s) 1316, 1643, 1903, 1916
AcoI YGGCCR 3 cut(s) 721, 1048, 1191
AcsI RAATTY 2 cut(s) 157, 1280
AcuI CTGAAG 2 cut(s) 577, 739
AdeI CACNNNGTG 1 cut(s) 1703
AfiI CCNNNNNNNGG 7 cut(s) 237, 238, 1116, 1393, 1546, 1609, 1905
AgsI TTSAA 9 cut(s) 456, 1028, 1069, 1140, 1280, 1298, 1315, 1562, 1834
AjnI CCWGG 1 cut(s) 1193
AleI CACNNNNGTG 1 cut(s) 266
Alw21I GWGCWC 2 cut(s) 775, 1013
Alw26I GTCTC 1 cut(s) 779
AlwI GGATC 4 cut(s) 1316, 1643, 1903, 1916
AlwNI CAGNNNCTG 2 cut(s) 1081, 1646
Aor13HI TCCGGA 1 cut(s) 729
AoxI GGCC 4 cut(s) 721, 950, 1048, 1191
ApeKI GCWGC 5 cut(s) 36, 497, 628, 1444, 1870
ApoI RAATTY 2 cut(s) 157, 1280
ArsI GACNNNNNNTTYG 2 cut(s) 1146, 1178
Asp700I GAANNNNTTC 1 cut(s) 1512
Asp718I GGTACC 2 cut(s) 1549, 1579
AspLEI GCGC 4 cut(s) 116, 633, 1488, 1748
AspS9I GGNCC 2 cut(s) 1162, 1372
AsuC2I CCSGG 1 cut(s) 1473
AsuHPI GGTGA 2 cut(s) 373, 1514
AsuII TTCGAA 1 cut(s) 1516
AsuNHI GCTAGC 1 cut(s) 1748
AvaII GGWCC 2 cut(s) 1162, 1372
BaeGI GKGCMC 1 cut(s) 603
BalI TGGCCA 2 cut(s) 1050, 1193
BamHI GGATCC 1 cut(s) 1908
BanI GGYRCC 2 cut(s) 1549, 1579
BarI GAAGNNNNNNTAC 2 cut(s) 737, 769
BbsI GAAGAC 1 cut(s) 816
Bbv12I GWGCWC 2 cut(s) 775, 1013
BbvI GCAGC 5 cut(s) 23, 509, 640, 1456, 1882
BccI CCATC 5 cut(s) 320, 323, 1028, 1548, 1603
BciT130I CCWGG 1 cut(s) 1195
BciVI GTATCC 1 cut(s) 247
BcnI CCSGG 1 cut(s) 1473
BcoDI GTCTC 1 cut(s) 779
BfaI CTAG 3 cut(s) 681, 1292, 1749
BfmI CTRYAG 4 cut(s) 37, 109, 210, 1674
BfoI RGCGCY 1 cut(s) 1749
BfuAI ACCTGC 1 cut(s) 30
BfuI GTATCC 1 cut(s) 247
BisI GCNGC 8 cut(s) 37, 498, 629, 724, 1445, 1448, 1638, 1871
BlsI GCNGC 8 cut(s) 38, 499, 630, 725, 1446, 1449, 1639, 1872
Bme1390I CCNGG 2 cut(s) 1195, 1473
Bme18I GGWCC 2 cut(s) 1162, 1372
BmgT120I GGNCC 2 cut(s) 1162, 1372
BmiI GGNNCC 6 cut(s) 1164, 1373, 1374, 1551, 1581, 1910
BmrFI CCNGG 2 cut(s) 1195, 1473
BmsI GCATC 3 cut(s) 354, 735, 1799
BmtI GCTAGC 1 cut(s) 1752
BpiI GAAGAC 1 cut(s) 816
BpmI CTGGAG 1 cut(s) 759
Bpu10I CCTNAGC 1 cut(s) 1185
Bpu14I TTCGAA 1 cut(s) 1516
BpuEI CTTGAG 2 cut(s) 305, 1288
BpuMI CCSGG 1 cut(s) 1473
BsaAI YACGTR 2 cut(s) 258, 739
BsaBI GATNNNNATC 1 cut(s) 1539
BsaJI CCNNGG 2 cut(s) 291, 1329
BsaWI WCCGGW 2 cut(s) 729, 1879
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 7 cut(s) 237, 238, 1116, 1393, 1546, 1609, 1905
Bse118I RCCGGY 1 cut(s) 1499
Bse1I ACTGG 1 cut(s) 776
Bse8I GATNNNNATC 1 cut(s) 1539
BseAI TCCGGA 1 cut(s) 729
