Rroxscaffold_7G00196700

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000074
Physical Location & Seq
Reverse (-)
39851688 .. 39855898
4211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00196700.1

Sequence Viewer

Length: 810 bp
ATGAATGACCTCCGCCGTCTCCACCACCCCACCGCCCGCTCCGTCTTCCTCGCGTCGACGTTGGCACCGGCGGCACACGCGAGTGTGTTTGATGAGAATGGGAAGCTTCTAGGTTCGTCTAGCAGTCCCATTCAGTTTTGGATGGACCATGGAGCTGTAGAACAAGCTGAAAGGATCGATTCACGCAACTCACCCGTCCCGCAAGATCTTGTGGTGGAGCTCTTTCCCCGAGATGCAGCCTCCAAAGCTTTTATGGGTGAAAGAAAATCTGCCGAATCTTGCAAAACAATGAGAAAGATTCTCGAAACATGGAAGCTTGTGGATGAGATGATTTGCGAGACGGATGTTGATGGTGATCATTCGGAAATGGTTAGAAGAATCGAAGCAGTGATCGAGTGGATCGAGTGCCGATGGATGTTGGACGGTGATGATTCGTTTGAGGTTGTTCGGAGAAAAGAAAGATTATGTTTGTGTGTTGTAATTTATCCCTCCCGGACCACGGGTTATGCTTTTATTGAGTTTGAAGATCCACGTGATGCCGATGATGCGATTTATGGCCGGGATGGTTGCAACTTTGATGGGTATCGCTTACGGGTTGAACTAGCACATGGTAGACGTGGATATTCATCATCGACAGATCGATTCGGTAGTTACGGTCGTAGTAGCGATGAGACGTGGAGCTTCCCGCCGTTCGACTATCGTGTGTCGGTCACCGGATTACCTCGCTTCGCTGGCGGGATCCGAAGGATCACATGCGTCAAGCCGGAGATGTTTGTTTTTCGCAAGTGTTCCGTGACCGCCGTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 ko04657 ko05168 map03040 map04657 map05168
Pfam Domains
Protein Families
RRM_1

Protein Analysis

269

Amino Acids

30.59

Weight (kDa)

5.77

Isoelectric Point (pI)

