Rmu_sc0019120.1_g000001

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019120.1
Physical Location & Seq
Forward (+)
6052 .. 9306
3255 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019120.1_g000001.1.cds

Sequence Viewer

Length: 1464 bp
atgggtggcaggagttcaaaagaggatgggagtttgaggcagaagagttatgggtctaggtcgtcgtcttcttcttggagtggatatcctccagttcaatcaccatatgtagaaagtcaggggtatgcacctcagcaatcctatcctccatcacagtattcatatccgccgccgccaccgcaggattatggtcaagaaactcaggcttattatccaccccagcagccatcctatccatcatcatcatcatcacagtattccaatcccccgcagccgccgccggattatggggggcaaaggaagctggacaggagatattcgagaattgctgacagttacaattccctcgaggaggtgactgaggctcttgcacgtgctggacttgagtcttcgaatctaatagtcggtattgatttcacaaagagcaatgagtggacaggcaagaactcgtataacagaagaagcttgcatcacattggggatggtctaaatccctatgaacatgcaattaccattattggaaaaaccttggctgcttttgatgaggataacatgattccgtgttatggttttggagatgcaacaacccatgatcaagatgtttttagtttctacccaaacgatcaacattgcaatgggtttgaggaagtattgactcgctacaaggaaattgttcctcatcttcgccttgcaggaccgacttcatttgcacctgtaattgaaatggccatgactattgttgagcagagtggtggccaataccatgtcctattgataattgcagatggccaggtaactagaagtgttgatactgagcgtggcaggctaagtccacaggaacagaagacagttgatgcaattgttgaagcaagcaagttccctctatcaattatattggttggtgttggagatggaccctgggacatgatgaaagagtttgatgacaacattcctgctcgggcctttgataatttccaatttgtgaactttacggaaattatgtcaaagaaattgtcatctttgcgaaaggagactgaatttgctctagcagcattgatggaaattccgactcagtataaagcaacgatagagcttaatctcttgggtggtcagaagggcaattctccccacagggttcctctcccaccacctctccatggtgcatctttcaacagttcaaaacctttgtatggtgcgtcatccttcagcagttcgaaaccttctcatgagcccagtgttcctccttattatgaagacagcagttctttcagtacagcttcagctccaccagctccacctgcttccagttctacttatgataatcaggtctgccccatctgccttacaaattcaaaagacatggcctttggttgtgggcatcagacgtgttgcgaatgcgggcaagatcttcagacgtgcccgatatgccgaagcccaatccagaccagaataaaactctattaa

Protein Analysis

487

Amino Acids

53.62

Weight (kDa)

5.36

Isoelectric Point (pI)