BseBI CCWGG 1 cut(s) 1195
BseDI CCNNGG 2 cut(s) 291, 1329
BseJI GATNNNNATC 1 cut(s) 1539
BseLI CCNNNNNNNGG 7 cut(s) 237, 238, 1116, 1393, 1546, 1609, 1905
BseMII CTCAG 4 cut(s) 1199, 1584, 1674, 1701
BseNI ACTGG 1 cut(s) 776
BseRI GAGGAG 1 cut(s) 889
BseSI GKGCMC 1 cut(s) 603
BseXI GCAGC 5 cut(s) 23, 509, 640, 1456, 1882
BseYI CCCAGC 1 cut(s) 1794
BsgI GTGCAG 2 cut(s) 640, 911
Bsh1236I CGCG 1 cut(s) 633
BshFI GGCC 4 cut(s) 723, 952, 1050, 1193
BshNI GGYRCC 2 cut(s) 1549, 1579
BsiHKAI GWGCWC 2 cut(s) 775, 1013
BsiSI CCGG 5 cut(s) 730, 1094, 1473, 1500, 1880
BslFI GGGAC 6 cut(s) 101, 841, 1148, 1385, 1586, 1628
BslI CCNNNNNNNGG 7 cut(s) 237, 238, 1116, 1393, 1546, 1609, 1905
BsmAI GTCTC 1 cut(s) 779
BsmFI GGGAC 6 cut(s) 101, 841, 1148, 1385, 1586, 1628
BsmI GAATGC 2 cut(s) 587, 1798
BsnI GGCC 4 cut(s) 723, 952, 1050, 1193
Bsp119I TTCGAA 1 cut(s) 1516
Bsp1286I GDGCHC 3 cut(s) 603, 775, 1013
Bsp13I TCCGGA 1 cut(s) 729
Bsp1407I TGTACA 1 cut(s) 1493
Bsp143I GATC 6 cut(s) 439, 1072, 1168, 1321, 1648, 1908
Bsp19I CCATGG 2 cut(s) 291, 1329
BspACI CCGC 6 cut(s) 358, 724, 1447, 1455, 1638, 1848
BspANI GGCC 4 cut(s) 723, 952, 1050, 1193
BspCNI CTCAG 4 cut(s) 1198, 1583, 1673, 1702
BspEI TCCGGA 1 cut(s) 729
BspFNI CGCG 1 cut(s) 633
BspHI TCATGA 1 cut(s) 1171
BspLI GGNNCC 6 cut(s) 1164, 1373, 1374, 1551, 1581, 1910
BspMAI CTGCAG 2 cut(s) 41, 1678
BspMI ACCTGC 1 cut(s) 30
BspOI GCTAGC 1 cut(s) 1752
BspPI GGATC 4 cut(s) 1316, 1643, 1903, 1916
BspT104I TTCGAA 1 cut(s) 1516
BspT107I GGYRCC 2 cut(s) 1549, 1579
BsrBI CCGCTC 1 cut(s) 358
BsrFI RCCGGY 1 cut(s) 1499
BsrGI TGTACA 1 cut(s) 1493
BsrI ACTGG 1 cut(s) 776
BssAI RCCGGY 1 cut(s) 1499
BssECI CCNNGG 2 cut(s) 291, 1329
BssMI GATC 6 cut(s) 439, 1072, 1168, 1321, 1648, 1908
BssT1I CCWWGG 2 cut(s) 291, 1329
Bst2UI CCWGG 1 cut(s) 1195
Bst4CI ACNGT 9 cut(s) 47, 214, 744, 770, 922, 963, 1144, 1549, 1886
Bst6I CTCTTC 1 cut(s) 21
BstAUI TGTACA 1 cut(s) 1493
BstBAI YACGTR 2 cut(s) 258, 739
BstBI TTCGAA 1 cut(s) 1516
BstC8I GCNNGC 5 cut(s) 644, 648, 1231, 1400, 1750
BstDEI CTNAG 4 cut(s) 1185, 1570, 1660, 1710
BstDSI CCRYGG 2 cut(s) 291, 1329
BstFNI CGCG 1 cut(s) 633
BstH2I RGCGCY 1 cut(s) 1749
BstHHI GCGC 4 cut(s) 116, 633, 1488, 1748
BstKTI GATC 6 cut(s) 442, 1075, 1171, 1324, 1651, 1911
BstMAI GTCTC 1 cut(s) 779
BstMBI GATC 6 cut(s) 439, 1072, 1168, 1321, 1648, 1908
BstMWI GCNNNNNNNGC 4 cut(s) 364, 639, 652, 1190