51.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 164 - 198 8.8e-06 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000074)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21861 FvH4_2g06391 FvH4_2g06392 FvH4_2g14572 FvH4_2g27932 FvH4_3g22671 FvH4_3g22671 FvH4_4g04121 FvH4_4g09442 FvH4_4g15981 FvH4_4g16251 FvH4_6g17111 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g03431 FvH4_7g05771 FvH4_7g07132 FvH4_7g08581 FvH4_7g10252
prunus_persica Prupe.2G034100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0343281 RchiOBHm_Chr1g0347821 RchiOBHm_Chr2g0100541 RchiOBHm_Chr3g0491041 RchiOBHm_Chr4g0423001 RchiOBHm_Chr4g0432011 RchiOBHm_Chr4g0434601 RchiOBHm_Chr5g0039441 RchiOBHm_Chr5g0042361 RchiOBHm_Chr5g0043531 RchiOBHm_Chr5g0058531 RchiOBHm_Chr5g0079421 RchiOBHm_Chr6g0246161 RchiOBHm_Chr6g0268121 RchiOBHm_Chr7g0189611 RchiOBHm_Chr7g0227541
rosa_laevigata RLG00000002090 RLG00000006173 RLG00000007766 RLG00000008219 RLG00000010624 RLG00000011272 RLG00000012843 RLG00000012844 RLG00000013648 RLG00000013801 RLG00000013802 RLG00000017300 RLG00000018444 RLG00000018720 RLG00000020793 RLG00000022697 RLG00000022804 RLG00000022805 RLG00000033143 RLG00000033144 RLG00000033915 RLG00000033917 RLG00000033919 RLG00000034190 RLG00000034403
rosa_multiflora Rmu_co7984152.1_g000001 Rmu_co8352885.1_g000001 Rmu_co8410147.1_g000001 Rmu_co8473903.1_g000001 Rmu_co8473903.1_g000002 Rmu_sc0000077.1_g000044 Rmu_sc0000279.1_g000050 Rmu_sc0000670.1_g000017 Rmu_sc0000837.1_g000064 Rmu_sc0000837.1_g000065 Rmu_sc0000894.1_g000068 Rmu_sc0000931.1_g000006 Rmu_sc0001103.1_g000027 Rmu_sc0001103.1_g000028 Rmu_sc0001955.1_g000017 Rmu_sc0002791.1_g000004 Rmu_sc0003047.1_g000009 Rmu_sc0003047.1_g000010 Rmu_sc0003063.1_g000011 Rmu_sc0003179.1_g000016 Rmu_sc0003179.1_g000017 Rmu_sc0003226.1_g000022 Rmu_sc0004051.1_g000001 Rmu_sc0004482.1_g000011 Rmu_sc0005394.1_g000008 Rmu_sc0005394.1_g000009 Rmu_sc0005712.1_g000027 Rmu_sc0006514.1_g000025 Rmu_sc0006514.1_g000026 Rmu_sc0006675.1_g000007 Rmu_sc0007180.1_g000003 Rmu_sc0007180.1_g000004 Rmu_sc0007877.1_g000020 Rmu_sc0011079.1_g000009 Rmu_sc0031869.1_g000001 Rmu_sc0031870.1_g000002 Rmu_ssc0000158.1_g000017 Rmu_ssc0000161.1_g000025 Rmu_ssc0000161.1_g000026 Rmu_ssc0000171.1_g000002 Rmu_ssc0000171.1_g000008 Rmu_ssc0000387.1_g000014 Rmu_ssc0000400.1_g000101
rosa_roxburghii Rroxscaffold_1G00000400 Rroxscaffold_1G00004080 Rroxscaffold_1G00009710 Rroxscaffold_1G00009720 Rroxscaffold_1G00024410 Rroxscaffold_1G00031840 Rroxscaffold_1G00040580 Rroxscaffold_1G00041710 Rroxscaffold_1G00041760 Rroxscaffold_2G00118130 Rroxscaffold_2G00118140 Rroxscaffold_2G00118640 Rroxscaffold_2G00140930 Rroxscaffold_3G00226560 Rroxscaffold_4G00313790 Rroxscaffold_4G00321730 Rroxscaffold_5G00348100 Rroxscaffold_5G00349980 Rroxscaffold_5G00350840 Rroxscaffold_7G00164330 Rroxscaffold_7G00196700