63.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1306
AbsI CCTCGAGG 1 cut(s) 347
Acc36I ACCTGC 1 cut(s) 1306
AciI CCGC 8 cut(s) 167, 170, 173, 179, 269, 275, 278, 1398
AcoI YGGCCR 3 cut(s) 726, 754, 787
AcsI RAATTY 3 cut(s) 1037, 1062, 1348
AcuI CTGAAG 3 cut(s) 1189, 1263, 1394
AcvI CACGTG 1 cut(s) 374
AfaI GTAC 1 cut(s) 1273
AfiI CCNNNNNNNGG 5 cut(s) 287, 352, 566, 1157, 1190
AflIII ACRYGT 1 cut(s) 1385
AgsI TTSAA 7 cut(s) 18, 98, 722, 866, 1171, 1179, 1353
AjiI CACGTC 2 cut(s) 1386, 1416
AjnI CCWGG 2 cut(s) 789, 917
AluBI AGCT 6 cut(s) 304, 465, 1093, 1277, 1283, 1292
AluI AGCT 6 cut(s) 304, 465, 1093, 1277, 1283, 1292
Alw26I GTCTC 1 cut(s) 1025
Ama87I CYCGRG 2 cut(s) 347, 957
AoxI GGCC 5 cut(s) 726, 754, 787, 960, 1362
ApeKI GCWGC 4 cut(s) 223, 271, 533, 1049
ApoI RAATTY 3 cut(s) 1037, 1062, 1348
ArsI GACNNNNNNTTYG 4 cut(s) 998, 1030, 1349, 1381
Asp700I GAANNNNTTC 1 cut(s) 672
AspS9I GGNCC 3 cut(s) 695, 914, 960
AsuHPI GGTGA 2 cut(s) 93, 367
AsuII TTCGAA 2 cut(s) 392, 1214
AvaI CYCGRG 2 cut(s) 347, 957
AvaII GGWCC 2 cut(s) 695, 914
BaeGI GKGCMC 1 cut(s) 1421
BalI TGGCCA 3 cut(s) 728, 756, 789
BanII GRGCYC 1 cut(s) 1233
BarI GAAGNNNNNNTAC 2 cut(s) 793, 825
BbrPI CACGTG 1 cut(s) 374
BbsI GAAGAC 4 cut(s) 60, 381, 851, 1260
BbvCI CCTCAGC 1 cut(s) 132
BbvI GCAGC 4 cut(s) 235, 283, 520, 1061
BccI CCATC 9 cut(s) 20, 157, 235, 244, 476, 779, 905, 1051, 1343
BciT130I CCWGG 2 cut(s) 791, 919
BclI TGATCA 1 cut(s) 592
BcoDI GTCTC 1 cut(s) 1025
BfaI CTAG 3 cut(s) 57, 798, 1046
BfuAI ACCTGC 1 cut(s) 1306
BglII AGATCT 1 cut(s) 1405
BisI GCNGC 8 cut(s) 170, 173, 224, 272, 275, 278, 534, 1050
BlsI GCNGC 8 cut(s) 171, 174, 225, 273, 276, 279, 535, 1051
Bme1390I CCNGG 2 cut(s) 791, 919
Bme18I GGWCC 2 cut(s) 695, 914
BmeT110I CYCGRG 2 cut(s) 347, 957
BmgBI CACGTC 2 cut(s) 1386, 1416
BmgT120I GGNCC 3 cut(s) 695, 914, 960
BmiI GGNNCC 2 cut(s) 916, 1137
BmrFI CCNGG 2 cut(s) 791, 919
BmrI ACTGGG 1 cut(s) 1227
BmsI GCATC 5 cut(s) 478, 568, 844, 1172, 1387
BmuI ACTGGG 1 cut(s) 1227
BoxI GACNNNNGTC 1 cut(s) 385
BpiI GAAGAC 4 cut(s) 60, 381, 851, 1260
BpmI CTGGAG 1 cut(s) 75
Bpu10I CCTNAGC 1 cut(s) 132
Bpu14I TTCGAA 2 cut(s) 392, 1214
BpuEI CTTGAG 1 cut(s) 404
BsaAI YACGTR 1 cut(s) 374
BsaJI CCNNGG 4 cut(s) 528, 917, 918, 1156
BsaXI ACNNNNNCTCC 2 cut(s) 1137, 1167
Bsc4I CCNNNNNNNGG 5 cut(s) 287, 352, 566, 1157, 1190
Bse1I ACTGG 3 cut(s) 92, 1233, 1305
Bse3DI GCAATG 3 cut(s) 433, 628, 640
BseBI CCWGG 2 cut(s) 791, 919
BseDI CCNNGG 4 cut(s) 528, 917, 918, 1156
BseGI GGATG 4 cut(s) 31, 227, 487, 1199
BseLI CCNNNNNNNGG 5 cut(s) 287, 352, 566, 1157, 1190
BseMI GCAATG 3 cut(s) 433, 628, 640
BseMII CTCAG 5 cut(s) 146, 215, 351, 804, 1085
BseNI ACTGG 3 cut(s) 92, 1233, 1305
