Rw7G010490

E3 ubiquitin-protein ligase RGLG2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000761
Physical Location & Seq
Reverse (-)
9750593 .. 9753373
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G010490.1

Sequence Viewer

Length: 1230 bp
ATGGGTTGTCAAGCTTCAACATTCAGATTTCCTAGTAGAAGGTCTCGTCGGTTTGCGCCACGACGGTTTCCACCTCCAGCTCAAAGCCATAGGGCGCTTCATGCTCAGTCTGGGCAACAGCAGCGTGTTGTACTTCCGCCTCCACCTCCACATCCTCTTCCACTTCCACCTCCACCTCCGCCGCTCCCGCCCCTGTCTCCACCTAAAAGCTATGAGTTGGAGAACAAATACTCAAATACAGATGCTAATCTGGTCAGCCAGCTAGTTCCTGATGTAGATTGGAATTCTCCAGCAGTTTCTGATGTTTACCTTGATCAAGATGACAAGCCTGAGGGTAATGAGGTCACGGATCAATATTTGAAGCATGCCGGTCTGGAGTCTGCCAAACTTATTTTTGGTATTGATTTCTCACAGAGCAATGAGCGGAGAGGTGAAAGGTCCTGTAACGGGAAGAGCTTGCATTACATTGGAGCAGAGCAAAATCCCTATGAACAAGCAATATCGATCATTGGGAAAATATTGCAGTACTCTGATAAGGATACGATGATTCCCTGTTTTGGATTTGGAGATGCATCAACCAATGACCAGGAAGTTTTCAGTTTCTATCCAGATGAGAGTGCTTGCTGCAATGGATTTGAAGAAGCAACAAAACGATATAGAGAAGTAGTCCCCCAGCTACAACTTGGAGGGCCTAAATCATTTGCCCCTATCATTGAAATGGCCATGACTCTTGTTGAACAGAGTGGTGGCCAGTACCATGTGTTGGTGATACTAGCTGATGGGCTGGTGACTAGAGGAGAAGATACTGCTCTTAGCCAGTTAAGCCCACAGGAAAAGAAAACGGTTGAAGCAATTGTGAAAGCAAGCGAGTATCCCTTATCAATTGTGGTAGTTGGAGTTGGAGATGGACCATGGGATATGATGGAGAAATTTGAGGGTAAAATTCCTCAACGGGCCTTTGATAACTTTCGGTTTGTGAATGCTGCAGACATTTTCTCAAAGAATATGGACAGCTCAAGAAAAGATGTAAAATTTGCTTCTGCAGCCTTGCTGCAATTACCCTCTCAGTATAAAGCAACACAAGAGCTCAGCATATTGGGTGCTACAAGAGAGAATGCGGTGCGCAGGATTCCTCTTCCCCCTCCTCGTTACAGTTCAGGCTTTGTTGGCAGTGAAAGAGCACCACATGCTTCTGACAATCATGTAATTGCATTCTTTCAACTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Copine zf-C3HC4_3

Protein Analysis

409

Amino Acids

45.29

Weight (kDa)

5.83

Isoelectric Point (pI)

