Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004548

Physical Location & Seq

Genomic Coordinates Reverse (-)

35859634 .. 35860203

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1299600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGCAATCAAGAAACATGCTCATCAAAATGTTACTTTCCCTTCTCAATCTCCTCAGGATCATCAAGACACACTACTACTCGTTCATGATTACTTTACGTGATGATCAATATCACAAGCTTCCCGGAATAAGTTATTCTGATCGTGTTGCGCTACAAGATCACAATAATTTATTCCCGGAAGTAACCCCTTCGCCTTGGTTGGTGCCGTTGCCGGTTCACTGTATAGCTGAATCCGTGAAGAACCAGCTCCCGACGGTGCAAAATAGAGGAGGCAACACGCAGGATTCGGATTATGGCTCGCACACCGATACGTGTATTGTGTGCATGGATAAAGTGGAAGGAGGGCAAAGGGTGAGAGAGCTTTCCAATTGTTCACATGTATTTCACAAAGAGTGCCTAGATGCTTGGATTGATGAGGGTCAGTGTACCTGTCCTCTTTGTCGATCCAATCTATTGCCCAAGAATTGTACTACTCCAGAACCAAAAGGTCATGAACGGGAGTTGGATCCATGGAGGGCGGAGAGGATGATTTACTTGTTTGGGGACGATTACCAGCTCAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0012505 GO:0016020 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031984 GO:0032446 GO:0036211 GO:0042175 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

190

Amino Acids

21.88

Weight (kDa)