rosa_rugosa Rorug01G0094800 Rorug01G0106400 Rorug01G0106400 Rorug02G0362800 Rorug02G0564700 Rorug02G0564700 Rorug02G0570400 Rorug03G0287500 Rorug03G0329600 Rorug03G0332900 Rorug03G0333000 Rorug03G0343100 Rorug04G0031600 Rorug04G0031700 Rorug04G0031800 Rorug04G0055600 Rorug04G0065700 Rorug04G0189800 Rorug05G0103100 Rorug05G0103200 Rorug05G0106800 Rorug05G0179100 Rorug05G0179600 Rorug06G0008300 Rorug06G0184200 Rorug06G0184300 Rorug07G0181900 Rorug07G0187700 Rorug07G0283400
rosa_samantha Rh1AG090200 Rh1AG168900 Rh1CG039900 Rh1CG040000 Rh1CG055300 Rh1CG156300 Rh1DG029400 Rh1DG029500 Rh1DG029600 Rh1DG059200 Rh1DG065400 Rh1DG177000 Rh2AG354800 Rh2AG641900 Rh2AG642000 Rh2AG647200 Rh2AG647300 Rh2BG141800 Rh2BG260500 Rh2BG305300 Rh2BG336200 Rh2BG336300 Rh2BG336400 Rh2BG593800 Rh2BG593900 Rh2CG144100 Rh2CG299600 Rh2CG299700 Rh2DG143500 Rh2DG336800 Rh2DG571700 Rh2DG581400 Rh3AG246400 Rh3AG295600 Rh3BG122800 Rh3BG264600 Rh3BG310900 Rh3BG348800 Rh3CG308000 Rh3DG285900 Rh3DG304600 Rh4AG134700 Rh4AG164700 Rh4AG164800 Rh4AG164900 Rh4AG249400 Rh4AG249500 Rh4AG249600 Rh4AG249700 Rh4AG336400 Rh4AG368500 Rh4BG111500 Rh4BG130000 Rh4BG130100 Rh4BG130200 Rh4BG254800 Rh4BG254900 Rh4BG255000 Rh4BG388500 Rh4CG155300 Rh4CG155400 Rh4DG058400 Rh4DG058500 Rh4DG058600 Rh4DG059300 Rh4DG120300 Rh4DG120400 Rh4DG338900 Rh4DG374800 Rh4DG374900 Rh4DG375000 Rh5AG195100 Rh5AG266000 Rh5AG266400 Rh5AG305300 Rh5AG365400 Rh5AG375400 Rh5BG270600 Rh5CG062000 Rh5CG213600 Rh5CG229700 Rh5CG248000 Rh5CG248200 Rh5CG497300 Rh5CG497400 Rh5CG559300 Rh5DG179800 Rh5DG179900 Rh5DG239100 Rh5DG239200 Rh5DG278500 Rh5DG300000 Rh5DG300100 Rh5DG307900 Rh6AG173600 Rh6AG197900 Rh6AG315200 Rh6BG067100 Rh6BG076700 Rh6BG076800 Rh6BG101100 Rh6BG101200 Rh6BG200000 Rh6BG231600 Rh6BG324600 Rh6CG172800 Rh6CG200900 Rh6CG201000 Rh6CG235000 Rh6CG276000 Rh6CG420300 Rh6CG420400 Rh6DG498900 Rh7AG178800 Rh7AG275200 Rh7AG328700 Rh7AG328800 Rh7AG328900 Rh7AG353700 Rh7AG353800 Rh7AG367500 Rh7AG367600 Rh7AG394900 Rh7BG178500 Rh7BG321900 Rh7CG048800 Rh7CG346100 Rh7CG346200 Rh7CG346300 Rh7CG371300 Rh7CG385900 Rh7CG425400 Rh7DG106500 Rh7DG106600 Rh7DG352900 Rh7DG353000 Rh7DG361500 Rh7DG361600 Rh7DG362400 Rh7DG362500 Rh7DG363300
rosa_wichuraiana Rw0G002270 Rw0G002760 Rw0G019200 Rw1G000250 Rw1G008950 Rw1G010390 Rw1G012150 Rw1G039080 Rw2G001980 Rw2G003180 Rw2G003190 Rw4G008560 Rw4G010220 Rw4G012150 Rw5G005520 Rw5G009100 Rw5G024930 Rw5G035130 Rw5G047260 Rw5G048530 Rw6G007560 Rw6G016630 Rw6G041510 Rw7G030450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 64
AccBSI CCGCTC 1 cut(s) 39
AccI GTMKAC 2 cut(s) 56, 613
AccII CGCG 2 cut(s) 53, 80
AciI CCGC 8 cut(s) 13, 33, 37, 71, 200, 686, 735, 798
AclWI GGATC 6 cut(s) 182, 407, 521, 733, 746, 755
AcoI YGGCCR 1 cut(s) 556
AcvI CACGTG 1 cut(s) 533
AfiI CCNNNNNNNGG 1 cut(s) 499
AgsI TTSAA 2 cut(s) 524, 599
AjiI CACGTC 2 cut(s) 617, 675
AleI CACNNNNGTG 1 cut(s) 81
AluBI AGCT 7 cut(s) 106, 155, 167, 220, 248, 316, 681
AluI AGCT 7 cut(s) 106, 155, 167, 220, 248, 316, 681
Alw21I GWGCWC 1 cut(s) 222
Alw26I GTCTC 3 cut(s) 23, 332, 665
AlwI GGATC 6 cut(s) 182, 407, 521, 733, 746, 755
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 145, 495
AsuC2I CCSGG 2 cut(s) 493, 560
AsuHPI GGTGA 5 cut(s) 183, 269, 365, 437, 703
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 2 cut(s) 145, 495
BamHI GGATCC 1 cut(s) 738
BanI GGYRCC 1 cut(s) 64
BanII GRGCYC 1 cut(s) 222
BbrPI CACGTG 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 222
BbvI GCAGC 1 cut(s) 248
BccI CCATC 5 cut(s) 136, 344, 405, 557, 572
BceAI ACGGC 2 cut(s) 673, 785
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 2 cut(s) 493, 560
BcoDI GTCTC 3 cut(s) 23, 332, 665
BfaI CTAG 3 cut(s) 110, 120, 602
BfmI CTRYAG 1 cut(s) 156
BglII AGATCT 1 cut(s) 205
BisI GCNGC 2 cut(s) 72, 237
BlsI GCNGC 2 cut(s) 73, 238
Bme1390I CCNGG 2 cut(s) 493, 560
Bme18I GGWCC 2 cut(s) 145, 495
BmeT110I CYCGRG 1 cut(s) 228
BmgBI CACGTC 2 cut(s) 617, 675
BmgT120I GGNCC 2 cut(s) 145, 495
BmiI GGNNCC 2 cut(s) 66, 740
BmrFI CCNGG 2 cut(s) 493, 560
BmsI GCATC 3 cut(s) 223, 526, 535
BpiI GAAGAC 1 cut(s) 37
BpuMI CCSGG 2 cut(s) 493, 560
Bsa29I ATCGAT 2 cut(s) 177, 640
BsaAI YACGTR 1 cut(s) 533
BsaBI GATNNNNATC 3 cut(s) 354, 582, 625
BsaJI CCNNGG 3 cut(s) 148, 498, 801
BsaWI WCCGGW 1 cut(s) 713
Bsc4I CCNNNNNNNGG 1 cut(s) 499
Bse118I RCCGGY 1 cut(s) 67
Bse8I GATNNNNATC 3 cut(s) 354, 582, 625
BseCI ATCGAT 2 cut(s) 177, 640
BseDI CCNNGG 3 cut(s) 148, 498, 801
BseGI GGATG 5 cut(s) 147, 328, 349, 420, 568
BseJI GATNNNNATC 3 cut(s) 354, 582, 625
BseLI CCNNNNNNNGG 1 cut(s) 499
BseXI GCAGC 1 cut(s) 248
Bsh1236I CGCG 2 cut(s) 53, 80
Bsh1285I CGRYCG 1 cut(s) 658
BshFI GGCC 1 cut(s) 558
BshNI GGYRCC 1 cut(s) 64
BshVI ATCGAT 2 cut(s) 177, 640
BsiEI CGRYCG 1 cut(s) 658
BsiHKAI GWGCWC 1 cut(s) 222
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 5 cut(s) 68, 493, 559, 714, 764
BslFI GGGAC 2 cut(s) 111, 182
BslI CCNNNNNNNGG 1 cut(s) 499
BsmAI GTCTC 3 cut(s) 23, 332, 665
BsmBI CGTCTC 3 cut(s) 23, 332, 665
BsmFI GGGAC 2 cut(s) 111, 182
BsnI GGCC 1 cut(s) 558
BsoBI CYCGRG 1 cut(s) 228
Bsp1286I GDGCHC 1 cut(s) 222
Bsp143I GATC 9 cut(s) 174, 205, 355, 390, 399, 526, 637, 738, 747
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 8 cut(s) 13, 33, 37, 71, 200, 686, 735, 798
BspANI GGCC 1 cut(s) 558
BspDI ATCGAT 2 cut(s) 177, 640
BspFNI CGCG 2 cut(s) 53, 80
BspLI GGNNCC 2 cut(s) 66, 740
BspPI GGATC 6 cut(s) 182, 407, 521, 733, 746, 755
BspT107I GGYRCC 1 cut(s) 64
BsrBI CCGCTC 1 cut(s) 39
BsrFI RCCGGY 1 cut(s) 67
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 3 cut(s) 148, 498, 801
BssMI GATC 9 cut(s) 174, 205, 355, 390, 399, 526, 637, 738, 747
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 2 cut(s) 425, 656
BstBAI YACGTR 1 cut(s) 533
BstC8I GCNNGC 2 cut(s) 37, 733
BstDSI CCRYGG 3 cut(s) 148, 498, 801
BstEII GGTNACC 1 cut(s) 709
BstF5I GGATG 5 cut(s) 147, 328, 349, 420, 568
BstFNI CGCG 2 cut(s) 53, 80
