Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004548

Physical Location & Seq

Genomic Coordinates Reverse (-)

23580747 .. 23581361

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGTGGTGGTGGTTCTTTCTGTAGTGTTACTATGTAAGCTTCTCAAATTTCTACTCAAGAAGATCATCTACTATCCAGAATTATTCTTTATACATAGTGTTGATGATCAACAAAATAAGGACGATAGTGATCACCAGCAGCTGGAGGTCATGAACTTTGAAGCTGCAGCAACTTCACATTCTAGTTGGTTGCGCTTTCAAGTACCAGTAGTAGTTCCGGTGGTGGTTGATGCAGAATCGATTGAGAAGCAACTACCGGTTGTGAAGTATTGGGACCTCAATCTGAAGAAAAGAAGCCGGCAACACCATTTGCAAGCTATATCTTCGTCTTCGTATCCGGAGGAAGAAATATTGCACGTTTCATCATGTATTGTGTGCATGAATGTCATAGAGGGCAGGGACGATGTGAGGGAGCTGTGCAATTGCGAGCATGTTTTCCACAAAGACTGCCTGGATGCTTGGATCGGCCAGGCTCACTTAACTTGTCCTCTGTGTAGATCTGACCTATTACTACCAGCTACTACTTCGAAGAATGATAAAGATGGCGGTAGAGATCCATGGAGGGCAGAGAGGATGAATTACTTGTTTGGTGAAGATGTTTGCTTCACTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

205

Amino Acids

23.45

Weight (kDa)

