Rh1AG462500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004548
Physical Location & Seq
Reverse (-)
67881823 .. 67882056
234 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG462500.1

Sequence Viewer

Length: 234 bp
ATGAAGAAGATGATCGTATACTCATTGTTCAGACCTGAAGTTAAAGACAAGGTCGACACTAATGATCATCATCATCAGGTCGAGATGAATTTCCCAGCTGCAGCCGCTCCGAATTGGTTGCACTTGCAGGTACCAGTAGTTCCGGTGGTAGTCGACACTGAATCGGTTAAGAAGCAACTTCCGGTTGCAATACCGGAACCTAATGATAGAGAGAAGAGATCGATCGCGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.79

Weight (kDa)

6.9

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 118
Acc65I GGTACC 1 cut(s) 130
AccB1I GGYRCC 1 cut(s) 130
AccBSI CCGCTC 1 cut(s) 107
AccI GTMKAC 3 cut(s) 18, 54, 153
AccII CGCG 1 cut(s) 227
AciI CCGC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 1 cut(s) 132
AluBI AGCT 1 cut(s) 98
AluI AGCT 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 98, 101
ApoI RAATTY 1 cut(s) 88
Asp718I GGTACC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 130
BbvI GCAGC 2 cut(s) 85, 113
BcgI CGANNNNNNTGC 2 cut(s) 100, 134
BclI TGATCA 1 cut(s) 64
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 118
BisI GCNGC 3 cut(s) 99, 102, 105
BlsI GCNGC 3 cut(s) 100, 103, 106
BmiI GGNNCC 2 cut(s) 132, 198
Bsa29I ATCGAT 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 69
BsaWI WCCGGW 3 cut(s) 142, 181, 193
Bse1I ACTGG 1 cut(s) 134
Bse8I GATNNNNATC 1 cut(s) 69
BseCI ATCGAT 1 cut(s) 221
BseJI GATNNNNATC 1 cut(s) 69
BseNI ACTGG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 85, 113
BseYI CCCAGC 1 cut(s) 94
Bsh1236I CGCG 1 cut(s) 227
Bsh1285I CGRYCG 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 130
BshVI ATCGAT 1 cut(s) 221
BsiEI CGRYCG 1 cut(s) 225
BsiSI CCGG 3 cut(s) 143, 182, 194
Bsp143I GATC 4 cut(s) 12, 64, 218, 222
Bsp68I TCGCGA 1 cut(s) 227
BspACI CCGC 1 cut(s) 105
BspDI ATCGAT 1 cut(s) 221
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 2 cut(s) 132, 198
BspMAI CTGCAG 1 cut(s) 103
BspMI ACCTGC 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 107
BsrI ACTGG 1 cut(s) 134
BssMI GATC 4 cut(s) 12, 64, 218, 222
BssNAI GTATAC 1 cut(s) 19
Bst1107I GTATAC 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 209
BstFNI CGCG 1 cut(s) 227
BstKTI GATC 4 cut(s) 15, 67, 221, 225
BstMBI GATC 4 cut(s) 12, 64, 218, 222
BstMCI CGRYCG 1 cut(s) 225
BstMWI GCNNNNNNNGC 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 99
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 2 cut(s) 85, 113
BstZ17I GTATAC 1 cut(s) 19
Bsu15I ATCGAT 1 cut(s) 221
BsuTUI ATCGAT 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 156