BstKTI GATC 9 cut(s) 177, 208, 358, 393, 402, 529, 640, 741, 750
BstMAI GTCTC 3 cut(s) 23, 332, 665
BstMBI GATC 9 cut(s) 174, 205, 355, 390, 399, 526, 637, 738, 747
BstMCI CGRYCG 1 cut(s) 658
BstMWI GCNNNNNNNGC 5 cut(s) 71, 77, 245, 545, 732
BstNSI RCATGY 1 cut(s) 756
BstPI GGTNACC 1 cut(s) 709
BstSCI CCNGG 2 cut(s) 491, 558
BstSFI CTRYAG 1 cut(s) 156
BstUI CGCG 2 cut(s) 53, 80
BstV1I GCAGC 1 cut(s) 248
BstV2I GAAGAC 1 cut(s) 37
BstX2I RGATCY 3 cut(s) 205, 526, 738
BstYI RGATCY 3 cut(s) 205, 526, 738
Bsu15I ATCGAT 2 cut(s) 177, 640
BsuRI GGCC 1 cut(s) 558
BsuTUI ATCGAT 2 cut(s) 177, 640
BtgI CCRYGG 3 cut(s) 148, 498, 801
BtgZI GCGATG 1 cut(s) 681
BtrI CACGTC 2 cut(s) 617, 675
BtsCI GGATG 5 cut(s) 147, 328, 349, 420, 568
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 2 cut(s) 37, 733
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 145, 495
ClaI ATCGAT 2 cut(s) 177, 640
CseI GACGC 2 cut(s) 42, 745
CviAII CATG 5 cut(s) 149, 309, 608, 753, 807
DpnI GATC 9 cut(s) 176, 207, 357, 392, 401, 528, 639, 740, 749
DpnII GATC 9 cut(s) 174, 205, 355, 390, 399, 526, 637, 738, 747
EaeI YGGCCR 1 cut(s) 556
Ecl136II GAGCTC 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 148
Eco24I GRGCYC 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 145, 495
Eco53kI GAGCTC 1 cut(s) 220
Eco72I CACGTG 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 228
Eco91I GGTNACC 1 cut(s) 709
EcoICRI GAGCTC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 709
EcoT14I CCWWGG 1 cut(s) 148
EcoT38I GRGCYC 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 148
Esp3I CGTCTC 3 cut(s) 23, 332, 665
FaeI CATG 5 cut(s) 152, 312, 611, 756, 810
FaiI YATR 9 cut(s) 150, 254, 310, 466, 507, 555, 609, 754, 808
FaqI GGGAC 2 cut(s) 111, 182
FatI CATG 5 cut(s) 148, 308, 607, 752, 806
FauI CCCGC 4 cut(s) 44, 207, 693, 728
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 2 cut(s) 56, 613
Fnu4HI GCNGC 2 cut(s) 72, 237
FokI GGATG 5 cut(s) 154, 335, 356, 427, 575
FriOI GRGCYC 1 cut(s) 222
Fsp4HI GCNGC 2 cut(s) 72, 237
FspBI CTAG 3 cut(s) 110, 120, 602
GluI GCNGC 2 cut(s) 72, 237
HaeIII GGCC 1 cut(s) 558
HapII CCGG 5 cut(s) 68, 493, 559, 714, 764
HgaI GACGC 2 cut(s) 42, 745
Hin1II CATG 5 cut(s) 152, 312, 611, 756, 810
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 3 cut(s) 104, 246, 314
HinfI GANTC 6 cut(s) 179, 275, 298, 378, 431, 642
HpaII CCGG 5 cut(s) 68, 493, 559, 714, 764
HphI GGTGA 5 cut(s) 183, 269, 365, 437, 703
Hpy166II GTNNAC 2 cut(s) 57, 614
Hpy188I TCNGA 3 cut(s) 364, 450, 743
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 2 cut(s) 57, 614
Hpy99I CGWCG 2 cut(s) 58, 61
HpyAV CCTTC 1 cut(s) 738
HpyCH4III ACNGT 2 cut(s) 425, 656
HpyCH4IV ACGT 4 cut(s) 59, 532, 616, 674
HpyCH4V TGCA 3 cut(s) 236, 282, 570
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 77, 245, 545, 732
HpySE526I ACGT 4 cut(s) 59, 532, 616, 674
Hsp92II CATG 5 cut(s) 152, 312, 611, 756, 810
