Rmu_ssc0000400.1_g000101

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000400.1
OG0000074
Physical Location & Seq
Reverse (-)
376926 .. 380892
3967 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000400.1_g000101.1.cds

Sequence Viewer

Length: 2490 bp
atgtcaggtttagatttggagaacacaattttcacgattggagaagtgaggtttgagatggaggagagtggtttgcgatatactgaccaacagtactacaattctggcatggacccaaacgctgaagaaggatccagtactgacaattcggacgaggagattgaatacacaaatttgatggaagaggcagaaatgcaagattgtacacgatacagagggaagctgtataaggatttgaaattagaggatttgaaggaagttgagtttaatagcatcgaggaagtggacaagttctactcttactattctctagcgaaggggttcagtgtaaggaagcagaagctcgacaagaaccgtgcgggactagtcattagaagacagttggtttgctcgaagcaagggaagcgaagagccccaaaagatactattagtcatcagcaagggtcgaaggggaagcaggacaattgtcagctaagttcaattgggaattgtcaacagaactcgacaaatatcagtgggcagaaccctcacaaaaagcagtgcactgaaacccgacgagcaacaagggttaattgtccagcaagttttgttgttaggttttgtaccaaaaggagggtgtactatgcctcagaattcataactgaacacaaccatgctttgggtagacctgagcatcgtcagtttcgaagatcacacctcagggaccgcaaccttgctcagcttaatgcatcaaggaaagttttagtgagaacatgccatgcttacgagttcttggtacaccaagctggaggctacgagtttgttggattatacaacaaaccacagggtgaaaggaaagaagtagtaatggatggggatgcacagtctttggtaacttggatgaatttcaaggcaatgcgggacccccatttttattgcatattcagtgttgataaggaggggaggcttgcaaatgtgttttggcgagatgggcagtcgttaaccgattacaatgcttttggtgaggttctgattttcgacagcagtgaaaaatgcaacatgtatggcaagcccttggctgtattcgtcgggtgtaataaccacagagccacggtcctttttggttatgcattgttagtagatgaaacaaaggaaacatatgattgggtgattacatgctttctgacctccatgcgtgggaaaaaaccaatttcggtgatcacaaatagtgatgatgcgatatgcaatgtggtaacgaatttgataccaagggctagacaccgactttgtgcatggcatgtcgggaaaaatgtgtgtcagcatttgaaagacgtggatacacagagacactttttccatttgatttttgctggacttactattgaggaatgggaattggcttggcagtactttgtggcaatgaaccggctggaaaacaatgaatgggtgactagtatgtacaataaacgtgaaaggtgggcggaggccttttttcgagaccatttttttggaggaatctgcagcacccaacgatgtgacaggatgcatagaaatcttgaagaaggtattgaccgttatatgaggctgtatgaggtcttgccccggatggagaaaacaattgagcggataagaaatcaggtcctacaggatgattaccaatcacagaactatgaccctgtgtatggcagccacatgcgttgtttgcaggaggagattgggaaaaggttcacccatgacatctttctcttaatcaaggagcagattaattttgagtccaagtttgttattgggccgagaagtattcatccaaaaactggtgcgtcattgatttcgctgatgcaatatggaaagcctgagcggaggtggattgtgtcgtaccagcctgatgaaagcaatccaacattagtgtgttcttgcaaactgttcgagtctgatggaattccctgttgtcacatttttgctgtcatgaaatttgagatgctcacaacattcccagaatcgttggtgaataaaaggtggacaaaagaagccactgttaagacagcaatatcgagttccggtttggttagtaacatgtctgtgcagattgcacggtatggtgaattgatggcacaatgtgctaaaatctgccatattgcttcctatagtgaggaggggtacaatgagatcagagaagctctgagccagctgaccatacgatcccaaaagtacagcagtgagagtgagtttgaaaatggccctttcccaatgtgtgaccacctttgtgtgcatcagacgccgaggacaactaatcttttgattccagtgcatggccatgaaattgtgcgcagatttgcggatggggcaatgccatgtttttttaacaatttttcgtggctactccaaattcaggtgtacgctgtcatccattttccaggggacaggaaattgtttggccacctccacatcatgccgaaaacaagcttcactttagaacatggaattgaattggttgttgtacttgttgagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

829

Amino Acids

96.25

Weight (kDa)

7.52

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 2306
AccB7I CCANNNNNTGG 3 cut(s) 658, 1793, 2288
AccBSI CCGCTC 2 cut(s) 1603, 1837
AccI GTMKAC 1 cut(s) 664
AciI CCGC 7 cut(s) 359, 706, 898, 1460, 1603, 1837, 2315
AclWI GGATC 3 cut(s) 126, 139, 2172
AcoI YGGCCR 2 cut(s) 2290, 2413
AcsI RAATTY 7 cut(s) 172, 632, 883, 1237, 1917, 1949, 2364
AcuI CTGAAG 1 cut(s) 144
AcyI GRCGYC 1 cut(s) 2255
AdeI CACNNNGTG 2 cut(s) 827, 2096
AfiI CCNNNNNNNGG 7 cut(s) 612, 658, 1176, 1661, 1793, 2288, 2368
AflIII ACRYGT 2 cut(s) 1038, 2052
AgsI TTSAA 9 cut(s) 164, 238, 253, 480, 889, 1306, 1538, 2210, 2465
AhlI ACTAGT 2 cut(s) 364, 1430
AjiI CACGTC 1 cut(s) 1312
AjnI CCWGG 1 cut(s) 2392
AleI CACNNNNGTG 1 cut(s) 2241
AluBI AGCT 8 cut(s) 223, 343, 472, 721, 785, 2156, 2167, 2442
AluI AGCT 8 cut(s) 223, 343, 472, 721, 785, 2156, 2167, 2442
Alw21I GWGCWC 1 cut(s) 545
Alw26I GTCTC 2 cut(s) 1318, 1470
Alw44I GTGCAC 1 cut(s) 541
AlwI GGATC 3 cut(s) 126, 139, 2172
AoxI GGCC 5 cut(s) 1464, 1769, 2215, 2290, 2413
ApaLI GTGCAC 1 cut(s) 541
ApeKI GCWGC 2 cut(s) 1500, 1665
ApoI RAATTY 7 cut(s) 172, 632, 883, 1237, 1917, 1949, 2364
ArsI GACNNNNNNTTYG 6 cut(s) 369, 401, 1248, 1280, 1469, 1501
AseI ATTAAT 1 cut(s) 1743
Asp700I GAANNNNTTC 2 cut(s) 320, 1703
AspLEI GCGC 1 cut(s) 2307
AspS9I GGNCC 7 cut(s) 112, 703, 901, 1093, 1618, 1769, 2216
AsuC2I CCSGG 1 cut(s) 1582
AsuHPI GGTGA 8 cut(s) 839, 1013, 1159, 1207, 1438, 1699, 1996, 2090
AsuII TTCGAA 1 cut(s) 685
AvaII GGWCC 5 cut(s) 112, 703, 901, 1093, 1618
AxyI CCTNAGG 1 cut(s) 698
BaeGI GKGCMC 1 cut(s) 545
BalI TGGCCA 2 cut(s) 2292, 2415
BamHI GGATCC 1 cut(s) 131
BanII GRGCYC 1 cut(s) 415
BbsI GAAGAC 1 cut(s) 382
Bbv12I GWGCWC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 1512, 1677