5.55

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	122 - 166	3.8e-10	Ring finger domain
zf-C3HC4_2	PF13923	123 - 165	5e-06	Zinc finger, C3HC4 type (RING finger)
zf-rbx1	PF12678	133 - 166	4.1e-06	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32950 FvH4_7g32960
malus_domestica	MD01G1228600.v1.1 MD07G1299400.v1.1 MD07G1299500.v1.1 MD07G1299600.v1.1
prunus_persica	Prupe.2G319200_v2.0.a1 Prupe.2G319300_v2.0.a1 Prupe.2G319400_v2.0.a1
pyrus_communis	pycom07g27170
rosa_chinensis	RchiOBHm_Chr1g0382911 RchiOBHm_Chr1g0382921
rosa_laevigata	RLG00000026149
rosa_multiflora	Rmu_co8270753.1_g000001 Rmu_co8320179.1_g000001 Rmu_sc0001785.1_g000002 Rmu_sc0010366.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277780
rosa_samantha	Rh1AG462300 Rh1AG462400 Rh1AG462500 Rh1AG462600 Rh1BG419300 Rh1BG419400 Rh1CG433000 Rh1CG433100 Rh1CG433200 Rh1CG433400 Rh1DG451400 Rh1DG451500
rosa_wichuraiana	Rw1G040940 Rw1G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	142
AccIII	TCCGGA	1 cut(s)	337
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	2 cut(s)	470, 548
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	1 cut(s)	47
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	204
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	161, 200
AjnI	CCWGG	2 cut(s)	450, 468
AluBI	AGCT	7 cut(s)	40, 142, 164, 317, 415, 518, 612
AluI	AGCT	7 cut(s)	40, 142, 164, 317, 415, 518, 612
AlwI	GGATC	2 cut(s)	470, 548
AlwNI	CAGNNNCTG	1 cut(s)	142
Aor13HI	TCCGGA	1 cut(s)	337
AoxI	GGCC	1 cut(s)	466
ApeKI	GCWGC	3 cut(s)	139, 164, 167
ApoI	RAATTY	1 cut(s)	47
AsiGI	ACCGGT	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	274
AsuHPI	GGTGA	2 cut(s)	125, 602
AsuII	TTCGAA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	274
BarI	GAAGNNNNNNTAC	2 cut(s)	53, 85
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	3 cut(s)	151, 151, 179
BccI	CCATC	1 cut(s)	536
BciT130I	CCWGG	2 cut(s)	452, 470
BciVI	GTATCC	1 cut(s)	345
BclI	TGATCA	2 cut(s)	106, 130
BfaI	CTAG	3 cut(s)	183, 609, 613
BfmI	CTRYAG	2 cut(s)	21, 165
BfuI	GTATCC	1 cut(s)	345
BglII	AGATCT	1 cut(s)	497
BisI	GCNGC	3 cut(s)	140, 165, 168
BlsI	GCNGC	3 cut(s)	141, 166, 169
Bme1390I	CCNGG	2 cut(s)	452, 470
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	2 cut(s)	452, 470
BmsI	GCATC	2 cut(s)	220, 445
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	164
Bpu14I	TTCGAA	1 cut(s)	527
BpuEI	CTTGAG	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	239
BsaBI	GATNNNNATC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	557
BsaWI	WCCGGW	3 cut(s)	217, 256, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	2 cut(s)	256, 297
Bse1I	ACTGG	1 cut(s)	206
Bse8I	GATNNNNATC	1 cut(s)	129
BseAI	TCCGGA	1 cut(s)	337
BseBI	CCWGG	2 cut(s)	452, 470
BseCI	ATCGAT	1 cut(s)	239
BseDI	CCNNGG	1 cut(s)	557
BseGI	GGATG	2 cut(s)	460, 579
BseJI	GATNNNNATC	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseNI	ACTGG	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	151, 151, 179
BshFI	GGCC	1 cut(s)	468
BshTI	ACCGGT	1 cut(s)	256
BshVI	ATCGAT	1 cut(s)	239
BsiSI	CCGG	4 cut(s)	218, 257, 298, 338
BslFI	GGGAC	2 cut(s)	287, 413
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	287, 413
BsnI	GGCC	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	527
Bsp13I	TCCGGA	1 cut(s)	337
Bsp143I	GATC	6 cut(s)	63, 106, 130, 462, 497, 553
Bsp19I	CCATGG	1 cut(s)	557
BspACI	CCGC	1 cut(s)	546
BspANI	GGCC	1 cut(s)	468
BspDI	ATCGAT	1 cut(s)	239
BspEI	TCCGGA	1 cut(s)	337
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	1 cut(s)	275
BspMAI	CTGCAG	1 cut(s)	169
BspPI	GGATC	2 cut(s)	470, 548
BspT104I	TTCGAA	1 cut(s)	527
BsrFI	RCCGGY	2 cut(s)	256, 297
BsrI	ACTGG	1 cut(s)	206
BssAI	RCCGGY	2 cut(s)	256, 297
BssECI	CCNNGG	1 cut(s)	557
BssMI	GATC	6 cut(s)	63, 106, 130, 462, 497, 553
BssT1I	CCWWGG	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	452, 470
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	299, 315, 428
BstDSI	CCRYGG	1 cut(s)	557
BstF5I	GGATG	2 cut(s)	460, 579
BstHHI	GCGC	1 cut(s)	195
BstKTI	GATC	6 cut(s)	66, 109, 133, 465, 500, 556
BstMBI	GATC	6 cut(s)	63, 106, 130, 462, 497, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	609
BstNI	CCWGG	2 cut(s)	452, 470
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	2 cut(s)	450, 468
BstSFI	CTRYAG	2 cut(s)	21, 165
BstV1I	GCAGC	3 cut(s)	151, 151, 179
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	497, 553
BstYI	RGATCY	2 cut(s)	497, 553