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 9 cut(s) 174, 205, 355, 390, 399, 526, 637, 738, 747
LmnI GCTCC 4 cut(s) 44, 152, 217, 678
LpnPI CCDG 6 cut(s) 81, 506, 572, 717, 727, 777
Lsp1109I GCAGC 1 cut(s) 248
LweI GCATC 3 cut(s) 223, 526, 535
MaeI CTAG 3 cut(s) 110, 120, 602
MaeII ACGT 4 cut(s) 59, 532, 616, 674
MaeIII GTNAC 3 cut(s) 650, 709, 793
MalI GATC 9 cut(s) 176, 207, 357, 392, 401, 528, 639, 740, 749
MbiI CCGCTC 1 cut(s) 39
MboI GATC 9 cut(s) 174, 205, 355, 390, 399, 526, 637, 738, 747
MboII GAAGA 3 cut(s) 37, 387, 536
MflI RGATCY 3 cut(s) 205, 526, 738
MhlI GDGCHC 1 cut(s) 222
MluCI AATT 1 cut(s) 480
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 6 cut(s) 20, 59, 250, 433, 499, 732
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 5 cut(s) 68, 493, 559, 714, 764
MspR9I CCNGG 2 cut(s) 493, 560
MvnI CGCG 2 cut(s) 53, 80
MwoI GCNNNNNNNGC 5 cut(s) 71, 77, 245, 545, 732
NciI CCSGG 2 cut(s) 493, 560
NcoI CCATGG 1 cut(s) 148
NdeII GATC 9 cut(s) 174, 205, 355, 390, 399, 526, 637, 738, 747
NlaIII CATG 5 cut(s) 152, 312, 611, 756, 810
NlaIV GGNNCC 2 cut(s) 66, 740
NmuCI GTSAC 2 cut(s) 709, 793
NspI RCATGY 1 cut(s) 756
OliI CACNNNNGTG 1 cut(s) 81
PcsI WCGNNNNNNNCGW 1 cut(s) 399
PfeI GAWTC 6 cut(s) 179, 275, 298, 378, 431, 642
PfoI TCCNGGA 1 cut(s) 491
PkrI GCNGC 2 cut(s) 73, 238
PmaCI CACGTG 1 cut(s) 533
PmlI CACGTG 1 cut(s) 533
Ppu21I YACGTR 1 cut(s) 533
Psp124BI GAGCTC 1 cut(s) 222
PspCI CACGTG 1 cut(s) 533
PspEI GGTNACC 1 cut(s) 709
PspN4I GGNNCC 2 cut(s) 66, 740
PspPI GGNCC 2 cut(s) 145, 495
PsuI RGATCY 3 cut(s) 205, 526, 738
RseI CAYNNNNRTG 1 cut(s) 81
SacI GAGCTC 1 cut(s) 222
SalI GTCGAC 1 cut(s) 55
SatI GCNGC 2 cut(s) 72, 237
Sau3AI GATC 9 cut(s) 174, 205, 355, 390, 399, 526, 637, 738, 747
Sau96I GGNCC 2 cut(s) 145, 495
ScrFI CCNGG 2 cut(s) 493, 560
SduI GDGCHC 1 cut(s) 222
SfaNI GCATC 3 cut(s) 223, 526, 535
SfcI CTRYAG 1 cut(s) 156
SgrAI CRCCGGYG 1 cut(s) 67
SgrDI CGTCGACG 1 cut(s) 55
SinI GGWCC 2 cut(s) 145, 495
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 1 cut(s) 480
SsiI CCGC 8 cut(s) 13, 33, 37, 71, 200, 686, 735, 798
SspMI CTAG 3 cut(s) 110, 120, 602
SstI GAGCTC 1 cut(s) 222
StyD4I CCNGG 2 cut(s) 491, 558
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 2 cut(s) 425, 656
TaiI ACGT 4 cut(s) 62, 535, 619, 677
TaqI TCGA 9 cut(s) 56, 177, 303, 381, 393, 402, 632, 640, 693
TaqII GACCGA 1 cut(s) 697
TasI AATT 1 cut(s) 480
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 6 cut(s) 179, 275, 298, 378, 431, 642
TscAI CASTG 1 cut(s) 393
TseFI GTSAC 2 cut(s) 709, 793
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 2 cut(s) 709, 793
TspDTI ATGAA 2 cut(s) 17, 615
TspGWI ACGGA 3 cut(s) 31, 356, 781
TspRI CASTG 1 cut(s) 393
VpaK11BI GGWCC 2 cut(s) 145, 495
XceI RCATGY 1 cut(s) 756
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XmiI GTMKAC 2 cut(s) 56, 613
XspI CTAG 3 cut(s) 110, 120, 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.