BccI CCATC 8 cut(s) 52, 172, 845, 962, 1579, 1907, 2080, 2312
BcgI CGANNNNNNTGC 4 cut(s) 974, 1008, 1885, 1919
BciT130I CCWGG 1 cut(s) 2394
BciVI GTATCC 1 cut(s) 1309
BclI TGATCA 1 cut(s) 1197
BcnI CCSGG 1 cut(s) 1582
BcoDI GTCTC 2 cut(s) 1318, 1470
BcuI ACTAGT 2 cut(s) 364, 1430
BfaI CTAG 4 cut(s) 311, 365, 1254, 1431
BfmI CTRYAG 3 cut(s) 1498, 1622, 2122
BfuI GTATCC 1 cut(s) 1309
BisI GCNGC 2 cut(s) 1501, 1666
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 2 cut(s) 1502, 1667
BmcAI AGTACT 3 cut(s) 95, 139, 1388
Bme1390I CCNGG 2 cut(s) 1582, 2394
Bme18I GGWCC 5 cut(s) 112, 703, 901, 1093, 1618
BmgBI CACGTC 1 cut(s) 1312
BmgT120I GGNCC 7 cut(s) 112, 703, 901, 1093, 1618, 1769, 2216
BmiI GGNNCC 5 cut(s) 114, 133, 704, 902, 903
BmrFI CCNGG 2 cut(s) 1582, 2394
BmsI GCATC 9 cut(s) 282, 682, 737, 847, 1204, 1512, 1806, 1947, 2257
BoxI GACNNNNGTC 1 cut(s) 465
BpiI GAAGAC 1 cut(s) 382
BpmI CTGGAG 1 cut(s) 807
Bpu10I CCTNAGC 2 cut(s) 669, 1833
Bpu1102I GCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 685
BpuMI CCSGG 1 cut(s) 1582
BsaHI GRCGYC 1 cut(s) 2255
BsaI GGTCTC 1 cut(s) 1470
BsaJI CCNNGG 6 cut(s) 1053, 1089, 1247, 1580, 2258, 2393
BsaWI WCCGGW 1 cut(s) 2036
Bsc4I CCNNNNNNNGG 7 cut(s) 612, 658, 1176, 1661, 1793, 2288, 2368
Bse118I RCCGGY 1 cut(s) 1404
Bse1I ACTGG 3 cut(s) 135, 1798, 2282
Bse21I CCTNAGG 1 cut(s) 698
Bse3DI GCAATG 4 cut(s) 900, 1231, 1404, 2331
BseBI CCWGG 1 cut(s) 2394
BseDI CCNNGG 6 cut(s) 1053, 1089, 1247, 1580, 2258, 2393
BseGI GGATG 9 cut(s) 856, 862, 885, 1527, 1590, 1633, 1783, 2323, 2382
BseLI CCNNNNNNNGG 7 cut(s) 612, 658, 1176, 1661, 1793, 2288, 2368
BseMI GCAATG 4 cut(s) 900, 1231, 1404, 2331
BseMII CTCAG 6 cut(s) 642, 660, 712, 731, 1824, 2150
BseNI ACTGG 3 cut(s) 135, 1798, 2282
BseRI GAGGAG 4 cut(s) 77, 170, 1703, 2144
BseSI GKGCMC 1 cut(s) 545
BseXI GCAGC 2 cut(s) 1512, 1677
BsgI GTGCAG 1 cut(s) 2081
BshFI GGCC 5 cut(s) 1466, 1771, 2217, 2292, 2415
BsiHKAI GWGCWC 1 cut(s) 545
BsiSI CCGG 3 cut(s) 1405, 1582, 2037
BslFI GGGAC 4 cut(s) 375, 716, 914, 2411
BslI CCNNNNNNNGG 7 cut(s) 612, 658, 1176, 1661, 1793, 2288, 2368
BsmAI GTCTC 2 cut(s) 1318, 1470
BsmFI GGGAC 4 cut(s) 375, 716, 914, 2411
BsnI GGCC 5 cut(s) 1466, 1771, 2217, 2292, 2415
Bso31I GGTCTC 1 cut(s) 1470
Bsp119I TTCGAA 1 cut(s) 685
Bsp1286I GDGCHC 2 cut(s) 415, 545
Bsp1407I TGTACA 2 cut(s) 203, 1437