Bsu15I	ATCGAT	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	468
BsuTUI	ATCGAT	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	557
BtsCI	GGATG	2 cut(s)	460, 579
Cac8I	GCNNGC	3 cut(s)	299, 315, 428
CaiI	CAGNNNCTG	1 cut(s)	142
CciI	TCATGA	1 cut(s)	150
CfoI	GCGC	1 cut(s)	195
Cfr10I	RCCGGY	2 cut(s)	256, 297
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	203
CspAI	ACCGGT	1 cut(s)	256
CviAII	CATG	5 cut(s)	151, 366, 379, 431, 558
CviQI	GTAC	1 cut(s)	203
DpnI	GATC	6 cut(s)	65, 108, 132, 464, 499, 555
DpnII	GATC	6 cut(s)	63, 106, 130, 462, 497, 553
EaeI	YGGCCR	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	274
Eco57I	CTGAAG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	274
EcoRII	CCWGG	2 cut(s)	450, 468
EcoT14I	CCWWGG	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	557
FaeI	CATG	5 cut(s)	154, 369, 382, 434, 561
FaqI	GGGAC	2 cut(s)	287, 413
FatI	CATG	5 cut(s)	150, 365, 378, 430, 557
FbaI	TGATCA	2 cut(s)	106, 130
Fnu4HI	GCNGC	3 cut(s)	140, 165, 168
FokI	GGATG	2 cut(s)	467, 586
Fsp4HI	GCNGC	3 cut(s)	140, 165, 168
FspBI	CTAG	3 cut(s)	183, 609, 613
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	140, 165, 168
GsuI	CTGGAG	1 cut(s)	164
HaeIII	GGCC	1 cut(s)	468
HapII	CCGG	4 cut(s)	218, 257, 298, 338
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	5 cut(s)	154, 369, 382, 434, 561
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	4 cut(s)	218, 257, 298, 338
HphI	GGTGA	2 cut(s)	125, 602
Hpy188I	TCNGA	2 cut(s)	285, 502
Hpy188III	TCNNGA	4 cut(s)	58, 77, 151, 338
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	6 cut(s)	167, 233, 313, 355, 378, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	5 cut(s)	154, 369, 382, 434, 561
HspAI	GCGC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	337
KroI	GCCGGC	1 cut(s)	297
KroNI	GCCGGC	1 cut(s)	299
Ksp22I	TGATCA	2 cut(s)	106, 130
Kzo9I	GATC	6 cut(s)	63, 106, 130, 462, 497, 553
LmnI	GCTCC	1 cut(s)	412
Lsp1109I	GCAGC	3 cut(s)	151, 151, 179
LweI	GCATC	2 cut(s)	220, 445
MaeI	CTAG	3 cut(s)	183, 609, 613
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	6 cut(s)	65, 108, 132, 464, 499, 555
MboI	GATC	6 cut(s)	63, 106, 130, 462, 497, 553
MboII	GAAGA	7 cut(s)	73, 298, 315, 321, 356, 541, 605
MfeI	CAATTG	1 cut(s)	421
MflI	RGATCY	2 cut(s)	497, 553
MluCI	AATT	4 cut(s)	47, 80, 421, 577
MnlI	CCTC	8 cut(s)	139, 287, 334, 385, 402, 498, 555, 564
MroI	TCCGGA	1 cut(s)	337
MroNI	GCCGGC	1 cut(s)	297
MseI	TTAA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	142
MspI	CCGG	4 cut(s)	218, 257, 298, 338
MspR9I	CCNGG	2 cut(s)	452, 470
MunI	CAATTG	1 cut(s)	421
MvaI	CCWGG	2 cut(s)	452, 470
MwoI	GCNNNNNNNGC	1 cut(s)	609
NaeI	GCCGGC	1 cut(s)	299
NcoI	CCATGG	1 cut(s)	557
NdeII	GATC	6 cut(s)	63, 106, 130, 462, 497, 553
NgoMIV	GCCGGC	1 cut(s)	297
NlaIII	CATG	5 cut(s)	154, 369, 382, 434, 561
NlaIV	GGNNCC	1 cut(s)	275
NspI	RCATGY	1 cut(s)	434
NspV	TTCGAA	1 cut(s)	527
PagI	TCATGA	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	299
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	142
PinAI	ACCGGT	1 cut(s)	256
PkrI	GCNGC	3 cut(s)	141, 166, 169
PpuMI	RGGWCCY	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	450, 468
PspGI	CCWGG	2 cut(s)	450, 468
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	274
PspPPI	RGGWCCY	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	142
PsuI	RGATCY	2 cut(s)	497, 553
PvuII	CAGCTG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	204
RsaNI	GTAC	1 cut(s)	203
SaqAI	TTAA	1 cut(s)	479
SatI	GCNGC	3 cut(s)	140, 165, 168
Sau3AI	GATC	6 cut(s)	63, 106, 130, 462, 497, 553
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	2 cut(s)	452, 470
SfaNI	GCATC	2 cut(s)	220, 445
SfcI	CTRYAG	2 cut(s)	21, 165
SfuI	TTCGAA	1 cut(s)	527
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	4 cut(s)	47, 80, 421, 577
SsiI	CCGC	1 cut(s)	546
SspI	AATATT	1 cut(s)	351
SspMI	CTAG	3 cut(s)	183, 609, 613
StyD4I	CCNGG	2 cut(s)	450, 468
StyI	CCWWGG	1 cut(s)	557
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	239, 527
TasI	AATT	4 cut(s)	47, 80, 421, 577
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	479
Tru9I	TTAA	1 cut(s)	479
TseI	GCWGC	3 cut(s)	139, 164, 167
TspDTI	ATGAA	4 cut(s)	167, 351, 395, 590
Van91I	CCANNNNNTGG	1 cut(s)	142
VpaK11BI	GGWCC	1 cut(s)	274
XapI	RAATTY	1 cut(s)	47
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	3 cut(s)	183, 609, 613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.