BseRI GAGGAG 1 cut(s) 365
BseSI GKGCMC 1 cut(s) 1421
BseXI GCAGC 4 cut(s) 235, 283, 520, 1061
BseYI CCCAGC 1 cut(s) 219
BshFI GGCC 5 cut(s) 728, 756, 789, 962, 1364
BsiHKCI CYCGRG 2 cut(s) 347, 957
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 935
BslI CCNNNNNNNGG 5 cut(s) 287, 352, 566, 1157, 1190
BsmAI GTCTC 1 cut(s) 1025
BsmFI GGGAC 1 cut(s) 935
BsmI GAATGC 1 cut(s) 1400
BsnI GGCC 5 cut(s) 728, 756, 789, 962, 1364
BsoBI CYCGRG 2 cut(s) 347, 957
Bsp119I TTCGAA 2 cut(s) 392, 1214
Bsp1286I GDGCHC 2 cut(s) 1233, 1421
Bsp143I GATC 3 cut(s) 592, 622, 1405
Bsp19I CCATGG 1 cut(s) 1156
BspACI CCGC 8 cut(s) 167, 170, 173, 179, 269, 275, 278, 1398
BspANI GGCC 5 cut(s) 728, 756, 789, 962, 1364
BspCNI CTCAG 5 cut(s) 145, 214, 352, 805, 1084
BspHI TCATGA 1 cut(s) 1225
BspLI GGNNCC 2 cut(s) 916, 1137
BspMI ACCTGC 1 cut(s) 1306
BspT104I TTCGAA 2 cut(s) 392, 1214
BsrDI GCAATG 3 cut(s) 433, 628, 640
BsrI ACTGG 3 cut(s) 92, 1233, 1305
BssECI CCNNGG 4 cut(s) 528, 917, 918, 1156
BssMI GATC 3 cut(s) 592, 622, 1405
BssT1I CCWWGG 2 cut(s) 528, 1156
Bst2UI CCWGG 2 cut(s) 791, 919
Bst4CI ACNGT 5 cut(s) 156, 255, 335, 850, 1175
Bst6I CTCTTC 1 cut(s) 38
BstBAI YACGTR 1 cut(s) 374
BstBI TTCGAA 2 cut(s) 392, 1214
BstC8I GCNNGC 4 cut(s) 467, 824, 871, 1400
BstDEI CTNAG 6 cut(s) 132, 201, 360, 813, 827, 1071
BstDSI CCRYGG 1 cut(s) 1156
BstENI CCTNNNNNAGG 1 cut(s) 350
BstF5I GGATG 4 cut(s) 31, 227, 487, 1199
BstKTI GATC 3 cut(s) 595, 625, 1408
BstMAI GTCTC 1 cut(s) 1025
BstMBI GATC 3 cut(s) 592, 622, 1405
BstMWI GCNNNNNNNGC 9 cut(s) 178, 277, 301, 823, 1049, 1289, 1298, 1338, 1425
BstNI CCWGG 2 cut(s) 791, 919
BstNSI RCATGY 1 cut(s) 506
BstPAI GACNNNNGTC 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 789, 917
BstSLI GKGCMC 1 cut(s) 1421
BstV1I GCAGC 4 cut(s) 235, 283, 520, 1061
BstV2I GAAGAC 4 cut(s) 60, 381, 851, 1260
BstX2I RGATCY 1 cut(s) 1405
BstYI RGATCY 1 cut(s) 1405
BsuRI GGCC 5 cut(s) 728, 756, 789, 962, 1364
BtgI CCRYGG 1 cut(s) 1156
BtrI CACGTC 2 cut(s) 1386, 1416
BtsCI GGATG 4 cut(s) 31, 227, 487, 1199
BtsIMutI CAGTG 1 cut(s) 1240
BveI ACCTGC 1 cut(s) 1306
Cac8I GCNNGC 4 cut(s) 467, 824, 871, 1400
CciI TCATGA 1 cut(s) 1225
Cfr13I GGNCC 3 cut(s) 695, 914, 960
CseI GACGC 1 cut(s) 1185
Csp6I GTAC 1 cut(s) 1272
CviAII CATG 9 cut(s) 503, 553, 590, 730, 764, 925, 1157, 1226, 1360
CviQI GTAC 1 cut(s) 1272
DdeI CTNAG 6 cut(s) 132, 201, 360, 813, 827, 1071
DpnI GATC 3 cut(s) 594, 624, 1407
DpnII GATC 3 cut(s) 592, 622, 1405
EaeI YGGCCR 3 cut(s) 726, 754, 787
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 156
Eco130I CCWWGG 2 cut(s) 528, 1156
Eco24I GRGCYC 1 cut(s) 1233
Eco32I GATATC 1 cut(s) 86
Eco47I GGWCC 2 cut(s) 695, 914