Bsp143I GATC 5 cut(s) 131, 689, 1197, 2145, 2177
Bsp1720I GCTNAGC 1 cut(s) 717
BspACI CCGC 7 cut(s) 359, 706, 898, 1460, 1603, 1837, 2315
BspANI GGCC 5 cut(s) 1466, 1771, 2217, 2292, 2415
BspCNI CTCAG 6 cut(s) 641, 661, 711, 730, 1825, 2151
BspHI TCATGA 1 cut(s) 1944
BspLI GGNNCC 5 cut(s) 114, 133, 704, 902, 903
BspMAI CTGCAG 1 cut(s) 1502
BspPI GGATC 3 cut(s) 126, 139, 2172
BspQI GCTCTTC 1 cut(s) 403
BspT104I TTCGAA 1 cut(s) 685
BspTNI GGTCTC 1 cut(s) 1470
BsrBI CCGCTC 2 cut(s) 1603, 1837
BsrDI GCAATG 4 cut(s) 900, 1231, 1404, 2331
BsrFI RCCGGY 1 cut(s) 1404
BsrGI TGTACA 2 cut(s) 203, 1437
BsrI ACTGG 3 cut(s) 135, 1798, 2282
BssAI RCCGGY 1 cut(s) 1404
BssECI CCNNGG 6 cut(s) 1053, 1089, 1247, 1580, 2258, 2393
BssMI GATC 5 cut(s) 131, 689, 1197, 2145, 2177
BssNI GRCGYC 1 cut(s) 2255
BssT1I CCWWGG 2 cut(s) 1053, 1247
Bst2UI CCWGG 1 cut(s) 2394
Bst4CI ACNGT 9 cut(s) 93, 356, 381, 864, 1093, 1553, 1902, 2014, 2073
Bst6I CTCTTC 2 cut(s) 177, 403
BstACI GRCGYC 1 cut(s) 2255
BstAPI GCANNNNNTGC 1 cut(s) 2096
BstAUI TGTACA 2 cut(s) 203, 1437
BstBI TTCGAA 1 cut(s) 685
BstC8I GCNNGC 3 cut(s) 948, 1049, 2165
BstDEI CTNAG 7 cut(s) 473, 628, 669, 698, 717, 1833, 2159
BstDSI CCRYGG 1 cut(s) 1089
BstF5I GGATG 9 cut(s) 856, 862, 885, 1527, 1590, 1633, 1783, 2323, 2382
BstHHI GCGC 1 cut(s) 2307
BstKTI GATC 5 cut(s) 134, 692, 1200, 2148, 2180
BstMAI GTCTC 2 cut(s) 1318, 1470
BstMBI GATC 5 cut(s) 131, 689, 1197, 2145, 2177
BstMWI GCNNNNNNNGC 6 cut(s) 403, 970, 1681, 2096, 2254, 2321
BstNI CCWGG 1 cut(s) 2394
BstNSI RCATGY 6 cut(s) 756, 1042, 1158, 1280, 1675, 2056
BstPAI GACNNNNGTC 1 cut(s) 465
BstSCI CCNGG 2 cut(s) 1580, 2392
BstSFI CTRYAG 3 cut(s) 1498, 1622, 2122
BstSLI GKGCMC 1 cut(s) 545
BstV1I GCAGC 2 cut(s) 1512, 1677
BstV2I GAAGAC 1 cut(s) 382
BstX2I RGATCY 1 cut(s) 131
BstXI CCANNNNNNTGG 1 cut(s) 1487
BstYI RGATCY 1 cut(s) 131
Bsu36I CCTNAGG 1 cut(s) 698
BsuI GTATCC 1 cut(s) 1309
BsuRI GGCC 5 cut(s) 1466, 1771, 2217, 2292, 2415
BtgI CCRYGG 1 cut(s) 1089
BtrI CACGTC 1 cut(s) 1312
BtsCI GGATG 9 cut(s) 856, 862, 885, 1527, 1590, 1633, 1783, 2323, 2382
BtsI GCAGTG 3 cut(s) 545, 1030, 2200
BtsIMutI CAGTG 9 cut(s) 331, 520, 543, 545, 931, 1030, 2010, 2200, 2289
Cac8I GCNNGC 3 cut(s) 948, 1049, 2165
CciI TCATGA 1 cut(s) 1944
CfoI GCGC 1 cut(s) 2307
Cfr10I RCCGGY 1 cut(s) 1404