55.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Copine PF07002 152 - 366 7.4e-63 Copine
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1124
AccB7I CCANNNNNTGG 1 cut(s) 763
AccBSI CCGCTC 2 cut(s) 184, 424
AciI CCGC 6 cut(s) 137, 179, 182, 188, 424, 1118
AclWI GGATC 1 cut(s) 357
AcoI YGGCCR 2 cut(s) 720, 748
AcsI RAATTY 4 cut(s) 283, 929, 942, 1031
AfaI GTAC 3 cut(s) 132, 527, 755
AfiI CCNNNNNNNGG 3 cut(s) 447, 557, 763
AgsI TTSAA 7 cut(s) 18, 361, 638, 716, 737, 848, 1220
AjnI CCWGG 1 cut(s) 585
AluBI AGCT 9 cut(s) 14, 80, 210, 262, 456, 676, 776, 1014, 1087
AluI AGCT 9 cut(s) 14, 80, 210, 262, 456, 676, 776, 1014, 1087
Alw21I GWGCWC 2 cut(s) 1089, 1183
Alw26I GTCTC 2 cut(s) 48, 201
AlwI GGATC 1 cut(s) 357
AlwNI CAGNNNCTG 1 cut(s) 299
AoxI GGCC 4 cut(s) 689, 720, 748, 954
ApeKI GCWGC 5 cut(s) 121, 624, 983, 1043, 1051
ApoI RAATTY 4 cut(s) 283, 929, 942, 1031
AspLEI GCGC 3 cut(s) 58, 97, 1125
AspS9I GGNCC 4 cut(s) 438, 689, 908, 954
AsuHPI GGTGA 3 cut(s) 443, 778, 799
AvaII GGWCC 2 cut(s) 438, 908
AxyI CCTNAGG 1 cut(s) 330
BalI TGGCCA 2 cut(s) 722, 750
BanII GRGCYC 1 cut(s) 1089
Bbv12I GWGCWC 2 cut(s) 1089, 1183
BbvI GCAGC 5 cut(s) 133, 611, 970, 1038, 1055
BccI CCATC 3 cut(s) 773, 899, 916
BciT130I CCWGG 1 cut(s) 587
BciVI GTATCC 2 cut(s) 532, 882
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 48, 201
BfaI CTAG 4 cut(s) 33, 263, 773, 792
BfmI CTRYAG 2 cut(s) 984, 1041
BfoI RGCGCY 1 cut(s) 98
BfuI GTATCC 2 cut(s) 532, 882
BisI GCNGC 6 cut(s) 122, 182, 625, 984, 1044, 1052
BlpI GCTNAGC 1 cut(s) 1088
BlsI GCNGC 6 cut(s) 123, 183, 626, 985, 1045, 1053
BmcAI AGTACT 1 cut(s) 527
Bme1390I CCNGG 1 cut(s) 587
Bme18I GGWCC 2 cut(s) 438, 908
BmgT120I GGNCC 4 cut(s) 438, 689, 908, 954
BmrFI CCNGG 1 cut(s) 587
BmsI GCATC 3 cut(s) 232, 559, 581
BpmI CTGGAG 3 cut(s) 60, 273, 395
Bpu1102I GCTNAGC 1 cut(s) 1088
BpuEI CTTGAG 1 cut(s) 1000
Bsa29I ATCGAT 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 911
Bsc4I CCNNNNNNNGG 3 cut(s) 447, 557, 763
Bse118I RCCGGY 1 cut(s) 368
Bse1I ACTGG 2 cut(s) 751, 817
Bse21I CCTNAGG 1 cut(s) 330
Bse3DI GCAATG 2 cut(s) 424, 634
Bse8I GATNNNNATC 1 cut(s) 246
BseBI CCWGG 1 cut(s) 587
BseCI ATCGAT 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 911
BseGI GGATG 1 cut(s) 151
BseJI GATNNNNATC 1 cut(s) 246
BseLI CCNNNNNNNGG 3 cut(s) 447, 557, 763
BseMI GCAATG 2 cut(s) 424, 634
BseMII CTCAG 4 cut(s) 119, 321, 1079, 1102
BseNI ACTGG 2 cut(s) 751, 817
BseRI GAGGAG 2 cut(s) 810, 1134
BseXI GCAGC 5 cut(s) 133, 611, 970, 1038, 1055
BseYI CCCAGC 1 cut(s) 672
BshFI GGCC 4 cut(s) 691, 722, 750, 956
BshVI ATCGAT 1 cut(s) 503
BsiHKAI GWGCWC 2 cut(s) 1089, 1183