6.23

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	103 - 149	4.1e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	104 - 149	7.9e-12	Ring finger domain
zf-RING_11	PF17123	106 - 134	6e-09	RING-like zinc finger
zf-C3HC4_2	PF13923	106 - 148	1.7e-07	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	106 - 148	2.8e-07	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004548)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g32950 FvH4_7g32960
malus_domestica	MD01G1228600.v1.1 MD07G1299400.v1.1 MD07G1299500.v1.1 MD07G1299600.v1.1
prunus_persica	Prupe.2G319200_v2.0.a1 Prupe.2G319300_v2.0.a1 Prupe.2G319400_v2.0.a1
pyrus_communis	pycom07g27170
rosa_chinensis	RchiOBHm_Chr1g0382911 RchiOBHm_Chr1g0382921
rosa_laevigata	RLG00000026149
rosa_multiflora	Rmu_co8270753.1_g000001 Rmu_co8320179.1_g000001 Rmu_sc0001785.1_g000002 Rmu_sc0010366.1_g000003
rosa_roxburghii	Rroxscaffold_4G00277780
rosa_samantha	Rh1AG462300 Rh1AG462400 Rh1AG462500 Rh1AG462600 Rh1BG419300 Rh1BG419400 Rh1CG433000 Rh1CG433100 Rh1CG433200 Rh1CG433400 Rh1DG451400 Rh1DG451500
rosa_wichuraiana	Rw1G040940 Rw1G040950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AciI	CCGC	1 cut(s)	521
AclWI	GGATC	4 cut(s)	68, 441, 503, 516
AfaI	GTAC	2 cut(s)	430, 472
AflIII	ACRYGT	2 cut(s)	314, 379
AluBI	AGCT	5 cut(s)	121, 230, 250, 364, 559
AluI	AGCT	5 cut(s)	121, 230, 250, 364, 559
AlwI	GGATC	4 cut(s)	68, 441, 503, 516
AspLEI	GCGC	1 cut(s)	154
AsuC2I	CCSGG	2 cut(s)	126, 179
AsuHPI	GGTGA	1 cut(s)	367
AxyI	CCTNAGG	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	508
BanI	GGYRCC	1 cut(s)	205
BceAI	ACGGC	1 cut(s)	193
BclI	TGATCA	1 cut(s)	106
BcnI	CCSGG	2 cut(s)	126, 179
BfaI	CTAG	1 cut(s)	401
Bme1390I	CCNGG	2 cut(s)	126, 179
BmiI	GGNNCC	2 cut(s)	207, 510
BmrFI	CCNGG	2 cut(s)	126, 179
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	545
BpuMI	CCSGG	2 cut(s)	126, 179
BsaAI	YACGTR	2 cut(s)	101, 315
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	2 cut(s)	197, 512
Bse118I	RCCGGY	1 cut(s)	214
Bse21I	CCTNAGG	1 cut(s)	56
Bse8I	GATNNNNATC	1 cut(s)	111
BseDI	CCNNGG	2 cut(s)	197, 512
BseGI	GGATG	1 cut(s)	534
BseJI	GATNNNNATC	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	70
BseRI	GAGGAG	2 cut(s)	44, 285
BshNI	GGYRCC	1 cut(s)	205
BsiSI	CCGG	3 cut(s)	126, 179, 215
BslFI	GGGAC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	560
Bsp143I	GATC	6 cut(s)	60, 106, 142, 160, 446, 508
Bsp19I	CCATGG	1 cut(s)	512
BspACI	CCGC	1 cut(s)	521
BspCNI	CTCAG	1 cut(s)	69
BspHI	TCATGA	2 cut(s)	87, 493
BspLI	GGNNCC	2 cut(s)	207, 510
BspPI	GGATC	4 cut(s)	68, 441, 503, 516
BspT107I	GGYRCC	1 cut(s)	205
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	2 cut(s)	197, 512
BssMI	GATC	6 cut(s)	60, 106, 142, 160, 446, 508
BssT1I	CCWWGG	2 cut(s)	197, 512
Bst4CI	ACNGT	2 cut(s)	224, 259
BstBAI	YACGTR	2 cut(s)	101, 315
BstC8I	GCNNGC	1 cut(s)	302
BstDEI	CTNAG	1 cut(s)	56
BstDSI	CCRYGG	1 cut(s)	512
BstF5I	GGATG	1 cut(s)	534
BstHHI	GCGC	1 cut(s)	154
BstKTI	GATC	6 cut(s)	63, 109, 145, 163, 449, 511
BstMBI	GATC	6 cut(s)	60, 106, 142, 160, 446, 508
BstNSI	RCATGY	2 cut(s)	22, 383
BstSCI	CCNGG	2 cut(s)	124, 177
BstX2I	RGATCY	1 cut(s)	508
BstYI	RGATCY	1 cut(s)	508
Bsu36I	CCTNAGG	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	512
BtsCI	GGATG	1 cut(s)	534
BtsIMutI	CAGTG	2 cut(s)	220, 431
Cac8I	GCNNGC	1 cut(s)	302
CciI	TCATGA	2 cut(s)	87, 493
CfoI	GCGC	1 cut(s)	154
Cfr10I	RCCGGY	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	429, 471
CviAII	CATG	6 cut(s)	19, 88, 328, 380, 494, 513