Cfr13I GGNCC 7 cut(s) 112, 703, 901, 1093, 1618, 1769, 2216
CseI GACGC 2 cut(s) 1788, 2263
CspCI CAANNNNNGTGG 2 cut(s) 1658, 1693
DdeI CTNAG 7 cut(s) 473, 628, 669, 698, 717, 1833, 2159
DpnI GATC 5 cut(s) 133, 691, 1199, 2147, 2179
DpnII GATC 5 cut(s) 131, 689, 1197, 2145, 2177
DraIII CACNNNGTG 2 cut(s) 827, 2096
EaeI YGGCCR 2 cut(s) 2290, 2413
Eam1104I CTCTTC 2 cut(s) 177, 403
EarI CTCTTC 2 cut(s) 177, 403
EciI GGCGGA 1 cut(s) 1475
Eco130I CCWWGG 2 cut(s) 1053, 1247
Eco147I AGGCCT 1 cut(s) 1466
Eco24I GRGCYC 1 cut(s) 415
Eco31I GGTCTC 1 cut(s) 1470
Eco47I GGWCC 5 cut(s) 112, 703, 901, 1093, 1618
Eco57I CTGAAG 1 cut(s) 144
Eco81I CCTNAGG 1 cut(s) 698
EcoO109I RGGNCCY 2 cut(s) 901, 1618
EcoRI GAATTC 2 cut(s) 632, 1917
EcoRII CCWGG 1 cut(s) 2392
EcoT14I CCWWGG 2 cut(s) 1053, 1247
EcoT22I ATGCAT 3 cut(s) 730, 1111, 1527
EcoT38I GRGCYC 1 cut(s) 415
ErhI CCWWGG 2 cut(s) 1053, 1247
FalI AAGNNNNNCTT 2 cut(s) 2431, 2463
FaqI GGGAC 4 cut(s) 375, 716, 914, 2411
FauI CCCGC 2 cut(s) 352, 891
FauNDI CATATG 1 cut(s) 1138
FbaI TGATCA 1 cut(s) 1197
FblI GTMKAC 1 cut(s) 664
Fnu4HI GCNGC 2 cut(s) 1501, 1666
FokI GGATG 9 cut(s) 863, 869, 892, 1534, 1597, 1640, 1770, 2330, 2369
FriOI GRGCYC 1 cut(s) 415
Fsp4HI GCNGC 2 cut(s) 1501, 1666
FspBI CTAG 4 cut(s) 311, 365, 1254, 1431
FspI TGCGCA 1 cut(s) 2306
GlaI GCGC 1 cut(s) 2306
GluI GCNGC 2 cut(s) 1501, 1666
GsuI CTGGAG 1 cut(s) 807
HaeIII GGCC 5 cut(s) 1466, 1771, 2217, 2292, 2415
HapII CCGG 3 cut(s) 1405, 1582, 2037
HgaI GACGC 2 cut(s) 1788, 2263
HhaI GCGC 1 cut(s) 2307
Hin1I GRCGYC 1 cut(s) 2255
Hin6I GCGC 1 cut(s) 2305
HinP1I GCGC 1 cut(s) 2305
HincII GTYRAC 2 cut(s) 494, 981
HindII GTYRAC 2 cut(s) 494, 981
HindIII AAGCTT 1 cut(s) 2440
HinfI GANTC 5 cut(s) 1494, 1751, 1907, 1976, 2278
HpaI GTTAAC 1 cut(s) 981
HpaII CCGG 3 cut(s) 1405, 1582, 2037
HphI GGTGA 8 cut(s) 839, 1013, 1159, 1207, 1438, 1699, 1996, 2090
Hpy188I TCNGA 8 cut(s) 151, 631, 1011, 1164, 1912, 2150, 2160, 2253
Hpy188III TCNNGA 5 cut(s) 34, 1282, 1475, 1535, 1945
Hpy99I CGWCG 2 cut(s) 558, 1070
HpyAV CCTTC 5 cut(s) 122, 247, 310, 442, 1535
HpyCH4III ACNGT 9 cut(s) 93, 356, 381, 864, 1093, 1553, 1902, 2014, 2073
HpyCH4IV ACGT 2 cut(s) 1311, 1447
HpyF10VI GCNNNNNNNGC 6 cut(s) 403, 970, 1681, 2096, 2254, 2321
HpyF3I CTNAG 7 cut(s) 473, 628, 669, 698, 717, 1833, 2159