BstNI CCWGG 1 cut(s) 1195
BstNSI RCATGY 3 cut(s) 646, 819, 1402
BstSCI CCNGG 2 cut(s) 1193, 1471
BstSFI CTRYAG 4 cut(s) 37, 109, 210, 1674
BstSLI GKGCMC 1 cut(s) 603
BstSNI TACGTA 1 cut(s) 258
BstUI CGCG 1 cut(s) 633
BstV1I GCAGC 5 cut(s) 23, 509, 640, 1456, 1882
BstV2I GAAGAC 1 cut(s) 816
BstX2I RGATCY 2 cut(s) 1321, 1908
BstYI RGATCY 2 cut(s) 1321, 1908
BsuI GTATCC 1 cut(s) 247
BsuRI GGCC 4 cut(s) 723, 952, 1050, 1193
BtgI CCRYGG 2 cut(s) 291, 1329
BtgZI GCGATG 1 cut(s) 345
BtsIMutI CAGTG 4 cut(s) 490, 927, 1138, 1422
BveI ACCTGC 1 cut(s) 30
Cac8I GCNNGC 5 cut(s) 644, 648, 1231, 1400, 1750
CaiI CAGNNNCTG 2 cut(s) 1081, 1646
CciI TCATGA 1 cut(s) 1171
CfoI GCGC 4 cut(s) 116, 633, 1488, 1748
Cfr10I RCCGGY 1 cut(s) 1499
Cfr13I GGNCC 2 cut(s) 1162, 1372
CseI GACGC 2 cut(s) 622, 821
DdeI CTNAG 4 cut(s) 1185, 1570, 1660, 1710
DpnI GATC 6 cut(s) 441, 1074, 1170, 1323, 1650, 1910
DpnII GATC 6 cut(s) 439, 1072, 1168, 1321, 1648, 1908
DraIII CACNNNGTG 1 cut(s) 1703
EaeI YGGCCR 3 cut(s) 721, 1048, 1191
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco105I TACGTA 1 cut(s) 258
Eco130I CCWWGG 2 cut(s) 291, 1329
Eco147I AGGCCT 1 cut(s) 952
Eco32I GATATC 1 cut(s) 1091
Eco47I GGWCC 2 cut(s) 1162, 1372
Eco57I CTGAAG 2 cut(s) 577, 739
EcoO109I RGGNCCY 2 cut(s) 1162, 1372
EcoRII CCWGG 1 cut(s) 1193
EcoRV GATATC 1 cut(s) 1091
EcoT14I CCWWGG 2 cut(s) 291, 1329
EcoT22I ATGCAT 1 cut(s) 544
ErhI CCWWGG 2 cut(s) 291, 1329
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 1062, 1094
FaqI GGGAC 6 cut(s) 101, 841, 1148, 1385, 1586, 1628
FauI CCCGC 1 cut(s) 351
Fnu4HI GCNGC 8 cut(s) 37, 498, 629, 724, 1445, 1448, 1638, 1871
Fsp4HI GCNGC 8 cut(s) 37, 498, 629, 724, 1445, 1448, 1638, 1871
FspBI CTAG 3 cut(s) 681, 1292, 1749
GlaI GCGC 4 cut(s) 115, 632, 1487, 1747
GluI GCNGC 8 cut(s) 37, 498, 629, 724, 1445, 1448, 1638, 1871
GsaI CCCAGC 1 cut(s) 1798
GsuI CTGGAG 1 cut(s) 759
HaeII RGCGCY 1 cut(s) 1749
HaeIII GGCC 4 cut(s) 723, 952, 1050, 1193
HapII CCGG 5 cut(s) 730, 1094, 1473, 1500, 1880
HgaI GACGC 2 cut(s) 622, 821
HhaI GCGC 4 cut(s) 116, 633, 1488, 1748
Hin6I GCGC 4 cut(s) 114, 631, 1486, 1746
HinP1I GCGC 4 cut(s) 114, 631, 1486, 1746
HindIII AAGCTT 1 cut(s) 1563
HinfI GANTC 8 cut(s) 20, 287, 335, 733, 850, 1028, 1136, 1535
HpaII CCGG 5 cut(s) 730, 1094, 1473, 1500, 1880
HphI GGTGA 2 cut(s) 373, 1514
Hpy166II GTNNAC 2 cut(s) 261, 828