Eco57I CTGAAG 3 cut(s) 1189, 1263, 1394
Eco72I CACGTG 1 cut(s) 374
Eco88I CYCGRG 2 cut(s) 347, 957
EcoNI CCTNNNNNAGG 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 789, 917
EcoRV GATATC 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 528, 1156
EcoT38I GRGCYC 1 cut(s) 1233
ErhI CCWWGG 2 cut(s) 528, 1156
FaeI CATG 9 cut(s) 506, 556, 593, 733, 767, 928, 1160, 1229, 1363
FaqI GGGAC 1 cut(s) 935
FatI CATG 9 cut(s) 502, 552, 589, 729, 763, 924, 1156, 1225, 1359
FauI CCCGC 2 cut(s) 276, 1391
FauNDI CATATG 1 cut(s) 106
FbaI TGATCA 1 cut(s) 592
Fnu4HI GCNGC 8 cut(s) 170, 173, 224, 272, 275, 278, 534, 1050
FokI GGATG 4 cut(s) 38, 214, 494, 1186
FriOI GRGCYC 1 cut(s) 1233
Fsp4HI GCNGC 8 cut(s) 170, 173, 224, 272, 275, 278, 534, 1050
FspBI CTAG 3 cut(s) 57, 798, 1046
GluI GCNGC 8 cut(s) 170, 173, 224, 272, 275, 278, 534, 1050
GsaI CCCAGC 1 cut(s) 223
GsuI CTGGAG 1 cut(s) 75
HaeIII GGCC 5 cut(s) 728, 756, 789, 962, 1364
HapII CCGG 1 cut(s) 281
HgaI GACGC 1 cut(s) 1185
Hin1II CATG 9 cut(s) 506, 556, 593, 733, 767, 928, 1160, 1229, 1363
HindIII AAGCTT 1 cut(s) 463
HinfI GANTC 5 cut(s) 386, 394, 556, 655, 1069
HpaII CCGG 1 cut(s) 281
HphI GGTGA 2 cut(s) 93, 367
Hpy166II GTNNAC 3 cut(s) 435, 833, 985
Hpy188I TCNGA 4 cut(s) 1068, 1113, 1383, 1413
Hpy188III TCNNGA 5 cut(s) 194, 321, 596, 1226, 1441
Hpy8I GTNNAC 3 cut(s) 435, 833, 985
Hpy99I CGWCG 1 cut(s) 67
HpyAV CCTTC 3 cut(s) 1108, 1213, 1230
HpyCH4III ACNGT 5 cut(s) 156, 255, 335, 850, 1175
HpyCH4IV ACGT 3 cut(s) 373, 1385, 1415
HpyF10VI GCNNNNNNNGC 9 cut(s) 178, 277, 301, 823, 1049, 1289, 1298, 1338, 1425
HpyF3I CTNAG 6 cut(s) 132, 201, 360, 813, 827, 1071
HpySE526I ACGT 3 cut(s) 373, 1385, 1415
Hsp92II CATG 9 cut(s) 506, 556, 593, 733, 767, 928, 1160, 1229, 1363
Ksp22I TGATCA 1 cut(s) 592
Kzo9I GATC 3 cut(s) 592, 622, 1405
LmnI GCTCC 2 cut(s) 1288, 1297
Lsp1109I GCAGC 4 cut(s) 235, 283, 520, 1061
LweI GCATC 5 cut(s) 478, 568, 844, 1172, 1387
MaeI CTAG 3 cut(s) 57, 798, 1046
MaeII ACGT 3 cut(s) 373, 1385, 1415
MaeIII GTNAC 3 cut(s) 335, 355, 793
MalI GATC 3 cut(s) 594, 624, 1407
MboI GATC 3 cut(s) 592, 622, 1405
MboII GAAGA 9 cut(s) 55, 60, 63, 381, 471, 674, 856, 1265, 1400
MfeI CAATTG 1 cut(s) 858
MflI RGATCY 1 cut(s) 1405
MhlI GDGCHC 2 cut(s) 1233, 1421
MlsI TGGCCA 3 cut(s) 728, 756, 789
MluNI TGGCCA 3 cut(s) 728, 756, 789
MlyI GAGTC 3 cut(s) 395, 649, 1063
MmeI TCCRAC 2 cut(s) 886, 1091
Mox20I TGGCCA 3 cut(s) 728, 756, 789
MroXI GAANNNNTTC 1 cut(s) 672
MscI TGGCCA 3 cut(s) 728, 756, 789
MseI TTAA 2 cut(s) 1095, 1462
MslI CAYNNNNRTG 1 cut(s) 633
Msp20I TGGCCA 3 cut(s) 728, 756, 789
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 2 cut(s) 791, 919
MunI CAATTG 1 cut(s) 858