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 653
BslI CCNNNNNNNGG 3 cut(s) 447, 557, 763
BsmAI GTCTC 2 cut(s) 48, 201
BsmFI GGGAC 1 cut(s) 653
BsmI GAATGC 3 cut(s) 985, 1120, 1211
BsnI GGCC 4 cut(s) 691, 722, 750, 956
Bso31I GGTCTC 1 cut(s) 48
Bsp1286I GDGCHC 2 cut(s) 1089, 1183
Bsp143I GATC 3 cut(s) 313, 349, 504
Bsp1720I GCTNAGC 1 cut(s) 1088
Bsp19I CCATGG 1 cut(s) 911
BspACI CCGC 6 cut(s) 137, 179, 182, 188, 424, 1118
BspANI GGCC 4 cut(s) 691, 722, 750, 956
BspCNI CTCAG 4 cut(s) 118, 322, 1078, 1101
BspDI ATCGAT 1 cut(s) 503
BspMAI CTGCAG 2 cut(s) 988, 1045
BspPI GGATC 1 cut(s) 357
BspQI GCTCTTC 1 cut(s) 446
BspTNI GGTCTC 1 cut(s) 48
BsrBI CCGCTC 2 cut(s) 184, 424
BsrDI GCAATG 2 cut(s) 424, 634
BsrFI RCCGGY 1 cut(s) 368
BsrI ACTGG 2 cut(s) 751, 817
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 1 cut(s) 911
BssMI GATC 3 cut(s) 313, 349, 504
BssT1I CCWWGG 1 cut(s) 911
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 3 cut(s) 66, 844, 1154
Bst6I CTCTTC 3 cut(s) 162, 446, 1140
BstAPI GCANNNNNTGC 1 cut(s) 1187
BstC8I GCNNGC 5 cut(s) 260, 366, 458, 622, 865
BstDEI CTNAG 5 cut(s) 105, 330, 812, 1065, 1088
BstDSI CCRYGG 1 cut(s) 911
BstF5I GGATG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 98
BstHHI GCGC 3 cut(s) 58, 97, 1125
BstKTI GATC 3 cut(s) 316, 352, 507
BstMAI GTCTC 2 cut(s) 48, 201
BstMBI GATC 3 cut(s) 313, 349, 504
BstMWI GCNNNNNNNGC 7 cut(s) 101, 121, 187, 822, 1043, 1167, 1187
BstNI CCWGG 1 cut(s) 587
BstNSI RCATGY 2 cut(s) 368, 1190
BstSCI CCNGG 1 cut(s) 585
BstSFI CTRYAG 2 cut(s) 984, 1041
BstV1I GCAGC 5 cut(s) 133, 611, 970, 1038, 1055
Bsu15I ATCGAT 1 cut(s) 503
Bsu36I CCTNAGG 1 cut(s) 330
BsuI GTATCC 2 cut(s) 532, 882
BsuRI GGCC 4 cut(s) 691, 722, 750, 956
BsuTUI ATCGAT 1 cut(s) 503
BtgI CCRYGG 1 cut(s) 911
BtsCI GGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 1177
BtsIMutI CAGTG 1 cut(s) 1177
Cac8I GCNNGC 5 cut(s) 260, 366, 458, 622, 865
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 3 cut(s) 58, 97, 1125
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 4 cut(s) 438, 689, 908, 954
ClaI ATCGAT 1 cut(s) 503
Csp6I GTAC 3 cut(s) 131, 526, 754
CviAII CATG 7 cut(s) 101, 365, 724, 758, 912, 1187, 1202
CviQI GTAC 3 cut(s) 131, 526, 754
DdeI CTNAG 5 cut(s) 105, 330, 812, 1065, 1088
DpnI GATC 3 cut(s) 315, 351, 506
DpnII GATC 3 cut(s) 313, 349, 504
EaeI YGGCCR 2 cut(s) 720, 748
Eam1104I CTCTTC 3 cut(s) 162, 446, 1140
EarI CTCTTC 3 cut(s) 162, 446, 1140
EciI GGCGGA 2 cut(s) 126, 168
Ecl136II GAGCTC 1 cut(s) 1087
Eco130I CCWWGG 1 cut(s) 911
Eco24I GRGCYC 1 cut(s) 1089
Eco31I GGTCTC 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 438, 908