Hpy188III TCNNGA 7 cut(s) 274, 730, 1066, 1086, 1172, 1315, 1341
Hpy8I GTNNAC 2 cut(s) 261, 828
Hpy99I CGWCG 2 cut(s) 638, 963
HpyAV CCTTC 7 cut(s) 53, 318, 421, 632, 1250, 1502, 1819
HpyCH4III ACNGT 9 cut(s) 47, 214, 744, 770, 922, 963, 1144, 1549, 1886
HpyCH4IV ACGT 4 cut(s) 257, 738, 1114, 1362
HpyF10VI GCNNNNNNNGC 4 cut(s) 364, 639, 652, 1190
HpyF3I CTNAG 4 cut(s) 1185, 1570, 1660, 1710
HpySE526I ACGT 4 cut(s) 257, 738, 1114, 1362
HspAI GCGC 4 cut(s) 114, 631, 1486, 1746
KflI GGGWCCC 1 cut(s) 1372
Kpn2I TCCGGA 1 cut(s) 729
KpnI GGTACC 2 cut(s) 1553, 1583
Kzo9I GATC 6 cut(s) 439, 1072, 1168, 1321, 1648, 1908
LmnI GCTCC 3 cut(s) 778, 1016, 1723
Lsp1109I GCAGC 5 cut(s) 23, 509, 640, 1456, 1882
LweI GCATC 3 cut(s) 354, 735, 1799
MaeI CTAG 3 cut(s) 681, 1292, 1749
MaeII ACGT 4 cut(s) 257, 738, 1114, 1362
MaeIII GTNAC 2 cut(s) 1705, 1864
MalI GATC 6 cut(s) 441, 1074, 1170, 1323, 1650, 1910
MbiI CCGCTC 1 cut(s) 358
MboI GATC 6 cut(s) 439, 1072, 1168, 1321, 1648, 1908
MboII GAAGA 8 cut(s) 38, 68, 417, 583, 598, 821, 1517, 1774
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 2 cut(s) 1321, 1908
MhlI GDGCHC 3 cut(s) 603, 775, 1013
MlsI TGGCCA 2 cut(s) 1050, 1193
MluCI AATT 6 cut(s) 157, 510, 1155, 1237, 1280, 1772
MluNI TGGCCA 2 cut(s) 1050, 1193
MlyI GAGTC 3 cut(s) 29, 296, 344
MmeI TCCRAC 2 cut(s) 513, 1097
Mox20I TGGCCA 2 cut(s) 1050, 1193
Mph1103I ATGCAT 1 cut(s) 544
MroI TCCGGA 1 cut(s) 729
MroXI GAANNNNTTC 1 cut(s) 1512
MscI TGGCCA 2 cut(s) 1050, 1193
MseI TTAA 2 cut(s) 1158, 1235
MslI CAYNNNNRTG 2 cut(s) 266, 1006
Msp20I TGGCCA 2 cut(s) 1050, 1193
MspA1I CMGCKG 2 cut(s) 1447, 1873
MspI CCGG 5 cut(s) 730, 1094, 1473, 1500, 1880
MspR9I CCNGG 2 cut(s) 1195, 1473
MunI CAATTG 1 cut(s) 510
Mva1269I GAATGC 2 cut(s) 587, 1798
MvaI CCWGG 1 cut(s) 1195
MvnI CGCG 1 cut(s) 633
MwoI GCNNNNNNNGC 4 cut(s) 364, 639, 652, 1190
NciI CCSGG 1 cut(s) 1473
NcoI CCATGG 2 cut(s) 291, 1329
NdeII GATC 6 cut(s) 439, 1072, 1168, 1321, 1648, 1908
NheI GCTAGC 1 cut(s) 1748
NlaIV GGNNCC 6 cut(s) 1164, 1373, 1374, 1551, 1581, 1910
NmeAIII GCCGAG 1 cut(s) 355
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 3 cut(s) 646, 819, 1402
NspV TTCGAA 1 cut(s) 1516
OliI CACNNNNGTG 1 cut(s) 266
PaeI GCATGC 2 cut(s) 646, 1402
PagI TCATGA 1 cut(s) 1171
PceI AGGCCT 1 cut(s) 952
PctI GAATGC 2 cut(s) 587, 1798
PdmI GAANNNNTTC 1 cut(s) 1512
PfeI GAWTC 5 cut(s) 733, 850, 1028, 1136, 1535