CviJI	RGCY	6 cut(s)	121, 230, 250, 300, 364, 559
CviKI_1	RGCY	6 cut(s)	121, 230, 250, 300, 364, 559
CviQI	GTAC	2 cut(s)	429, 471
DdeI	CTNAG	1 cut(s)	56
DpnI	GATC	6 cut(s)	62, 108, 144, 162, 448, 510
DpnII	GATC	6 cut(s)	60, 106, 142, 160, 446, 508
EciI	GGCGGA	1 cut(s)	536
Eco130I	CCWWGG	2 cut(s)	197, 512
Eco81I	CCTNAGG	1 cut(s)	56
EcoT14I	CCWWGG	2 cut(s)	197, 512
ErhI	CCWWGG	2 cut(s)	197, 512
FaeI	CATG	6 cut(s)	22, 91, 331, 383, 497, 516
FaiI	YATR	8 cut(s)	20, 89, 227, 297, 329, 381, 495, 514
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	6 cut(s)	18, 87, 327, 379, 493, 512
FbaI	TGATCA	1 cut(s)	106
FokI	GGATG	1 cut(s)	541
FspBI	CTAG	1 cut(s)	401
GlaI	GCGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	462
HapII	CCGG	3 cut(s)	126, 179, 215
HhaI	GCGC	1 cut(s)	154
Hin1II	CATG	6 cut(s)	22, 91, 331, 383, 497, 516
Hin6I	GCGC	1 cut(s)	152
HinP1I	GCGC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	2 cut(s)	233, 287
HpaII	CCGG	3 cut(s)	126, 179, 215
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	3 cut(s)	220, 377, 429
Hpy188I	TCNGA	2 cut(s)	142, 292
Hpy188III	TCNNGA	8 cut(s)	12, 58, 67, 88, 253, 479, 494, 562
Hpy8I	GTNNAC	3 cut(s)	220, 377, 429
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	3 cut(s)	53, 201, 335
HpyCH4III	ACNGT	2 cut(s)	224, 259
HpyCH4IV	ACGT	2 cut(s)	100, 314
HpyCH4V	TGCA	2 cut(s)	262, 327
HpyF3I	CTNAG	1 cut(s)	56
HpySE526I	ACGT	2 cut(s)	100, 314
Hsp92II	CATG	6 cut(s)	22, 91, 331, 383, 497, 516
HspAI	GCGC	1 cut(s)	152
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	6 cut(s)	60, 106, 142, 160, 446, 508
LmnI	GCTCC	2 cut(s)	4, 255
LpnPI	CCDG	8 cut(s)	43, 139, 192, 228, 260, 269, 445, 492
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	401
MaeII	ACGT	2 cut(s)	100, 314
MaeIII	GTNAC	2 cut(s)	33, 184
MalI	GATC	6 cut(s)	62, 108, 144, 162, 448, 510
MboI	GATC	6 cut(s)	60, 106, 142, 160, 446, 508
MboII	GAAGA	1 cut(s)	253
MfeI	CAATTG	1 cut(s)	370
MflI	RGATCY	1 cut(s)	508
MluCI	AATT	3 cut(s)	169, 370, 466
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	9 cut(s)	65, 263, 266, 338, 412, 447, 510, 519, 558
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	3 cut(s)	126, 179, 215
MspR9I	CCNGG	2 cut(s)	126, 179
MunI	CAATTG	1 cut(s)	370
NciI	CCSGG	2 cut(s)	126, 179
NcoI	CCATGG	1 cut(s)	512
NdeII	GATC	6 cut(s)	60, 106, 142, 160, 446, 508
NlaIII	CATG	6 cut(s)	22, 91, 331, 383, 497, 516
NlaIV	GGNNCC	2 cut(s)	207, 510
NspI	RCATGY	2 cut(s)	22, 383
PagI	TCATGA	2 cut(s)	87, 493
PciI	ACATGT	1 cut(s)	379
PfeI	GAWTC	2 cut(s)	233, 287
PfoI	TCCNGGA	2 cut(s)	124, 177
Ppu21I	YACGTR	2 cut(s)	101, 315
PscI	ACATGT	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	207, 510
PsuI	RGATCY	1 cut(s)	508
RsaI	GTAC	2 cut(s)	430, 472
RsaNI	GTAC	2 cut(s)	429, 471
RseI	CAYNNNNRTG	1 cut(s)	29
Sau3AI	GATC	6 cut(s)	60, 106, 142, 160, 446, 508
ScrFI	CCNGG	2 cut(s)	126, 179
SfaNI	GCATC	1 cut(s)	394
SmiMI	CAYNNNNRTG	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	3 cut(s)	169, 370, 466
SsiI	CCGC	1 cut(s)	521
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	2 cut(s)	124, 177
StyI	CCWWGG	2 cut(s)	197, 512
TaaI	ACNGT	2 cut(s)	224, 259
TaiI	ACGT	2 cut(s)	103, 317
TaqI	TCGA	1 cut(s)	445
TasI	AATT	3 cut(s)	169, 370, 466
TatI	WGTACW	1 cut(s)	470
TfiI	GAWTC	2 cut(s)	233, 287
TscAI	CASTG	2 cut(s)	227, 431
TspDTI	ATGAA	2 cut(s)	76, 510
TspGWI	ACGGA	1 cut(s)	226
TspRI	CASTG	2 cut(s)	227, 431
XceI	RCATGY	2 cut(s)	22, 383
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.