Eco53kI GAGCTC 1 cut(s) 1087
Eco81I CCTNAGG 1 cut(s) 330
EcoICRI GAGCTC 1 cut(s) 1087
EcoO109I RGGNCCY 2 cut(s) 438, 689
EcoRI GAATTC 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 585
EcoT14I CCWWGG 1 cut(s) 911
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 1089
ErhI CCWWGG 1 cut(s) 911
FaeI CATG 7 cut(s) 104, 368, 727, 761, 915, 1190, 1205
FaqI GGGAC 1 cut(s) 653
FatI CATG 7 cut(s) 100, 364, 723, 757, 911, 1186, 1201
FauI CCCGC 1 cut(s) 195
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 6 cut(s) 122, 182, 625, 984, 1044, 1052
FokI GGATG 1 cut(s) 138
FriOI GRGCYC 1 cut(s) 1089
Fsp4HI GCNGC 6 cut(s) 122, 182, 625, 984, 1044, 1052
FspBI CTAG 4 cut(s) 33, 263, 773, 792
FspI TGCGCA 1 cut(s) 1124
GlaI GCGC 3 cut(s) 57, 96, 1124
GluI GCNGC 6 cut(s) 122, 182, 625, 984, 1044, 1052
GsaI CCCAGC 1 cut(s) 676
GsuI CTGGAG 3 cut(s) 60, 273, 395
HaeII RGCGCY 1 cut(s) 98
HaeIII GGCC 4 cut(s) 691, 722, 750, 956
HapII CCGG 1 cut(s) 369
HhaI GCGC 3 cut(s) 58, 97, 1125
Hin1II CATG 7 cut(s) 104, 368, 727, 761, 915, 1190, 1205
Hin6I GCGC 3 cut(s) 56, 95, 1123
HinP1I GCGC 3 cut(s) 56, 95, 1123
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 4 cut(s) 377, 547, 727, 1129
HpaII CCGG 1 cut(s) 369
HphI GGTGA 3 cut(s) 443, 778, 799
Hpy166II GTNNAC 1 cut(s) 307
Hpy188I TCNGA 4 cut(s) 26, 301, 532, 1195
Hpy188III TCNNGA 5 cut(s) 269, 317, 374, 608, 1017
Hpy8I GTNNAC 1 cut(s) 307
Hpy99I CGWCG 2 cut(s) 51, 66
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 3 cut(s) 66, 844, 1154
HpyCH4V TGCA 8 cut(s) 460, 523, 572, 627, 986, 1043, 1054, 1211
HpyF10VI GCNNNNNNNGC 7 cut(s) 101, 121, 187, 822, 1043, 1167, 1187
HpyF3I CTNAG 5 cut(s) 105, 330, 812, 1065, 1088
Hsp92II CATG 7 cut(s) 104, 368, 727, 761, 915, 1190, 1205
HspAI GCGC 3 cut(s) 56, 95, 1123
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 3 cut(s) 313, 349, 504
LguI GCTCTTC 1 cut(s) 446
LmnI GCTCC 2 cut(s) 189, 470
Lsp1109I GCAGC 5 cut(s) 133, 611, 970, 1038, 1055
LweI GCATC 3 cut(s) 232, 559, 581
MaeI CTAG 4 cut(s) 33, 263, 773, 792
MaeIII GTNAC 4 cut(s) 343, 443, 787, 1148
MalI GATC 3 cut(s) 315, 351, 506
MbiI CCGCTC 2 cut(s) 184, 424
MboI GATC 3 cut(s) 313, 349, 504
MboII GAAGA 5 cut(s) 149, 463, 650, 812, 1127
MfeI CAATTG 2 cut(s) 852, 882
MhlI GDGCHC 2 cut(s) 1089, 1183
MlsI TGGCCA 2 cut(s) 722, 750
MluCI AATT 8 cut(s) 283, 852, 882, 929, 942, 1031, 1055, 1206
MluNI TGGCCA 2 cut(s) 722, 750
MlyI GAGTC 2 cut(s) 386, 721
MmeI TCCRAC 3 cut(s) 198, 874, 880
Mox20I TGGCCA 2 cut(s) 722, 750
Mph1103I ATGCAT 1 cut(s) 574
MscI TGGCCA 2 cut(s) 722, 750
MseI TTAA 1 cut(s) 821
MslI CAYNNNNRTG 1 cut(s) 716
Msp20I TGGCCA 2 cut(s) 722, 750