PflMI CCANNNNNTGG 1 cut(s) 1116
PkrI GCNGC 8 cut(s) 38, 499, 630, 725, 1446, 1449, 1639, 1872
PleI GAGTC 3 cut(s) 28, 295, 343
PpsI GAGTC 3 cut(s) 28, 295, 343
Ppu21I YACGTR 2 cut(s) 258, 739
PpuMI RGGWCCY 2 cut(s) 1162, 1372
PsiI TTATAA 2 cut(s) 300, 551
Psp1406I AACGTT 2 cut(s) 1114, 1362
Psp5II RGGWCCY 2 cut(s) 1162, 1372
Psp6I CCWGG 1 cut(s) 1193
PspFI CCCAGC 1 cut(s) 1794
PspGI CCWGG 1 cut(s) 1193
PspN4I GGNNCC 6 cut(s) 1164, 1373, 1374, 1551, 1581, 1910
PspPI GGNCC 2 cut(s) 1162, 1372
PspPPI RGGWCCY 2 cut(s) 1162, 1372
PstI CTGCAG 2 cut(s) 41, 1678
PstNI CAGNNNCTG 2 cut(s) 1081, 1646
PsuI RGATCY 2 cut(s) 1321, 1908
PvuII CAGCTG 1 cut(s) 1873
RseI CAYNNNNRTG 2 cut(s) 266, 1006
SaqAI TTAA 2 cut(s) 1158, 1235
SatI GCNGC 8 cut(s) 37, 498, 629, 724, 1445, 1448, 1638, 1871
Sau3AI GATC 6 cut(s) 439, 1072, 1168, 1321, 1648, 1908
Sau96I GGNCC 2 cut(s) 1162, 1372
SchI GAGTC 3 cut(s) 29, 296, 344
ScrFI CCNGG 2 cut(s) 1195, 1473
SduI GDGCHC 3 cut(s) 603, 775, 1013
SfaNI GCATC 3 cut(s) 354, 735, 1799
SfcI CTRYAG 4 cut(s) 37, 109, 210, 1674
SfuI TTCGAA 1 cut(s) 1516
SinI GGWCC 2 cut(s) 1162, 1372
SmiMI CAYNNNNRTG 2 cut(s) 266, 1006
SmlI CTYRAG 2 cut(s) 284, 1303
SmoI CTYRAG 2 cut(s) 284, 1303
SnaBI TACGTA 1 cut(s) 258
SphI GCATGC 2 cut(s) 646, 1402
Sse9I AATT 6 cut(s) 157, 510, 1155, 1237, 1280, 1772
SseBI AGGCCT 1 cut(s) 952
SsiI CCGC 6 cut(s) 358, 724, 1447, 1455, 1638, 1848
SspMI CTAG 3 cut(s) 681, 1292, 1749
StuI AGGCCT 1 cut(s) 952
StyD4I CCNGG 2 cut(s) 1193, 1471
StyI CCWWGG 2 cut(s) 291, 1329
TaaI ACNGT 9 cut(s) 47, 214, 744, 770, 922, 963, 1144, 1549, 1886
TaiI ACGT 4 cut(s) 260, 741, 1117, 1365
TaqI TCGA 3 cut(s) 273, 636, 1516
TasI AATT 6 cut(s) 157, 510, 1155, 1237, 1280, 1772
TatI WGTACW 1 cut(s) 1493
TauI GCSGC 3 cut(s) 726, 1450, 1640
TfiI GAWTC 5 cut(s) 733, 850, 1028, 1136, 1535
Tru1I TTAA 2 cut(s) 1158, 1235
Tru9I TTAA 2 cut(s) 1158, 1235
TscAI CASTG 4 cut(s) 490, 927, 1138, 1429
TseI GCWGC 5 cut(s) 36, 497, 628, 1444, 1870
TspDTI ATGAA 6 cut(s) 17, 69, 300, 1269, 1818, 1878
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 4 cut(s) 490, 927, 1138, 1429
Van91I CCANNNNNTGG 1 cut(s) 1116
VpaK11BI GGWCC 2 cut(s) 1162, 1372
XapI RAATTY 2 cut(s) 157, 1280
XceI RCATGY 3 cut(s) 646, 819, 1402
XcmI CCANNNNNNNNNTGG 1 cut(s) 1902
XmnI GAANNNNTTC 1 cut(s) 1512
XspI CTAG 3 cut(s) 681, 1292, 1749
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.