BtuMI TCGCGA 1 cut(s) 227
BveI ACCTGC 1 cut(s) 118
ClaI ATCGAT 1 cut(s) 221
Csp6I GTAC 1 cut(s) 131
CviJI RGCY 2 cut(s) 98, 104
CviKI_1 RGCY 2 cut(s) 98, 104
CviQI GTAC 1 cut(s) 131
DpnI GATC 4 cut(s) 14, 66, 220, 224
DpnII GATC 4 cut(s) 12, 64, 218, 222
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco57I CTGAAG 1 cut(s) 57
FaiI YATR 1 cut(s) 19
FbaI TGATCA 1 cut(s) 64
FblI GTMKAC 3 cut(s) 18, 54, 153
Fnu4HI GCNGC 3 cut(s) 99, 102, 105
Fsp4HI GCNGC 3 cut(s) 99, 102, 105
GluI GCNGC 3 cut(s) 99, 102, 105
GsaI CCCAGC 1 cut(s) 98
HapII CCGG 3 cut(s) 143, 182, 194
HincII GTYRAC 2 cut(s) 55, 154
HindII GTYRAC 2 cut(s) 55, 154
HinfI GANTC 1 cut(s) 161
HpaII CCGG 3 cut(s) 143, 182, 194
Hpy166II GTNNAC 3 cut(s) 19, 55, 154
Hpy188I TCNGA 2 cut(s) 32, 111
Hpy188III TCNNGA 2 cut(s) 82, 226
Hpy8I GTNNAC 3 cut(s) 19, 55, 154
HpyCH4V TGCA 4 cut(s) 101, 121, 127, 188
HpyF10VI GCNNNNNNNGC 1 cut(s) 104
KpnI GGTACC 1 cut(s) 134
Ksp22I TGATCA 1 cut(s) 64
Kzo9I GATC 4 cut(s) 12, 64, 218, 222
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 8 cut(s) 48, 62, 108, 113, 147, 156, 195, 207
Lsp1109I GCAGC 2 cut(s) 85, 113
MalI GATC 4 cut(s) 14, 66, 220, 224
MbiI CCGCTC 1 cut(s) 107
MboI GATC 4 cut(s) 12, 64, 218, 222
MboII GAAGA 3 cut(s) 16, 19, 226
MluCI AATT 2 cut(s) 88, 112
MseI TTAA 2 cut(s) 42, 168
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 3 cut(s) 143, 182, 194
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 1 cut(s) 104
NdeII GATC 4 cut(s) 12, 64, 218, 222
NlaIV GGNNCC 2 cut(s) 132, 198
NruI TCGCGA 1 cut(s) 227
PfeI GAWTC 1 cut(s) 161
PflFI GACNNNGTC 1 cut(s) 50
PkrI GCNGC 3 cut(s) 100, 103, 106
Ple19I CGATCG 1 cut(s) 225
PspFI CCCAGC 1 cut(s) 94
PspN4I GGNNCC 2 cut(s) 132, 198
PsrI GAACNNNNNNTAC 2 cut(s) 123, 155
PstI CTGCAG 1 cut(s) 103
PsyI GACNNNGTC 1 cut(s) 50
PvuI CGATCG 1 cut(s) 225
PvuII CAGCTG 1 cut(s) 98
RruI TCGCGA 1 cut(s) 227
RsaI GTAC 1 cut(s) 132
RsaNI GTAC 1 cut(s) 131
SalI GTCGAC 2 cut(s) 53, 152
SaqAI TTAA 2 cut(s) 42, 168
SatI GCNGC 3 cut(s) 99, 102, 105
Sau3AI GATC 4 cut(s) 12, 64, 218, 222
SetI ASST 6 cut(s) 37, 54, 81, 100, 132, 202
SfcI CTRYAG 1 cut(s) 99
Sse9I AATT 2 cut(s) 88, 112
SsiI CCGC 1 cut(s) 105
TaqI TCGA 4 cut(s) 54, 81, 153, 221
TasI AATT 2 cut(s) 88, 112
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 42, 168
Tru9I TTAA 2 cut(s) 42, 168
TscAI CASTG 1 cut(s) 163
TseI GCWGC 2 cut(s) 98, 101
TspDTI ATGAA 2 cut(s) 17, 101
TspRI CASTG 1 cut(s) 163
Tth111I GACNNNGTC 1 cut(s) 50
XapI RAATTY 1 cut(s) 88
XmiI GTMKAC 3 cut(s) 18, 54, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.