HpySE526I ACGT 2 cut(s) 1311, 1447
Hsp92I GRCGYC 1 cut(s) 2255
HspAI GCGC 1 cut(s) 2305
KflI GGGWCCC 1 cut(s) 901
Ksp22I TGATCA 1 cut(s) 1197
KspAI GTTAAC 1 cut(s) 981
Kzo9I GATC 5 cut(s) 131, 689, 1197, 2145, 2177
LguI GCTCTTC 1 cut(s) 403
LmnI GCTCC 1 cut(s) 1735
Lsp1109I GCAGC 2 cut(s) 1512, 1677
LweI GCATC 9 cut(s) 282, 682, 737, 847, 1204, 1512, 1806, 1947, 2257
MaeI CTAG 4 cut(s) 311, 365, 1254, 1431
MaeII ACGT 2 cut(s) 1311, 1447
MaeIII GTNAC 7 cut(s) 871, 1231, 1426, 1514, 1928, 2048, 2231
MalI GATC 5 cut(s) 133, 691, 1199, 2147, 2179
MbiI CCGCTC 2 cut(s) 1603, 1837
MboI GATC 5 cut(s) 131, 689, 1197, 2145, 2177
MboII GAAGA 6 cut(s) 137, 194, 387, 420, 699, 1550
MfeI CAATTG 3 cut(s) 463, 480, 1596
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 2 cut(s) 415, 545
MlsI TGGCCA 2 cut(s) 2292, 2415
MluNI TGGCCA 2 cut(s) 2292, 2415
MlyI GAGTC 2 cut(s) 1760, 1916
MmeI TCCRAC 2 cut(s) 784, 1901
Mox20I TGGCCA 2 cut(s) 2292, 2415
Mph1103I ATGCAT 3 cut(s) 730, 1111, 1527
MroXI GAANNNNTTC 2 cut(s) 320, 1703
MscI TGGCCA 2 cut(s) 2292, 2415
MseI TTAA 8 cut(s) 267, 570, 723, 980, 1727, 1743, 2016, 2340
MslI CAYNNNNRTG 5 cut(s) 651, 1885, 2057, 2241, 2292
Msp20I TGGCCA 2 cut(s) 2292, 2415
MspA1I CMGCKG 1 cut(s) 2167
MspI CCGG 3 cut(s) 1405, 1582, 2037
MspR9I CCNGG 2 cut(s) 1582, 2394
MunI CAATTG 3 cut(s) 463, 480, 1596
MvaI CCWGG 1 cut(s) 2394
MwoI GCNNNNNNNGC 6 cut(s) 403, 970, 1681, 2096, 2254, 2321
NciI CCSGG 1 cut(s) 1582
NdeI CATATG 1 cut(s) 1138
NdeII GATC 5 cut(s) 131, 689, 1197, 2145, 2177
NlaIV GGNNCC 5 cut(s) 114, 133, 704, 902, 903
NmeAIII GCCGAG 2 cut(s) 1797, 2283
NmuCI GTSAC 4 cut(s) 1426, 1514, 1928, 2231
NsbI TGCGCA 1 cut(s) 2306
NsiI ATGCAT 3 cut(s) 730, 1111, 1527
NspI RCATGY 6 cut(s) 756, 1042, 1158, 1280, 1675, 2056
NspV TTCGAA 1 cut(s) 685
OliI CACNNNNGTG 1 cut(s) 2241
PagI TCATGA 1 cut(s) 1944
PceI AGGCCT 1 cut(s) 1466
PciI ACATGT 2 cut(s) 1038, 2052
PciSI GCTCTTC 1 cut(s) 403
PcsI WCGNNNNNNNCGW 1 cut(s) 682
PdmI GAANNNNTTC 2 cut(s) 320, 1703
PfeI GAWTC 3 cut(s) 1494, 1976, 2278
PflMI CCANNNNNTGG 3 cut(s) 658, 1793, 2288
PkrI GCNGC 2 cut(s) 1502, 1667
PleI GAGTC 2 cut(s) 1759, 1915
PpsI GAGTC 2 cut(s) 1759, 1915
PpuMI RGGWCCY 2 cut(s) 901, 1618
PscI ACATGT 2 cut(s) 1038, 2052
PshAI GACNNNNGTC 1 cut(s) 465
PshBI ATTAAT 1 cut(s) 1743
Psp5II RGGWCCY 2 cut(s) 901, 1618