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 587
MunI CAATTG 2 cut(s) 852, 882
Mva1269I GAATGC 3 cut(s) 985, 1120, 1211
MvaI CCWGG 1 cut(s) 587
MwoI GCNNNNNNNGC 7 cut(s) 101, 121, 187, 822, 1043, 1167, 1187
NcoI CCATGG 1 cut(s) 911
NdeII GATC 3 cut(s) 313, 349, 504
NlaIII CATG 7 cut(s) 104, 368, 727, 761, 915, 1190, 1205
NmuCI GTSAC 2 cut(s) 343, 787
NsbI TGCGCA 1 cut(s) 1124
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 2 cut(s) 368, 1190
PaeI GCATGC 1 cut(s) 368
PciSI GCTCTTC 1 cut(s) 446
PctI GAATGC 3 cut(s) 985, 1120, 1211
PfeI GAWTC 2 cut(s) 547, 1129
PflMI CCANNNNNTGG 1 cut(s) 763
PkrI GCNGC 6 cut(s) 123, 183, 626, 985, 1045, 1053
PleI GAGTC 2 cut(s) 385, 721
PpsI GAGTC 2 cut(s) 385, 721
PpuMI RGGWCCY 1 cut(s) 438
Psp124BI GAGCTC 1 cut(s) 1089
Psp5II RGGWCCY 1 cut(s) 438
Psp6I CCWGG 1 cut(s) 585
PspFI CCCAGC 1 cut(s) 672
PspGI CCWGG 1 cut(s) 585
PspPI GGNCC 4 cut(s) 438, 689, 908, 954
PspPPI RGGWCCY 1 cut(s) 438
PstI CTGCAG 2 cut(s) 988, 1045
PstNI CAGNNNCTG 1 cut(s) 299
RsaI GTAC 3 cut(s) 132, 527, 755
RsaNI GTAC 3 cut(s) 131, 526, 754
RseI CAYNNNNRTG 1 cut(s) 716
SacI GAGCTC 1 cut(s) 1089
SapI GCTCTTC 1 cut(s) 446
SaqAI TTAA 1 cut(s) 821
SatI GCNGC 6 cut(s) 122, 182, 625, 984, 1044, 1052
Sau3AI GATC 3 cut(s) 313, 349, 504
Sau96I GGNCC 4 cut(s) 438, 689, 908, 954
ScaI AGTACT 1 cut(s) 527
SchI GAGTC 2 cut(s) 386, 721
ScrFI CCNGG 1 cut(s) 587
SduI GDGCHC 2 cut(s) 1089, 1183
SfaNI GCATC 3 cut(s) 232, 559, 581
SfcI CTRYAG 2 cut(s) 984, 1041
SinI GGWCC 2 cut(s) 438, 908
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 1 cut(s) 1015
SmoI CTYRAG 1 cut(s) 1015
SphI GCATGC 1 cut(s) 368
Sse9I AATT 8 cut(s) 283, 852, 882, 929, 942, 1031, 1055, 1206
SsiI CCGC 6 cut(s) 137, 179, 182, 188, 424, 1118
SspI AATATT 2 cut(s) 356, 519
SspMI CTAG 4 cut(s) 33, 263, 773, 792
SstI GAGCTC 1 cut(s) 1089
StyD4I CCNGG 1 cut(s) 585
StyI CCWWGG 1 cut(s) 911
TaaI ACNGT 3 cut(s) 66, 844, 1154
TaqI TCGA 1 cut(s) 503
TasI AATT 8 cut(s) 283, 852, 882, 929, 942, 1031, 1055, 1206
TatI WGTACW 2 cut(s) 130, 525
TauI GCSGC 1 cut(s) 184
TfiI GAWTC 2 cut(s) 547, 1129
Tru1I TTAA 1 cut(s) 821
Tru9I TTAA 1 cut(s) 821
TscAI CASTG 1 cut(s) 1177
TseFI GTSAC 2 cut(s) 343, 787
TseI GCWGC 5 cut(s) 121, 624, 983, 1043, 1051
Tsp45I GTSAC 2 cut(s) 343, 787
TspDTI ATGAA 2 cut(s) 89, 504
TspGWI ACGGA 1 cut(s) 362
TspRI CASTG 1 cut(s) 1177
Van91I CCANNNNNTGG 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 438, 908
XapI RAATTY 4 cut(s) 283, 929, 942, 1031
XceI RCATGY 2 cut(s) 368, 1190
XcmI CCANNNNNNNNNTGG 1 cut(s) 680
XspI CTAG 4 cut(s) 33, 263, 773, 792
ZrmI AGTACT 1 cut(s) 527
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.