Mva1269I GAATGC 1 cut(s) 1400
MvaI CCWGG 2 cut(s) 791, 919
MwoI GCNNNNNNNGC 9 cut(s) 178, 277, 301, 823, 1049, 1289, 1298, 1338, 1425
NcoI CCATGG 1 cut(s) 1156
NdeI CATATG 1 cut(s) 106
NdeII GATC 3 cut(s) 592, 622, 1405
NlaIII CATG 9 cut(s) 506, 556, 593, 733, 767, 928, 1160, 1229, 1363
NlaIV GGNNCC 2 cut(s) 916, 1137
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 1 cut(s) 506
NspV TTCGAA 2 cut(s) 392, 1214
PaeR7I CTCGAG 1 cut(s) 347
PagI TCATGA 1 cut(s) 1225
PaqCI CACCTGC 1 cut(s) 1306
PasI CCCWGGG 1 cut(s) 918
PctI GAATGC 1 cut(s) 1400
PdmI GAANNNNTTC 1 cut(s) 672
PfeI GAWTC 2 cut(s) 394, 556
PkrI GCNGC 8 cut(s) 171, 174, 225, 273, 276, 279, 535, 1051
PleI GAGTC 3 cut(s) 394, 649, 1063
PmaCI CACGTG 1 cut(s) 374
PmlI CACGTG 1 cut(s) 374
PpsI GAGTC 3 cut(s) 394, 649, 1063
Ppu21I YACGTR 1 cut(s) 374
PshAI GACNNNNGTC 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 789, 917
PspCI CACGTG 1 cut(s) 374
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 2 cut(s) 789, 917
PspN4I GGNNCC 2 cut(s) 916, 1137
PspPI GGNCC 3 cut(s) 695, 914, 960
PspXI VCTCGAGB 1 cut(s) 347
PsuI RGATCY 1 cut(s) 1405
RsaI GTAC 1 cut(s) 1273
RsaNI GTAC 1 cut(s) 1272
RseI CAYNNNNRTG 1 cut(s) 633
SaqAI TTAA 2 cut(s) 1095, 1462
SatI GCNGC 8 cut(s) 170, 173, 224, 272, 275, 278, 534, 1050
Sau3AI GATC 3 cut(s) 592, 622, 1405
Sau96I GGNCC 3 cut(s) 695, 914, 960
SchI GAGTC 3 cut(s) 395, 649, 1063
ScrFI CCNGG 2 cut(s) 791, 919
SduI GDGCHC 2 cut(s) 1233, 1421
SfaNI GCATC 5 cut(s) 478, 568, 844, 1172, 1387
Sfr274I CTCGAG 1 cut(s) 347
SfuI TTCGAA 2 cut(s) 392, 1214
SinI GGWCC 2 cut(s) 695, 914
SlaI CTCGAG 1 cut(s) 347
SmiMI CAYNNNNRTG 1 cut(s) 633
SmlI CTYRAG 2 cut(s) 347, 383
SmoI CTYRAG 2 cut(s) 347, 383
SsiI CCGC 8 cut(s) 167, 170, 173, 179, 269, 275, 278, 1398
SspMI CTAG 3 cut(s) 57, 798, 1046
StyD4I CCNGG 2 cut(s) 789, 917
StyI CCWWGG 2 cut(s) 528, 1156
TaaI ACNGT 5 cut(s) 156, 255, 335, 850, 1175
TaiI ACGT 3 cut(s) 376, 1388, 1418
TaqI TCGA 4 cut(s) 320, 348, 392, 1214
TaqII GACCGA 1 cut(s) 712
TatI WGTACW 1 cut(s) 1271
TauI GCSGC 4 cut(s) 172, 175, 277, 280
TfiI GAWTC 2 cut(s) 394, 556
Tru1I TTAA 2 cut(s) 1095, 1462
Tru9I TTAA 2 cut(s) 1095, 1462
TscAI CASTG 1 cut(s) 1240
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 4 cut(s) 223, 271, 533, 1049
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 5 cut(s) 150, 513, 693, 944, 1266
TspGWI ACGGA 2 cut(s) 549, 1007
TspRI CASTG 1 cut(s) 1240
VpaK11BI GGWCC 2 cut(s) 695, 914
XagI CCTNNNNNAGG 1 cut(s) 350
XapI RAATTY 3 cut(s) 1037, 1062, 1348
XceI RCATGY 1 cut(s) 506
XhoI CTCGAG 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 672
XspI CTAG 3 cut(s) 57, 798, 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.