Psp6I CCWGG 1 cut(s) 2392
PspGI CCWGG 1 cut(s) 2392
PspN4I GGNNCC 5 cut(s) 114, 133, 704, 902, 903
PspPI GGNCC 7 cut(s) 112, 703, 901, 1093, 1618, 1769, 2216
PspPPI RGGWCCY 2 cut(s) 901, 1618
PstI CTGCAG 1 cut(s) 1502
PsuI RGATCY 1 cut(s) 131
PvuII CAGCTG 1 cut(s) 2167
RseI CAYNNNNRTG 5 cut(s) 651, 1885, 2057, 2241, 2292
SapI GCTCTTC 1 cut(s) 403
SaqAI TTAA 8 cut(s) 267, 570, 723, 980, 1727, 1743, 2016, 2340
SatI GCNGC 2 cut(s) 1501, 1666
Sau3AI GATC 5 cut(s) 131, 689, 1197, 2145, 2177
Sau96I GGNCC 7 cut(s) 112, 703, 901, 1093, 1618, 1769, 2216
ScaI AGTACT 3 cut(s) 95, 139, 1388
SchI GAGTC 2 cut(s) 1760, 1916
ScrFI CCNGG 2 cut(s) 1582, 2394
SduI GDGCHC 2 cut(s) 415, 545
SfaNI GCATC 9 cut(s) 282, 682, 737, 847, 1204, 1512, 1806, 1947, 2257
SfcI CTRYAG 3 cut(s) 1498, 1622, 2122
SfuI TTCGAA 1 cut(s) 685
SinI GGWCC 5 cut(s) 112, 703, 901, 1093, 1618
SmiMI CAYNNNNRTG 5 cut(s) 651, 1885, 2057, 2241, 2292
SpeI ACTAGT 2 cut(s) 364, 1430
SseBI AGGCCT 1 cut(s) 1466
SsiI CCGC 7 cut(s) 359, 706, 898, 1460, 1603, 1837, 2315
SspMI CTAG 4 cut(s) 311, 365, 1254, 1431
StuI AGGCCT 1 cut(s) 1466
StyD4I CCNGG 2 cut(s) 1580, 2392
StyI CCWWGG 2 cut(s) 1053, 1247
TaaI ACNGT 9 cut(s) 93, 356, 381, 864, 1093, 1553, 1902, 2014, 2073
TaiI ACGT 2 cut(s) 1314, 1450
TatI WGTACW 8 cut(s) 93, 137, 203, 618, 1386, 1437, 2187, 2476
TfiI GAWTC 3 cut(s) 1494, 1976, 2278
Tru1I TTAA 8 cut(s) 267, 570, 723, 980, 1727, 1743, 2016, 2340
Tru9I TTAA 8 cut(s) 267, 570, 723, 980, 1727, 1743, 2016, 2340
TscAI CASTG 9 cut(s) 331, 520, 545, 550, 931, 1030, 2017, 2200, 2289
TseFI GTSAC 4 cut(s) 1426, 1514, 1928, 2231
TseI GCWGC 2 cut(s) 1500, 1665
Tsp45I GTSAC 4 cut(s) 1426, 1514, 1928, 2231
TspDTI ATGAA 9 cut(s) 625, 896, 1137, 1415, 1434, 1772, 1881, 1961, 2310
TspRI CASTG 9 cut(s) 331, 520, 545, 550, 931, 1030, 2017, 2200, 2289
Van91I CCANNNNNTGG 3 cut(s) 658, 1793, 2288
VneI GTGCAC 1 cut(s) 541
VpaK11BI GGWCC 5 cut(s) 112, 703, 901, 1093, 1618
VspI ATTAAT 1 cut(s) 1743
XapI RAATTY 7 cut(s) 172, 632, 883, 1237, 1917, 1949, 2364
XceI RCATGY 6 cut(s) 756, 1042, 1158, 1280, 1675, 2056
XmiI GTMKAC 1 cut(s) 664
XmnI GAANNNNTTC 2 cut(s) 320, 1703
XspI CTAG 4 cut(s) 311, 365, 1254, 1431
ZrmI AGTACT 3 cut(s) 95, 139, 1388
Zsp2I ATGCAT 3 cut(s) 730, 1111, 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.